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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
NMRAL1 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
32.4
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
182.8
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
164.1
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
128.9
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
122.0
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
119.7
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
110.4
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
103.9
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
90.2
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
86.0
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
84.2
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
82.0
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
81.3
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
80.5
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
78.2
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
73.4
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
72.0
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
71.4
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
71.4
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
70.9
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
70.0
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
68.6
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
68.5
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
67.8
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
67.8
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
66.8
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
64.4
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
64.4
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
63.4
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
62.9
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
62.2
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
61.0
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
60.5
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
60.2
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
60.0
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
59.0
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
58.8
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
58.1
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
57.9
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
57.8
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
57.6
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
57.5
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
57.4
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
57.3
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
56.6
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
56.4
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
56.2
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
55.5
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
54.0
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
53.5
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
53.0
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
53.0
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
52.2
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
52.1
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
52.1
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
51.8
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
51.1
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
50.9
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
50.6
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
50.5
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
50.2
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
50.2
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
49.5
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
49.3
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
49.3
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
49.3
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
49.3
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
48.9
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
48.8
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
48.2
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
47.8
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
47.6
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
47.6
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
46.5
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
45.7
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
45.4
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
45.2
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
45.1
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
45.0
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
44.6
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
44.5
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
44.1
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
44.1
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
43.5
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
43.3
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
43.2
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
42.7
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
42.7
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
42.3
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
42.2
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
41.8
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
41.8
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
41.7
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
41.7
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
41.6
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
41.3
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
41.2
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
40.9
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
40.8
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
40.8
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
40.7
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
40.5
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
40.4
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
40.2
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
40.2
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
40.2
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
39.9
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
39.8
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
39.5
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
39.3
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
39.3
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
39.2
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
38.6
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
38.6
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
38.6
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
38.4
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
38.0
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
37.5
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
37.5
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
37.2
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
37.2
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
37.1
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
37.1
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
36.9
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
36.6
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
36.1
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
35.5
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
35.3
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
35.2
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
35.0
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
34.9
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
34.9
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
34.5
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
33.9
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
33.8
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
33.7
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
33.6
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
33.5
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
33.4
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
33.2
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
33.0
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
32.8
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
32.6
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
32.5
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
32.5
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
32.4
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
31.9
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
31.9
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
31.8
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
31.8
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
31.7
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
31.7
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
31.5
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
31.4
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
31.2
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
31.1
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
31.0
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
30.6
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
30.6
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
30.4
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
30.4
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
30.3
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
30.2
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
30.2
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
30.2
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
30.0
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
29.9
