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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
HNRNPU is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
86.9
Number of samples
362
Samples
Sample
Description
TPM
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
247.3
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
242.3
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
234.9
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
207.7
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
199.0
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
191.0
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
190.6
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
180.8
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
177.8
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
172.4
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
172.3
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
169.7
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
169.6
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
167.5
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
167.0
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
162.7
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
162.4
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
159.9
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
158.2
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
156.4
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
153.9
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
152.9
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
152.1
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
151.0
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
149.7
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
149.3
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
148.4
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
146.0
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
145.3
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
140.6
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
140.0
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
139.4
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
139.2
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
138.7
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
137.0
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
136.5
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
136.1
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
136.1
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
136.0
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
135.7
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
135.0
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
133.1
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
132.8
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
132.7
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
132.5
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
132.2
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
131.8
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
131.0
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
130.5
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
127.4
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
126.3
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
125.3
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
125.3
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
124.7
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
122.9
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
122.7
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
121.0
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
120.7
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
119.8
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
119.0
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
118.6
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
118.4
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
117.7
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
117.1
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
116.2
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
115.5
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
114.9
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
114.2
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
113.7
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
112.9
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
112.4
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
112.0
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
111.5
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
111.3
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
111.0
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
111.0
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
110.9
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
110.2
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
109.2
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
107.9