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
29.8
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
29.8
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
29.8
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
29.7
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
29.7
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
29.7
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
29.4
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
29.3
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
29.0
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
29.0
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
28.9
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
28.8
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
28.8
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
28.7
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
28.6
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
28.4
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
28.1
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
27.5
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
27.5
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
27.4
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
27.3
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
26.8
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
26.7
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
26.4
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
26.3
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
25.9
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
25.9
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
25.8
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
25.7
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
25.6
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
25.6
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
25.5
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
25.4
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
25.2
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
25.1
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
25.1
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
25.1
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
25.0
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
25.0
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
24.8
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
24.6
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
24.5
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
24.4
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
24.4
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
24.3
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
24.1
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
23.8
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
23.7
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
23.5
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
23.5
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
23.3
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
23.3
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
23.1
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
22.9
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
22.9
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
22.9
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
22.9
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
22.7
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
22.5
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
22.3
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
22.3
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
22.3
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
22.1
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
22.1
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
22.0
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
22.0
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
22.0
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
21.8
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
21.8
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
21.8
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
21.5
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
21.2
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
21.1
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
21.0
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
21.0
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
20.9
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
20.8
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
20.6
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
20.6
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
20.5
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
20.5
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
20.5
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
20.4
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
20.4
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
20.4
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
20.4
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
20.3
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
20.3
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
20.0
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
19.9
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
19.9
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
19.8
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
19.8
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
18.9
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
18.9
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
18.8
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
18.7
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
18.6
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
18.5
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
18.3
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
18.3
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
18.2
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
18.1
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
18.0
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
18.0
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
17.5
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
17.4
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
17.4
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
16.8
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
16.6
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
16.5
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
16.4
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
16.4
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
16.3
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
16.2
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
16.2
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
16.2
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
16.1
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
16.0
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
15.8
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
15.6
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
15.4
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
15.4
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
15.4
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
15.1
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
15.1
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
15.0
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
14.9
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
14.9
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
14.9
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
14.6
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
14.6
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
14.1
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
14.0
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
13.9
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
13.7
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
13.7
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
13.6
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
13.6
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
13.5
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
13.4
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
13.4
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
13.3
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
12.9
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
12.5
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
12.4
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
12.3
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
11.9
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
11.9
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
11.9
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
11.7
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
11.7
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
11.7
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
11.3
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
11.3
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
11.0
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
10.9
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
10.8
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
10.8
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
10.1
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
10.0
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
9.5
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
9.2
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
9.1
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
8.8
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
8.4
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
7.1
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
6.3
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
6.1
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
5.6
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
4.9
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
4.3
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
4.2
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
4.2
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
3.5
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
3.4
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
3.4
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
3.3
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
2.7
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
2.4
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
2.4
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
2.3
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
2.2
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
2.2
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
1.9
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
1.8
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
1.7
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
1.6
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
1.4
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
1.4
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
1.3
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
1.1
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
1.0
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
0.8
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
0.7
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
NMRAL1 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
26.4
Number of samples
231
Samples
Sample
Description
TPM
DO23526
0 years, male, NA, stage:3, alive, 1050 days
102.5
DO45241
0 years, male, NA, stage:1, alive, 1080 days
102.1
DO45149
0 years, female, NA, stage:2, alive, 1260 days
88.0
DO50816
0 years, male, NA, stage:2, alive, 390 days
87.7
DO48701
0 years, male, NA, stage:2, alive, 780 days
85.3
DO23511
0 years, female, NA, stage:3, dead, 180 days
83.8
DO45095
0 years, male, NA, stage:2, alive, 1620 days
79.0
DO50811
0 years, male, NA, stage:1, alive, 450 days
78.1
DO45209
0 years, male, NA, stage:4, alive, 1350 days
75.3
DO23513
0 years, male, NA, stage:3, alive, 1200 days
67.6
DO45185
0 years, male, NA, stage:2, alive, 600 days
67.4
DO23532
0 years, female, NA, stage:1, alive, 960 days
64.4
DO23533
0 years, male, NA, stage:2, alive, 900 days
64.0
DO23516
0 years, male, NA, stage:3, dead, 20 days
63.6
DO23540
0 years, male, NA, stage:1, alive, 750 days
60.1
DO45125
0 years, male, NA, stage:3, alive, 1680 days
58.2
DO50799
0 years, female, NA, stage:2, alive, 540 days
57.3
DO48716
0 years, male, NA, stage:2, alive, 720 days
55.4
DO50839
0 years, female, NA, stage:3, alive, 330 days
52.3
DO45285
0 years, male, NA, stage:3, alive, 480 days
51.1
DO50817
0 years, male, NA, stage:2, alive, 390 days
50.6
DO45299
0 years, female, NA, stage:1, alive, 1440 days
49.6
DO50814
0 years, male, NA, stage:3, alive, 420 days
49.4
DO45167
0 years, male, NA, stage:2, dead, 1440 days
47.7
DO45281
0 years, male, NA, stage:4, alive, 750 days
47.6
DO50798
0 years, male, NA, stage:3, dead, 30 days
46.6
DO23539
0 years, male, NA, stage:1, alive, 1110 days
45.7
DO48747
0 years, male, NA, stage:3, alive, 540 days
44.9
DO45171
0 years, male, NA, stage:3, alive, 600 days
44.7
DO45103
0 years, male, NA, stage:3, alive, 450 days
44.1
DO50783
0 years, male, NA, stage:3, alive, 480 days
43.5
DO45253
0 years, male, NA, stage:2, alive, 870 days
42.3
DO45205
0 years, female, NA, stage:2, dead, 90 days
42.3
DO23547
0 years, male, NA, stage:1, alive, 1020 days
42.2
DO45259
0 years, male, NA, stage:3, alive, 330 days
42.0
DO45229
0 years, male, NA, stage:1, alive, 990 days
41.6
DO45109
0 years, male, NA, stage:2, alive, 1590 days
41.5
DO45297
0 years, female, NA, stage:4, dead, 1260 days
41.5
DO45169
0 years, male, NA, stage:3, alive, 1350 days
41.4
DO23549
0 years, male, NA, stage:3, alive, 990 days
40.5
DO45145
0 years, male, NA, stage:3, dead, 60 days
40.5
DO23541
0 years, male, NA, stage:2, alive, 930 days
40.3
DO45301
0 years, male, NA, stage:2, dead, 1440 days
40.0
DO23527
0 years, male, NA, stage:1, alive, 1050 days
39.9
DO45105
0 years, male, NA, stage:1, alive, 1680 days
39.8
DO23519
0 years, male, NA, stage:3, alive, 630 days
39.7
DO45235
0 years, female, NA, stage:1, alive, 900 days
39.6
DO50829
0 years, male, NA, stage:3, alive, 570 days
39.6
DO48679
0 years, male, NA, stage:2, alive, 1200 days
38.8
DO48712
0 years, male, NA, stage:2, alive, 810 days
38.7
DO45283
0 years, male, NA, stage:3, alive, 510 days
38.7
DO48717
0 years, male, NA, stage:4, dead, 180 days
38.6
DO45211
0 years, male, NA, stage:3, alive, 240 days
38.3
DO45141
0 years, male, NA, stage:2, alive, 1320 days
36.2
DO48733
0 years, male, NA, stage:2, alive, 600 days
36.0
DO45303
0 years, female, NA, stage:3, alive, 990 days
35.2
DO50845
0 years, male, NA, stage:3, alive, 210 days
35.0
DO50832
0 years, male, NA, stage:3, alive, 90 days