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
107.5
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
106.6
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
106.0
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
105.7
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
105.6
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
104.4
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
104.2
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
104.0
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
103.6
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
102.7
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
102.5
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
102.3
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
102.3
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
102.2
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
102.1
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
102.1
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
101.3
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
101.2
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
100.6
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
100.0
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
99.9
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
99.4
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
99.4
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
99.3
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
98.9
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
98.8
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
98.7
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
97.7
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
97.4
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
96.8
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
96.6
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
96.0
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
95.9
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
95.0
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
94.9
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
94.8
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
94.6
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
93.4
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
93.4
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
93.3
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
93.2
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
93.1
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
93.0
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
93.0
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
92.6
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
92.0
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
92.0
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
91.7
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
91.2
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
91.2
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
91.1
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
90.7
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
90.6
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
90.3
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
89.9
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
89.8
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
89.8
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
89.4
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
89.3
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
89.1
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
89.0
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
88.8
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
88.8
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
88.7
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
88.4
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
88.2
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
87.9
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
87.7
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
87.6
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
87.6
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
87.3
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
87.2
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
87.2
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
86.9
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
86.6
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
86.1
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
85.9
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
85.9
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
85.4
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
84.9
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
84.8
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
84.7
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
84.6
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
84.6
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
84.5
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
84.1
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
83.9
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
82.7
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
82.4
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
82.2
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
82.1
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
81.1
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
81.1
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
80.9
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
80.8
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
80.8
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
80.5
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
80.1
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
80.0
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
80.0
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
79.7
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
79.3
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
79.3
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
79.1
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
79.0
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
79.0
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
79.0
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
78.6
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
78.6
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
78.6
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
78.5
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
78.5
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
78.1
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
77.9
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
77.8
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
77.6
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
77.5
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
77.5
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
77.4
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
77.3
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
77.1
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
76.5
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
76.4
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
76.3
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
76.0
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
75.9
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
75.8
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
75.4
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
75.0
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
74.8
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
74.6
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
74.5
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
74.4
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
73.7
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
73.4
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
72.8
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
72.5
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
72.5
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
72.2
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
72.0
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
71.5
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
71.4
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
71.4
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
70.6
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
70.5
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
70.2
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
69.8
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
69.7
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
69.6
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
69.0
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
68.8
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
68.7
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
68.6
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
68.5
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
68.4
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
67.3
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
67.1
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
66.4
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
66.0
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
66.0
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
65.9
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
65.9
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
65.7
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
65.7
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
65.4
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
65.4
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
65.3
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
64.7
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
64.7
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
64.6