35.0
DO48757
0 years, female, NA, stage:3, alive, 480 days
34.1
DO45255
0 years, male, NA, stage:3, alive, 720 days
34.1
DO48721
0 years, female, NA, stage:1, alive, 900 days
33.7
DO45199
0 years, female, NA, stage:2, alive, 1350 days
33.5
DO50791
0 years, female, NA, stage:1, dead, 480 days
33.5
DO45094
0 years, male, NA, stage:3, alive, 1650 days
33.3
DO45153
0 years, female, NA, stage:2, alive, 1380 days
33.2
DO45197
0 years, male, NA, stage:2, alive, 1170 days
33.1
DO45273
0 years, male, NA, stage:2, alive, 480 days
32.6
DO48751
0 years, male, NA, stage:2, dead, 480 days
32.6
DO45277
0 years, male, NA, stage:3, alive, 600 days
32.3
DO50840
0 years, male, NA, stage:2, alive, 330 days
32.2
DO227643
0 years, male, NA, stage:2, alive, 1260 days
32.0
DO23518
0 years, male, NA, stage:2, alive, 1320 days
31.5
DO50822
0 years, male, NA, stage:2, alive, 510 days
31.2
DO45193
0 years, female, NA, stage:4, dead, 120 days
31.1
DO45155
0 years, male, NA, stage:2, alive, 2160 days
31.0
DO45097
0 years, male, NA, stage:3, alive, 1620 days
30.5
DO48741
0 years, male, NA, stage:3, alive, 240 days
30.1
DO48723
0 years, male, NA, stage:1, alive, 600 days
30.1
DO45175
0 years, male, NA, stage:2, alive, 1140 days
29.5
DO50776
0 years, male, NA, stage:1, alive, 690 days
29.3
DO45307
0 years, female, NA, stage:4, dead, 240 days
29.3
DO23508
0 years, female, NA, stage:2, alive, 390 days
29.3
DO45267
0 years, male, NA, stage:3, dead, 570 days
29.0
DO45215
0 years, male, NA, stage:2, alive, 1170 days
28.9
DO45305
0 years, male, NA, stage:4, alive, 300 days
28.6
DO50785
0 years, male, NA, stage:4, dead, 90 days
28.5
DO50818
0 years, male, NA, stage:2, alive, 510 days
28.1
DO50844
0 years, male, NA, stage:4, alive, 300 days
27.9
DO50802
0 years, male, NA, stage:2, alive, 930 days
27.9
DO23548
0 years, female, NA, stage:1, alive, 840 days
27.7
DO23535
0 years, male, NA, stage:1, alive, 960 days
27.6
DO50793
0 years, male, NA, stage:4, alive, 540 days
27.4
DO45099
0 years, male, NA, stage:3, alive, 1590 days
27.3
DO45287
0 years, male, NA, stage:1, alive, 390 days
27.2
DO45289
0 years, female, NA, stage:3, alive, 360 days
27.1
DO50850
0 years, male, NA, stage:3, alive, 720 days
27.0
DO45129
0 years, male, NA, stage:3, alive, 1470 days
27.0
DO45159
0 years, male, NA, stage:3, alive, 1470 days
26.8
DO50808
0 years, male, NA, stage:2, alive, 570 days
26.2
DO48695
0 years, male, NA, stage:2, alive, 720 days
26.0
DO48677
0 years, male, NA, stage:3, alive, 1140 days
25.9
DO48697
0 years, female, NA, stage:2, dead, 810 days
25.8
DO50800
0 years, male, NA, stage:2, alive, 510 days
25.5
DO48672
0 years, male, NA, stage:2, alive, 450 days
25.5
DO50859
0 years, male, NA, stage:2, alive, 180 days
25.4
DO45221
0 years, female, NA, stage:4, dead, 390 days
25.1
DO48719
0 years, male, NA, stage:2, alive, 690 days
25.0
DO45243
0 years, female, NA, stage:3, alive, 930 days
24.9
DO227801
0 years, female, NA, stage:1, alive, 660 days
24.9
DO45275
0 years, male, NA, stage:3, dead, 10 days
24.7
DO50803
0 years, female, NA, stage:1, alive, 540 days
24.6
DO45251
0 years, female, NA, stage:2, alive, 900 days
24.1
DO50855
0 years, male, NA, stage:2, alive, 570 days
24.0
DO45189
0 years, female, NA, stage:2, alive, 1200 days
23.5
DO23510
0 years, female, NA, stage:2, alive, 870 days
23.5
DO45107
0 years, female, NA, stage:2, alive, 1710 days
23.4
DO45165
0 years, male, NA, stage:2, alive, 690 days
23.3
DO48674
0 years, male, NA, stage:2, alive, 1260 days
22.9
DO48682
0 years, female, NA, stage:3, dead, 120 days
22.7
DO48725
0 years, male, NA, stage:1, alive, 780 days
22.7
DO23509
0 years, male, NA, stage:3, dead, 780 days
22.7
DO45201
0 years, male, NA, stage:1, alive, 900 days
22.6
DO23521
0 years, male, NA, stage:3, alive, 1110 days
22.3
DO23534
0 years, male, NA, stage:2, alive, 840 days
22.2
DO45131
0 years, male, NA, stage:4, dead, 360 days
21.5
DO23515
0 years, male, NA, stage:2, alive, 1230 days
21.2
DO48760
0 years, female, NA, stage:2, alive, 690 days
21.1
DO23537
0 years, male, NA, stage:2, dead, 900 days
20.9
DO45231
0 years, male, NA, stage:2, alive, 930 days
20.8
DO45177
0 years, female, NA, stage:3, alive, 1260 days
20.5
DO50857
0 years, male, NA, stage:2, alive, 210 days
20.5
DO45173
0 years, male, NA, stage:3, alive, 1170 days
20.4
DO50787
0 years, male, NA, stage:3, alive, 480 days
20.3
DO45237
0 years, male, NA, stage:2, alive, 900 days
20.2
DO45249
0 years, male, NA, stage:1, alive, 630 days
20.2
DO45101
0 years, male, NA, stage:2, alive, 1680 days
20.2
DO45279
0 years, male, NA, stage:3, alive, 1290 days
19.7
DO23523
0 years, male, NA, stage:3, alive, 1080 days
19.1
DO23512
0 years, male, NA, stage:1, alive, 1260 days
18.6
DO50804
0 years, male, NA, stage:2, alive, 720 days
18.6
DO23530
0 years, male, NA, stage:4, dead, 180 days
18.6
DO45092
0 years, male, NA, stage:4, dead, 1200 days
18.5
DO48704
0 years, female, NA, stage:3, alive, 750 days
18.5
DO45139
0 years, male, NA, stage:3, alive, 1320 days
18.5
DO45135