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
64.6
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
64.3
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
64.2
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
63.9
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
63.8
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
63.8
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
63.7
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
63.7
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
63.6
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
63.4
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
63.0
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
63.0
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
63.0
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
62.7
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
62.6
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
62.6
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
62.3
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
62.0
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
61.8
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
61.5
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
61.3
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
61.1
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
60.9
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
60.3
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
60.1
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
60.1
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
59.8
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
59.7
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
59.3
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
59.3
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
59.1
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
58.8
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
58.2
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
57.8
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
57.7
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
57.2
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
57.2
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
57.0
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
57.0
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
56.7
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
56.7
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
56.2
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
56.0
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
55.8
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
55.8
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
55.8
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
55.5
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
55.4
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
55.3
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
55.1
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
54.9
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
54.9
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
54.8
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
54.6
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
54.1
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
54.0
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
53.2
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
53.2
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
53.1
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
52.5
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
52.4
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
52.3
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
51.6
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
51.6
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
51.5
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
51.4
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
51.2
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
50.8
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
50.8
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
50.5
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
50.2
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
50.2
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
49.7
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
49.6
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
49.5
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
49.4
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
49.3
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
48.8
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
48.7
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
48.5
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
48.4
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
48.1
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
46.9
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
46.6
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
45.4
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
45.2
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
44.3
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
43.3
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
43.0
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
42.0
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
41.9
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
41.9
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
41.9
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
40.9
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
40.9
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
40.8
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
39.7
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
39.7
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
39.6
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
39.4
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
39.1
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
38.3
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
37.4
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
37.0
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
35.9
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
35.4
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
34.3
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
32.6
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
31.1
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
30.4
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
29.3
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
HNRNPU is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
56.4
Number of samples
231
Samples
Sample
Description
TPM
DO45193
0 years, female, NA, stage:4, dead, 120 days
128.6
DO45279
0 years, male, NA, stage:3, alive, 1290 days
113.8
DO45145
0 years, male, NA, stage:3, dead, 60 days
108.1
DO50815
0 years, male, NA, stage:3, alive, 150 days
106.3
DO48732
0 years, male, NA, stage:3, alive, 630 days
104.6
DO45205
0 years, female, NA, stage:2, dead, 90 days
104.5
DO45185
0 years, male, NA, stage:2, alive, 600 days
99.0
DO45189
0 years, female, NA, stage:2, alive, 1200 days
97.4
DO45213
0 years, male, NA, stage:1, alive, 1200 days
96.8
DO23521
0 years, male, NA, stage:3, alive, 1110 days
95.5
DO45275
0 years, male, NA, stage:3, dead, 10 days
95.3
DO48746
0 years, male, NA, stage:3, alive, 570 days
95.1
DO48757
0 years, female, NA, stage:3, alive, 480 days
94.5
DO45239
0 years, male, NA, stage:2, alive, 870 days
91.7
DO45251
0 years, female, NA, stage:2, alive, 900 days
90.7
DO45259
0 years, male, NA, stage:3, alive, 330 days
90.3
DO45127
0 years, male, NA, stage:3, dead, 420 days
89.7
DO45267
0 years, male, NA, stage:3, dead, 570 days
88.1
DO45287
0 years, male, NA, stage:1, alive, 390 days
85.8
DO45117
0 years, female, NA, stage:2, dead, 1110 days
84.3
DO50857
0 years, male, NA, stage:2, alive, 210 days
82.2
DO23524
0 years, female, NA, stage:2, alive, 1050 days
80.8
DO48681
0 years, male, NA, stage:2, alive, 900 days
80.7
DO50799
0 years, female, NA, stage:2, alive, 540 days
80.7
DO23513
0 years, male, NA, stage:3, alive, 1200 days
79.7
DO45155
0 years, male, NA, stage:2, alive, 2160 days
79.1
DO48697
0 years, female, NA, stage:2, dead, 810 days
78.6
DO45203
0 years, female, NA, stage:2, alive, 1170 days
78.2
DO45137
0 years, male, NA, stage:1, alive, 1320 days
78.1
DO48682
0 years, female, NA, stage:3, dead, 120 days
77.2
DO45269
0 years, male, NA, stage:3, alive, 750 days
76.7
DO50844
0 years, male, NA, stage:4, alive, 300 days
76.6
DO50778
0 years, male, NA, stage:4, alive, 630 days
76.5
DO45277
0 years, male, NA, stage:3, alive, 600 days
75.9
DO23525
0 years, male, NA, stage:4, alive, 1050 days
75.4
DO23529
0 years, male, NA, stage:4, alive, 930 days
74.6
DO48720
0 years, female, NA, stage:2, alive, 570 days
74.3
DO45139
0 years, male, NA, stage:3, alive, 1320 days
74.0
DO23543
0 years, male, NA, stage:2, alive, 1020 days
74.0
DO45305
0 years, male, NA, stage:4, alive, 300 days
74.0
DO45283
0 years, male, NA, stage:3, alive, 510 days
73.9
DO45245
0 years, female, NA, stage:2, dead, 240 days
73.5
DO23542
0 years, male, NA, stage:3, alive, 960 days
72.4
DO45187
0 years, female, NA, stage:1, alive, 1260 days
72.3
DO45265
0 years, male, NA, stage:3, alive, 1020 days
72.3
DO45303
0 years, female, NA, stage:3, alive, 990 days
72.2
DO45211
0 years, male, NA, stage:3, alive, 240 days
72.1
DO45209
0 years, male, NA, stage:4, alive, 1350 days
71.7
DO50820
0 years, female, NA, stage:3, alive, 510 days
71.6
DO45263
0 years, male, NA, stage:3, dead, 270 days
71.2
DO50802
0 years, male, NA, stage:2, alive, 930 days
70.9
DO45091
0 years, male, NA, stage:2, dead, 1320 days
70.8
DO45299
0 years, female, NA, stage:1, alive, 1440 days
70.8
DO23523
0 years, male, NA, stage:3, alive, 1080 days
70.7
DO45225
0 years, male, NA, stage:1, alive, 1050 days
70.6
DO23539
0 years, male, NA, stage:1, alive, 1110 days
70.3
DO45281
0 years, male, NA, stage:4, alive, 750 days
69.3
DO48728
0 years, female, NA, stage:2, alive, 150 days