0 years, male, NA, stage:1, alive, 1410 days
18.2
DO48728
0 years, female, NA, stage:2, alive, 150 days
18.0
DO50825
0 years, male, NA, stage:2, alive, 390 days
17.9
DO45096
0 years, male, NA, stage:2, dead, 1290 days
17.7
DO50815
0 years, male, NA, stage:3, alive, 150 days
17.7
DO45181
0 years, female, NA, stage:2, alive, 1200 days
17.6
DO23542
0 years, male, NA, stage:3, alive, 960 days
17.5
DO45219
0 years, male, NA, stage:2, alive, 1080 days
17.1
DO45143
0 years, male, NA, stage:3, alive, 1290 days
16.8
DO45179
0 years, female, NA, stage:2, alive, 600 days
16.7
DO45123
0 years, female, NA, stage:2, dead, 570 days
16.6
DO23550
0 years, male, NA, stage:1, alive, 990 days
16.3
DO45117
0 years, female, NA, stage:2, dead, 1110 days
16.2
DO45157
0 years, male, NA, stage:2, alive, 1980 days
15.9
DO23543
0 years, male, NA, stage:2, alive, 1020 days
15.9
DO45195
0 years, male, NA, stage:1, alive, 390 days
15.8
DO23531
0 years, female, NA, stage:3, alive, 900 days
15.6
DO23544
0 years, male, NA, stage:2, alive, 960 days
15.6
DO48727
0 years, female, NA, stage:2, dead, 390 days
15.5
DO23551
0 years, male, NA, stage:3, dead, 150 days
15.4
DO23529
0 years, male, NA, stage:4, alive, 930 days
15.2
DO23545
0 years, male, NA, stage:2, dead, 570 days
15.1
DO45137
0 years, male, NA, stage:1, alive, 1320 days
14.9
DO23514
0 years, male, NA, stage:2, alive, 1290 days
14.8
DO45213
0 years, male, NA, stage:1, alive, 1200 days
14.4
DO48761
0 years, male, NA, stage:2, alive, 870 days
14.3
DO50820
0 years, female, NA, stage:3, alive, 510 days
14.0
DO48720
0 years, female, NA, stage:2, alive, 570 days
14.0
DO48732
0 years, male, NA, stage:3, alive, 630 days
13.8
DO48742
0 years, male, NA, stage:2, alive, 600 days
13.5
DO23517
0 years, male, NA, stage:2, alive, 1200 days
13.3
DO45119
0 years, male, NA, stage:3, dead, 510 days
13.0
DO45203
0 years, female, NA, stage:2, alive, 1170 days
12.9
DO45093
0 years, male, NA, stage:2, dead, 720 days
12.6
DO23552
0 years, female, NA, stage:1, alive, 810 days
12.2
DO48743
0 years, female, NA, stage:2, alive, 570 days
11.5
DO45183
0 years, female, NA, stage:2, dead, 570 days
11.3
DO45247
0 years, female, NA, stage:2, alive, 210 days
10.8
DO23538
0 years, male, NA, stage:2, alive, 450 days
10.7
DO45115
0 years, male, NA, stage:2, alive, 840 days
10.6
DO45245
0 years, female, NA, stage:2, dead, 240 days
10.3
DO45163
0 years, male, NA, stage:2, alive, 960 days
10.2
DO48700
0 years, female, NA, stage:2, alive, 810 days
10.0
DO50807
0 years, male, NA, stage:1, alive, 540 days
9.9
DO45239
0 years, male, NA, stage:2, alive, 870 days
9.8
DO45113
0 years, male, NA, stage:3, alive, 1560 days
9.7
DO50774
0 years, female, NA, stage:2, alive, 720 days
9.6
DO45233
0 years, male, NA, stage:3, alive, 900 days
9.6
DO48746
0 years, male, NA, stage:3, alive, 570 days
9.5
DO50805
0 years, male, NA, stage:2, alive, 690 days
9.4
DO50819
0 years, female, NA, stage:2, alive, 510 days
9.1
DO45261
0 years, male, NA, stage:3, alive, 990 days
9.0
DO45191
0 years, female, NA, stage:2, alive, 1200 days
8.9
DO45265
0 years, male, NA, stage:3, alive, 1020 days
8.9
DO23546
0 years, male, NA, stage:2, alive, 1050 days
8.7
DO45091
0 years, male, NA, stage:2, dead, 1320 days
8.6
DO48759
0 years, male, NA, stage:3, alive, 720 days
8.3
DO23536
0 years, male, NA, stage:2, alive, 930 days
8.2
DO45121
0 years, male, NA, stage:3, alive, 1530 days
7.0
DO50778
0 years, male, NA, stage:4, alive, 630 days
6.6
DO48730
0 years, female, NA, stage:2, alive, 630 days
6.6
DO45111
0 years, male, NA, stage:2, alive, 1590 days
5.6
DO48693
0 years, male, NA, stage:2, alive, 900 days
5.4
DO50809
0 years, male, NA, stage:3, dead, 720 days
4.7
DO45225
0 years, male, NA, stage:1, alive, 1050 days
4.1
DO48736
0 years, female, NA, stage:1, alive, 600 days
3.8
DO23525
0 years, male, NA, stage:4, alive, 1050 days
3.6
DO48706
0 years, male, NA, stage:2, alive, 870 days
3.5
DO50806
0 years, male, NA, stage:4, alive, 540 days
3.1
DO45223
0 years, male, NA, stage:4, alive, 1020 days
3.0
DO48737
0 years, male, NA, stage:1, alive, 720 days
2.7
DO45263
0 years, male, NA, stage:3, dead, 270 days
2.6
DO45227
0 years, female, NA, stage:2, alive, 1020 days
2.6
DO45217
0 years, female, NA, stage:3, dead, 270 days
2.4
DO48715
0 years, female, NA, stage:2, dead, 690 days
2.0
DO45207
0 years, male, NA, stage:1, alive, 1050 days
2.0
DO23524
0 years, female, NA, stage:2, alive, 1050 days
2.0
DO50813
0 years, male, NA, stage:2, alive, 420 days
2.0
DO45161
0 years, male, NA, stage:2, dead, 540 days
1.9
DO45257
0 years, male, NA, stage:3, alive, 810 days
1.8
DO45127
0 years, male, NA, stage:3, dead, 420 days
1.7
DO48681
0 years, male, NA, stage:2, alive, 900 days
1.6
DO45187
0 years, female, NA, stage:1, alive, 1260 days
1.3
DO45269
0 years, male, NA, stage:3, alive, 750 days
1.0
DO23528
0 years, female, NA, stage:2, alive, 1020 days
0.9
DO45133
0 years, male, NA, stage:3, dead, 660 days
0.8
DO50789
0 years, female, NA, stage:2, alive, 570 days
0.8
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