69.1
DO45221
0 years, female, NA, stage:4, dead, 390 days
68.7
DO45121
0 years, male, NA, stage:3, alive, 1530 days
68.4
DO23514
0 years, male, NA, stage:2, alive, 1290 days
68.4
DO45093
0 years, male, NA, stage:2, dead, 720 days
68.3
DO23519
0 years, male, NA, stage:3, alive, 630 days
68.0
DO48704
0 years, female, NA, stage:3, alive, 750 days
66.9
DO45157
0 years, male, NA, stage:2, alive, 1980 days
66.9
DO50791
0 years, female, NA, stage:1, dead, 480 days
66.5
DO45257
0 years, male, NA, stage:3, alive, 810 days
66.4
DO45253
0 years, male, NA, stage:2, alive, 870 days
66.2
DO45243
0 years, female, NA, stage:3, alive, 930 days
66.2
DO45249
0 years, male, NA, stage:1, alive, 630 days
66.1
DO45219
0 years, male, NA, stage:2, alive, 1080 days
65.9
DO45159
0 years, male, NA, stage:3, alive, 1470 days
65.8
DO45123
0 years, female, NA, stage:2, dead, 570 days
65.7
DO45231
0 years, male, NA, stage:2, alive, 930 days
65.7
DO48706
0 years, male, NA, stage:2, alive, 870 days
65.4
DO50829
0 years, male, NA, stage:3, alive, 570 days
65.1
DO50850
0 years, male, NA, stage:3, alive, 720 days
64.9
DO45289
0 years, female, NA, stage:3, alive, 360 days
64.7
DO48737
0 years, male, NA, stage:1, alive, 720 days
64.1
DO45307
0 years, female, NA, stage:4, dead, 240 days
63.2
DO45207
0 years, male, NA, stage:1, alive, 1050 days
62.6
DO23509
0 years, male, NA, stage:3, dead, 780 days
62.3
DO45235
0 years, female, NA, stage:1, alive, 900 days
62.3
DO45163
0 years, male, NA, stage:2, alive, 960 days
61.7
DO23510
0 years, female, NA, stage:2, alive, 870 days
61.4
DO45119
0 years, male, NA, stage:3, dead, 510 days
61.2
DO45129
0 years, male, NA, stage:3, alive, 1470 days
61.0
DO23530
0 years, male, NA, stage:4, dead, 180 days
60.5
DO23537
0 years, male, NA, stage:2, dead, 900 days
60.4
DO50803
0 years, female, NA, stage:1, alive, 540 days
60.2
DO45217
0 years, female, NA, stage:3, dead, 270 days
60.0
DO48730
0 years, female, NA, stage:2, alive, 630 days
59.9
DO48733
0 years, male, NA, stage:2, alive, 600 days
59.8
DO23545
0 years, male, NA, stage:2, dead, 570 days
59.8
DO23528
0 years, female, NA, stage:2, alive, 1020 days
59.6
DO23546
0 years, male, NA, stage:2, alive, 1050 days
59.4
DO23526
0 years, male, NA, stage:3, alive, 1050 days
59.1
DO45131
0 years, male, NA, stage:4, dead, 360 days
58.3
DO23541
0 years, male, NA, stage:2, alive, 930 days
58.3
DO50811
0 years, male, NA, stage:1, alive, 450 days
57.9
DO45247
0 years, female, NA, stage:2, alive, 210 days
57.3
DO48695
0 years, male, NA, stage:2, alive, 720 days
57.3
DO45092
0 years, male, NA, stage:4, dead, 1200 days
57.2
DO45297
0 years, female, NA, stage:4, dead, 1260 days
57.0
DO45099
0 years, male, NA, stage:3, alive, 1590 days
56.9
DO50783
0 years, male, NA, stage:3, alive, 480 days
56.9
DO23536
0 years, male, NA, stage:2, alive, 930 days
56.8
DO23533
0 years, male, NA, stage:2, alive, 900 days
56.5
DO23515
0 years, male, NA, stage:2, alive, 1230 days
56.1
DO50808
0 years, male, NA, stage:2, alive, 570 days
56.1
DO48736
0 years, female, NA, stage:1, alive, 600 days
55.8
DO45237
0 years, male, NA, stage:2, alive, 900 days
55.8
DO48751
0 years, male, NA, stage:2, dead, 480 days
55.5
DO50793
0 years, male, NA, stage:4, alive, 540 days
55.1
DO48672
0 years, male, NA, stage:2, alive, 450 days
55.0
DO23549
0 years, male, NA, stage:3, alive, 990 days
54.8
DO45273
0 years, male, NA, stage:2, alive, 480 days
53.9
DO48717
0 years, male, NA, stage:4, dead, 180 days
53.7
DO45183
0 years, female, NA, stage:2, dead, 570 days
53.0
DO48701
0 years, male, NA, stage:2, alive, 780 days
53.0
DO45227
0 years, female, NA, stage:2, alive, 1020 days
52.9
DO45161
0 years, male, NA, stage:2, dead, 540 days
52.7
DO23516
0 years, male, NA, stage:3, dead, 20 days
52.5
DO50804
0 years, male, NA, stage:2, alive, 720 days
52.4
DO45113
0 years, male, NA, stage:3, alive, 1560 days
52.4
DO50774
0 years, female, NA, stage:2, alive, 720 days
52.2
DO23552
0 years, female, NA, stage:1, alive, 810 days
52.1
DO23512
0 years, male, NA, stage:1, alive, 1260 days
51.9
DO23547
0 years, male, NA, stage:1, alive, 1020 days
51.9
DO48712
0 years, male, NA, stage:2, alive, 810 days
51.7
DO45301
0 years, male, NA, stage:2, dead, 1440 days
51.7
DO45179
0 years, female, NA, stage:2, alive, 600 days
51.5
DO50798
0 years, male, NA, stage:3, dead, 30 days
51.5
DO48677
0 years, male, NA, stage:3, alive, 1140 days
51.2
DO50859
0 years, male, NA, stage:2, alive, 180 days
50.7
DO45223
0 years, male, NA, stage:4, alive, 1020 days
50.1
DO48723
0 years, male, NA, stage:1, alive, 600 days
49.5
DO23544
0 years, male, NA, stage:2, alive, 960 days
49.4
DO45165
0 years, male, NA, stage:2, alive, 690 days
49.4
DO50809
0 years, male, NA, stage:3, dead, 720 days
49.1
DO48743
0 years, female, NA, stage:2, alive, 570 days
48.5
DO45103
0 years, male, NA, stage:3, alive, 450 days
48.4
DO50806
0 years, male, NA, stage:4, alive, 540 days
48.3
DO45133
0 years, male, NA, stage:3, dead, 660 days
48.1
DO45233
0 years, male, NA, stage:3, alive, 900 days
48.0
DO50822