327
Tumor
1.7
755
Tumor
1.6
465
Tumor
1.5
937
Tumor
1.4
533
Tumor
1.3
451
Tumor
1.3
663
Tumor
1.2
195
Tumor
1.1
221
Tumor
1.0
857
Tumor
1.0
913
Tumor
0.9
955
Tumor
0.9
171
Tumor
0.9
392
Normal
0.9
462
Normal
0.8
915
Tumor
0.8
468
Normal
0.8
957
Tumor
0.8
861
Tumor
0.8
187
Tumor
0.8
618
Normal
0.7
414
Normal
0.7
196
Normal
0.7
466
Normal
0.7
172
Normal
0.7
484
Normal
0.7
664
Normal
0.7
222
Normal
0.7
723
Tumor
0.7
864
Normal
0.7
642
Normal
0.7
568
Normal
0.7
1046
Normal
0.7
356
Normal
0.7
452
Normal
0.6
412
Normal
0.6
473
Tumor
0.6
777
Tumor
0.6
925
Tumor
0.6
357
Tumor
0.6
286
Normal
0.6
278
Normal
0.6
564
Normal
0.6
422
Normal
0.6
878
Normal
0.6
958
Normal
0.6
756
Normal
0.6
396
Normal
0.6
362
Normal
0.6
868
Normal
0.6
272
Normal
0.6
366
Normal
0.6
448
Normal
0.6
426
Normal
0.6
862
Normal
0.6
918
Normal
0.6
514
Normal
0.6
123
Tumor
0.6
494
Normal
0.5
938
Normal
0.5
141
Tumor
0.5
716
Normal
0.5
376
Normal
0.5
394
Normal
0.5
977
Tumor
0.5
741
Tumor
0.5
966
Normal
0.5
527
Tumor
0.5
824
Normal
0.5
423
Tumor
0.5
464
Normal
0.5
574
Normal
0.5
526
Normal
0.5
314
Normal
0.5
978
Normal
0.5
136
Normal
0.5
428
Normal
0.5
186
Normal
0.5
212
Normal
0.5
714
Normal
0.5
922
Normal
0.5
358
Normal
0.5
572
Normal
0.5
147
Tumor
0.5
142
Normal
0.5
262
Normal
0.5
328
Normal
0.5
1021
Tumor
0.5
298
Normal
0.5
786
Normal
0.5
354
Normal
0.5
1016
Normal
0.5
415
Tumor
0.5
1026
Normal
0.5
191
Tumor
0.5
557
Tumor
0.5
954
Normal
0.4
128
Normal
0.4
1022
Normal
0.4
818
Normal
0.4
497
Tumor
0.4
924
Normal
0.4
461
Tumor
0.4
573
Tumor
0.4
284
Normal
0.4
364
Normal
0.4
474
Normal
0.4
1042
Normal
0.4
516
Normal
0.4
162
Normal
0.4
224
Normal
0.4
923
Tumor
0.4
432
Normal
0.4
852
Normal
0.4
425
Tumor
0.4
528
Normal
0.4
386
Normal
0.4
481
Tumor
0.4
258
Normal
0.4
411
Tumor
0.4
456
Normal
0.4
355
Tumor
0.4
435
Tumor
0.4
921
Tumor
0.4
546
Normal
0.4
483
Tumor
0.4
912
Normal
0.4
472
Normal
0.4
926
Normal
0.4
956
Normal
0.3
525
Tumor
0.3
858
Normal
0.3
214
Normal
0.3
482
Normal
0.3
778
Normal
0.3
388
Normal
0.3
558
Normal
0.3
648
Normal
0.3
953
Tumor
0.3
188
Normal
0.3
722
Normal
0.3
865
Tumor
0.3
416
Normal
0.3
982
Normal
0.3
616
Normal
0.3
148
Normal
0.3
636
Normal
0.3
1044
Normal
0.3
738
Normal
0.3
393
Tumor
0.3
218
Normal
0.3
662
Normal
0.3
666
Normal
0.3
715
Tumor
0.3
882
Normal
0.3
914
Normal
0.3
267
Tumor
0.3
518
Normal
0.3
436
Normal
0.3
341
Tumor
0.3
976
Normal
0.2
742
Normal
0.2
981
Tumor
0.2
232
Normal
0.2
1014
Normal
0.2
132
Normal
0.2
975
Tumor
0.2
434
Normal
0.2
866
Normal
0.2
867
Tumor
0.2
696
Normal
0.2
746
Normal
0.2
424
Normal
0.2
488
Normal
0.2
1028
Normal
0.2
724
Normal
0.2
446
Normal
0.2
553
Tumor
0.2
447
Tumor
0.2
647
Tumor
0.1
813
Tumor
0.1
563
Tumor
0.1
312
Normal
0.1
271
Tumor
0.1
534
Normal
0.1
161
Tumor
0.1
538
Normal
0.1
884
Normal
0.1
433
Tumor
0.1
744
Normal
0.1
395
Tumor
0.1
332
Normal
0.1
444
Normal
0.1
823
Tumor
0.1
916
Normal
0.1
487
Tumor
0.1
112
Tumor
0.1
964
Normal
0.1
111
Normal
0.1
192
Normal
0.1
686
Normal
0.1
431
Tumor
0.1
137
Tumor
0.1
1027
Tumor
0.1
365
Tumor
0.1
628
Normal
0.1
138
Normal
0.1
968
Normal
0.1
467
Tumor
0.1
413
Tumor
0.0
124
Normal
0.0
126
Normal
0.0
814
Normal
0.0
492
Normal
0.0
863
Tumor
0.0
384
Normal
0.0
745
Tumor
0.0
984
Normal
0.0
1032
Normal
0.0
342
Normal
0.0
277
Tumor
0.0
268
Normal
0.0
524
Normal
0.0
344
Normal
0.0
352
Normal
0.0
641
Tumor
-0.1
672
Normal
-0.1
498
Normal
-0.1
695
Tumor
-0.1
952
Normal
-0.1
135
Tumor
-0.1
1015
Tumor
-0.1
1041
Tumor
-0.1
383
Tumor
-0.1
785
Tumor
-0.1
515
Tumor
-0.1
217
Tumor
-0.1
313
Tumor
-0.1
881
Tumor
-0.2
545
Tumor
-0.2
536
Normal
-0.2
113
Tumor
-0.2
874
Normal
-0.2
737
Tumor
-0.2
228
Normal
-0.2
213
Tumor
-0.2
1031
Tumor
-0.2
343
Tumor
-0.2
1043
Tumor
-0.2
917
Tumor
-0.2
571
Tumor
-0.2
817
Tumor
-0.2
963
Tumor
-0.2
911
Tumor
-0.2
728
Normal
-0.2
698
Normal
-0.3
145
Tumor
-0.3
721
Tumor
-0.3
114
Normal
-0.3
146
Normal
-0.3
944
Normal
-0.3
523
Tumor
-0.3
1013
Tumor
-0.3
421
Tumor
-0.4
463
Tumor
-0.4
455
Tumor
-0.4
873
Tumor
-0.4
513
Tumor
-0.4
493
Tumor
-0.4
1025
Tumor
-0.4
627
Tumor
-0.4
211
Tumor
-0.4
554
Normal
-0.4
261
Tumor
-0.4
311
Tumor
-0.5
297
Tumor
-0.5
816
Normal
-0.5
478
Normal
-0.5
665
Tumor
-0.5
883
Tumor
-0.5
617
Tumor
-0.6
851
Tumor
-0.6
385
Tumor
-0.6
713
Tumor
-0.6
283
Tumor
-0.6
535
Tumor
-0.6
943
Tumor
-0.6
477
Tumor
-0.7
697
Tumor
-0.7
635
Tumor
-0.7
125
Tumor
-0.7
491
Tumor
-0.7
445
Tumor
-0.7
1045
Tumor
-0.7
615
Tumor
-0.7
877
Tumor
-0.8
951
Tumor
-0.8
567
Tumor
-0.9
185
Tumor
-0.9
727
Tumor
-1.0
661
Tumor
-1.0
815
Tumor
-1.0
375
Tumor
-1.1
983
Tumor
-1.1
391
Tumor
-1.1
363
Tumor
-1.2
227
Tumor
-1.3
368
Normal
-1.3
351
Tumor
-1.4
427
Tumor
-1.4
387
Tumor
-1.4
127
Tumor
-1.5
231
Tumor
-1.5
443
Tumor
-1.5
257
Tumor
-1.6
361
Tumor
-1.6
353
Tumor
-1.6
471
Tumor
-1.7
223
Tumor
-1.8
331
Tumor
-1.8
131
Tumor
-1.8
517
Tumor
-1.8
685
Tumor
-1.9
671
Tumor
-1.9
967
Tumor
-2.0
285
Tumor
-2.0
965
Tumor
-2.2
537
Tumor
-2.3
367
Tumor
-2.4
743
Tumor
-2.4
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