0 years, male, NA, stage:2, alive, 510 days
47.8
DO50807
0 years, male, NA, stage:1, alive, 540 days
47.3
DO48700
0 years, female, NA, stage:2, alive, 810 days
47.3
DO50800
0 years, male, NA, stage:2, alive, 510 days
47.2
DO23518
0 years, male, NA, stage:2, alive, 1320 days
47.2
DO50855
0 years, male, NA, stage:2, alive, 570 days
47.1
DO23535
0 years, male, NA, stage:1, alive, 960 days
47.0
DO48725
0 years, male, NA, stage:1, alive, 780 days
47.0
DO48761
0 years, male, NA, stage:2, alive, 870 days
47.0
DO50840
0 years, male, NA, stage:2, alive, 330 days
46.7
DO50785
0 years, male, NA, stage:4, dead, 90 days
46.4
DO48679
0 years, male, NA, stage:2, alive, 1200 days
45.4
DO45135
0 years, male, NA, stage:1, alive, 1410 days
45.3
DO45261
0 years, male, NA, stage:3, alive, 990 days
45.0
DO45171
0 years, male, NA, stage:3, alive, 600 days
44.8
DO48719
0 years, male, NA, stage:2, alive, 690 days
44.4
DO23551
0 years, male, NA, stage:3, dead, 150 days
44.3
DO45199
0 years, female, NA, stage:2, alive, 1350 days
44.1
DO45173
0 years, male, NA, stage:3, alive, 1170 days
44.0
DO45153
0 years, female, NA, stage:2, alive, 1380 days
43.5
DO48721
0 years, female, NA, stage:1, alive, 900 days
43.4
DO45177
0 years, female, NA, stage:3, alive, 1260 days
42.8
DO45095
0 years, male, NA, stage:2, alive, 1620 days
42.8
DO23538
0 years, male, NA, stage:2, alive, 450 days
42.8
DO45115
0 years, male, NA, stage:2, alive, 840 days
42.6
DO23527
0 years, male, NA, stage:1, alive, 1050 days
42.0
DO45141
0 years, male, NA, stage:2, alive, 1320 days
41.7
DO48741
0 years, male, NA, stage:3, alive, 240 days
41.7
DO45096
0 years, male, NA, stage:2, dead, 1290 days
41.5
DO50787
0 years, male, NA, stage:3, alive, 480 days
41.4
DO227801
0 years, female, NA, stage:1, alive, 660 days
40.9
DO45241
0 years, male, NA, stage:1, alive, 1080 days
40.7
DO45175
0 years, male, NA, stage:2, alive, 1140 days
40.6
DO45255
0 years, male, NA, stage:3, alive, 720 days
40.4
DO50805
0 years, male, NA, stage:2, alive, 690 days
40.2
DO50832
0 years, male, NA, stage:3, alive, 90 days
40.0
DO45107
0 years, female, NA, stage:2, alive, 1710 days
39.8
DO50825
0 years, male, NA, stage:2, alive, 390 days
39.7
DO48715
0 years, female, NA, stage:2, dead, 690 days
39.1
DO45111
0 years, male, NA, stage:2, alive, 1590 days
39.0
DO45097
0 years, male, NA, stage:3, alive, 1620 days
38.7
DO50814
0 years, male, NA, stage:3, alive, 420 days
38.7
DO50819
0 years, female, NA, stage:2, alive, 510 days
38.4
DO45169
0 years, male, NA, stage:3, alive, 1350 days
38.3
DO23508
0 years, female, NA, stage:2, alive, 390 days
38.2
DO23550
0 years, male, NA, stage:1, alive, 990 days
37.7
DO50818
0 years, male, NA, stage:2, alive, 510 days
37.4
DO45191
0 years, female, NA, stage:2, alive, 1200 days
36.3
DO45181
0 years, female, NA, stage:2, alive, 1200 days
36.2
DO48727
0 years, female, NA, stage:2, dead, 390 days
36.0
DO50789
0 years, female, NA, stage:2, alive, 570 days
35.8
DO48747
0 years, male, NA, stage:3, alive, 540 days
35.5
DO23548
0 years, female, NA, stage:1, alive, 840 days
35.3
DO50776
0 years, male, NA, stage:1, alive, 690 days
34.7
DO45285
0 years, male, NA, stage:3, alive, 480 days
34.5
DO48716
0 years, male, NA, stage:2, alive, 720 days
34.4
DO45143
0 years, male, NA, stage:3, alive, 1290 days
34.0
DO50813
0 years, male, NA, stage:2, alive, 420 days
33.9
DO45229
0 years, male, NA, stage:1, alive, 990 days
33.7
DO45094
0 years, male, NA, stage:3, alive, 1650 days
33.2
DO23531
0 years, female, NA, stage:3, alive, 900 days
33.1
DO48760
0 years, female, NA, stage:2, alive, 690 days
33.0
DO50817
0 years, male, NA, stage:2, alive, 390 days
32.9
DO45201
0 years, male, NA, stage:1, alive, 900 days
32.8
DO45197
0 years, male, NA, stage:2, alive, 1170 days
32.8
DO23517
0 years, male, NA, stage:2, alive, 1200 days
32.5
DO48759
0 years, male, NA, stage:3, alive, 720 days
32.1
DO23534
0 years, male, NA, stage:2, alive, 840 days
32.0
DO45195
0 years, male, NA, stage:1, alive, 390 days
32.0
DO48693
0 years, male, NA, stage:2, alive, 900 days
31.7
DO50816
0 years, male, NA, stage:2, alive, 390 days
30.6
DO23540
0 years, male, NA, stage:1, alive, 750 days
29.4
DO227643
0 years, male, NA, stage:2, alive, 1260 days
29.3
DO50839
0 years, female, NA, stage:3, alive, 330 days
28.7
DO45215
0 years, male, NA, stage:2, alive, 1170 days
28.6
DO45125
0 years, male, NA, stage:3, alive, 1680 days
27.9
DO45149
0 years, female, NA, stage:2, alive, 1260 days
27.7
DO48742
0 years, male, NA, stage:2, alive, 600 days
26.6
DO23511
0 years, female, NA, stage:3, dead, 180 days
26.2
DO45101
0 years, male, NA, stage:2, alive, 1680 days
26.1
DO45167
0 years, male, NA, stage:2, dead, 1440 days
25.7
DO50845
0 years, male, NA, stage:3, alive, 210 days
24.8
DO45105
0 years, male, NA, stage:1, alive, 1680 days
24.7
DO45109
0 years, male, NA, stage:2, alive, 1590 days
20.8
DO23532
0 years, female, NA, stage:1, alive, 960 days
19.3
DO48674
0 years, male, NA, stage:2, alive, 1260 days
18.7
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
131
Tumor
1.0
743
Tumor
0.9
523
Tumor
0.9
977
Tumor
0.9
967
Tumor
0.8
497
Tumor
0.8
965
Tumor
0.8
1031
Tumor
0.7
877
Tumor
0.7
951
Tumor
0.7
411
Tumor
0.6
661
Tumor
0.6
983
Tumor
0.6
285
Tumor
0.6
351
Tumor
0.6
921
Tumor
0.6
865
Tumor
0.6
975
Tumor
0.5
211
Tumor
0.5
355
Tumor
0.5
487
Tumor
0.5
817
Tumor
0.5
881
Tumor
0.5
517
Tumor
0.5
463
Tumor
0.5
443
Tumor
0.5
1021
Tumor
0.5
963
Tumor
0.5
537
Tumor
0.5
727
Tumor
0.5
425
Tumor
0.5
112
Tumor
0.5
385
Tumor
0.4
527
Tumor
0.4
957
Tumor
0.4
123
Tumor
0.4
545
Tumor
0.4
777
Tumor
0.4
471
Tumor
0.4
413
Tumor
0.4
533
Tumor
0.4
1013
Tumor
0.4
737
Tumor
0.4
271
Tumor
0.4
535
Tumor
0.4
685
Tumor
0.4
937
Tumor
0.4
431
Tumor
0.4
1041
Tumor
0.4
367
Tumor
0.4
331
Tumor
0.3
813
Tumor
0.3
647
Tumor
0.3
665
Tumor
0.3
171
Tumor
0.3
313
Tumor
0.3
715
Tumor
0.3
357
Tumor
0.3
447
Tumor
0.3
943
Tumor
0.3
297
Tumor
0.3
923
Tumor
0.3
697
Tumor
0.3
515
Tumor
0.3
461
Tumor
0.3
553
Tumor
0.3
867
Tumor
0.3
473
Tumor
0.3
724
Normal
0.3
493
Tumor
0.3
557
Tumor
0.3
861
Tumor
0.3
883
Tumor
0.3
911
Tumor
0.3
491
Tumor
0.3
815
Tumor
0.3
567
Tumor
0.3
277
Tumor
0.2
141
Tumor
0.2
671
Tumor
0.2
635
Tumor
0.2
267
Tumor
0.2
695
Tumor
0.2
135
Tumor
0.2
477
Tumor
0.2
814
Normal
0.2
663
Tumor
0.2
467
Tumor
0.2
283
Tumor
0.2
387
Tumor
0.2
741
Tumor
0.2
363
Tumor
0.2
785
Tumor
0.2
221
Tumor
0.2
445
Tumor
0.2
483
Tumor
0.2
1025
Tumor
0.2
161
Tumor
0.2
755
Tumor
0.2
125
Tumor
0.1
873
Tumor
0.1
391
Tumor
0.1
433
Tumor
0.1
823
Tumor
0.1
1043
Tumor
0.1
455
Tumor
0.1
1015
Tumor
0.1
917
Tumor
0.1
227
Tumor
0.1
863
Tumor
0.1
375
Tumor
0.1
913
Tumor
0.1
925
Tumor
0.1
525
Tumor
0.1
451
Tumor
0.1
187
Tumor
0.1
915
Tumor
0.1
953
Tumor
0.1
713
Tumor
0.1
427
Tumor
0.1
343
Tumor
0.1
393
Tumor
0.1
538
Normal
0.0
231
Tumor
0.0
571
Tumor
0.0
492
Normal
0.0
1045
Tumor
0.0
524
Normal
0.0
851
Tumor
0.0
744
Normal
0.0
415
Tumor
0.0
383
Tumor
0.0
213
Tumor
0.0
721
Tumor
0.0
113
Tumor
0.0
223
Tumor
0.0
311
Tumor
0.0
573
Tumor
0.0
857
Tumor
0.0
465
Tumor
0.0
185
Tumor
0.0
563
Tumor
0.0
878
Normal
0.0
341
Tumor
0.0
955
Tumor
0.0
641
Tumor
0.0
481
Tumor
-0.1
217
Tumor
-0.1
423
Tumor
-0.1
137
Tumor
-0.1
261
Tumor
-0.1
536
Normal
-0.1
966
Normal
-0.1
395
Tumor
-0.1
513
Tumor
-0.1
421
Tumor
-0.1
412
Normal
-0.1
498
Normal
-0.1
954
Normal
-0.1
147
Tumor
-0.1
257
Tumor
-0.1
516
Normal
-0.1
478
Normal
-0.1
984
Normal
-0.1
554
Normal
-0.1
534
Normal
-0.1
444
Normal
-0.1
938
Normal
-0.1
327
Tumor
-0.1
981
Tumor
-0.1
384
Normal
-0.2
127
Tumor
-0.2
882
Normal
-0.2
365
Tumor
-0.2
284
Normal
-0.2
361
Tumor
-0.2
488
Normal
-0.2
916
Normal
-0.2
1014
Normal
-0.2
124
Normal
-0.2
922
Normal
-0.2
352
Normal
-0.2
546
Normal
-0.2
191
Tumor
-0.2
968
Normal
-0.2
952
Normal
-0.2
686
Normal
-0.2
746
Normal
-0.2
224
Normal
-0.2
1028
Normal
-0.2
964
Normal
-0.2
142
Normal
-0.2
435
Tumor
-0.2
528
Normal
-0.2
518
Normal
-0.2
866
Normal
-0.2
672
Normal
-0.2
472
Normal
-0.2
924
Normal
-0.2
944
Normal
-0.2
666
Normal
-0.2
778
Normal
-0.2
268
Normal
-0.2
192
Normal
-0.2
698
Normal
-0.2
745
Tumor
-0.2
912
Normal
-0.2
212
Normal
-0.2
664
Normal
-0.2
484
Normal
-0.2
662
Normal
-0.2
884
Normal
-0.2
448
Normal
-0.2
386
Normal
-0.2
298
Normal
-0.2
728
Normal
-0.2
818
Normal
-0.2
958
Normal
-0.2
858
Normal
-0.2
738
Normal
-0.2
918
Normal
-0.2
714
Normal
-0.2
396
Normal
-0.2
228
Normal
-0.2
874
Normal
-0.2
716
Normal
-0.2
514
Normal
-0.2
462
Normal
-0.2
982
Normal
-0.2
364
Normal
-0.2
976
Normal
-0.2
494
Normal
-0.2
978
Normal
-0.2
696
Normal
-0.2
353
Tumor
-0.2
742
Normal
-0.2
344
Normal
-0.3
434
Normal
-0.3
146
Normal
-0.3
1032
Normal
-0.3
824
Normal
-0.3
195
Tumor
-0.3
1026
Normal
-0.3
366
Normal
-0.3
482
Normal
-0.3
145
Tumor
-0.3
474
Normal
-0.3
376
Normal
-0.3
914
Normal
-0.3
188
Normal
-0.3
114
Normal
-0.3
526
Normal
-0.3
864
Normal
-0.3
368
Normal
-0.3
1016
Normal
-0.3
786
Normal
-0.3
342
Normal
-0.3
1027
Tumor
-0.3
648
Normal
-0.3
416
Normal
-0.3
956
Normal
-0.3
1044
Normal
-0.3
926
Normal
-0.3
852
Normal
-0.3
128
Normal
-0.3
138
Normal
-0.3
362
Normal
-0.3
262
Normal
-0.3
617
Tumor
-0.3
111
Normal
-0.3
222
Normal
-0.3
392
Normal
-0.3
456
Normal
-0.3
452
Normal
-0.3
436
Normal
-0.3
464
Normal
-0.3
328
Normal
-0.3
1046
Normal
-0.3
394
Normal
-0.3
136
Normal
-0.3
126
Normal
-0.3
816
Normal
-0.3
862
Normal
-0.3
286
Normal
-0.3
446
Normal
-0.3
756
Normal
-0.3
723
Tumor
-0.3
388
Normal
-0.3
132
Normal
-0.3
162
Normal
-0.3
722
Normal
-0.3
627
Tumor
-0.3
312
Normal
-0.3
278
Normal
-0.3
356
Normal
-0.3
232
Normal
-0.3
148
Normal
-0.4
196
Normal
-0.4
615
Tumor
-0.4
214
Normal
-0.4
272
Normal
-0.4
258
Normal
-0.4
466
Normal
-0.4
218
Normal
-0.4
1022
Normal
-0.4
572
Normal
-0.4
186
Normal
-0.4
332
Normal
-0.4
172
Normal
-0.4
354
Normal
-0.4
468
Normal
-0.4
636
Normal
-0.4
426
Normal
-0.4
422
Normal
-0.4
868
Normal
-0.4
1042
Normal
-0.4
358
Normal
-0.4
558
Normal
-0.4
314
Normal
-0.4
574
Normal
-0.4
568
Normal
-0.4
414
Normal
-0.4
564
Normal
-0.5
628
Normal
-0.5
428
Normal
-0.5
424
Normal
-0.5
618
Normal
-0.5
642
Normal
-0.5
616
Normal
-0.6
432
Normal
-0.6
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
