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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SCOC is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
21.8
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
91.2
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
56.1
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
52.8
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
51.2
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
48.8
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
46.6
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
46.3
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
46.0
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
45.4
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
45.1
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
44.4
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
43.2
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
41.6
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
41.2
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
39.3
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
39.2
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
38.9
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
38.5
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
38.3
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
38.3
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
38.0
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
37.9
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
37.8
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
37.5
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
37.4
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
37.3
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
37.2
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
37.1
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
37.0
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
36.7
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
36.7
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
36.3
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
36.3
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
36.1
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
35.6
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
35.4
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
34.9
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
34.9
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
34.7
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
34.5
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
34.4
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
34.4
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
33.6
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
33.6
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
33.4
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
33.3
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
33.0
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
32.9
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
32.7
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
32.6
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
32.5
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
32.4
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
32.3
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
32.2
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
31.4
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
31.3
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
31.2
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
31.1
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
31.0
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
30.9
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
30.7
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
30.7
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
30.6
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
30.6
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
30.5
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
30.3
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
30.3
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
30.1
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
30.0
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
29.9
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
29.6
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
29.3
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
29.2
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
28.9
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
28.8
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
28.8
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
28.8
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
28.6
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
28.4
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
28.3
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
28.0
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
28.0
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
28.0
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
27.9
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
27.9
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
27.7
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
27.5
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
27.5
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
27.4
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
27.4
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
27.3
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
27.3
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
27.1
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
27.1
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
27.0
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
26.9
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
26.6
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
26.5
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
26.4
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
26.3
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
26.3
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
26.0
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
26.0
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
25.9
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
25.9
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
25.9
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
25.8
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
25.6
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
25.4
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
25.3
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
25.3
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
25.3
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
25.2
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
25.2
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
25.2
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
25.2
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
25.0
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
24.9
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
24.8
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
24.7
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
24.5
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
24.5
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
24.4
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
24.4
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
24.2
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
24.1
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
24.0
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
24.0
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
23.9
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
23.9
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
23.9
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
23.9
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
23.8
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
23.8
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
23.7
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
23.7
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
23.5
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
23.5
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
23.4
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
23.3
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
23.3
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
23.1
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
23.1
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
22.9
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
22.9
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
22.9
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
22.8
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
22.7
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
22.7
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
22.6
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
22.6
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
22.4
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
22.3
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
22.2
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
22.2
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
22.1
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
21.9
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
21.9
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
21.8
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
21.7
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
21.7
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
21.7
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
21.7
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
21.6
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
21.5
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
21.4
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
21.4
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
21.2
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
21.2
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
21.1
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
20.9
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
20.8
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
20.8
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
20.6
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
20.6
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
20.6
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
20.5
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
20.5
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
20.4
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
20.4
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
20.3
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
20.2
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
20.2
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
20.2
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
20.1
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
20.0
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
19.9
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
19.9
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
19.9
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
19.8
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
19.7
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
19.6
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
19.6
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
19.5
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
19.4
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
19.3
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
19.3
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
19.2
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
19.2
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
19.1
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
19.0
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
19.0
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
19.0
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
19.0
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
18.9
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
18.9
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
18.8
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
18.7
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
18.7
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
18.7
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
18.6
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
18.6
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
18.6
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
18.5
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
18.3
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
18.3
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
18.1
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
18.1
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
18.1
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
18.0
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
18.0
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
17.9
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
17.9
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
17.8
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
17.8
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
17.7
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
17.7
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
17.6
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
17.4
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
17.3
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
17.3
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
17.1
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
17.0
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
16.7
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
16.7
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
16.7
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
16.6
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
16.6
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
16.6
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
16.5
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
16.5
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
16.5
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
16.5
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
16.4
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
16.4
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
16.4
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
16.3
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
16.2
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
16.1
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
16.1
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
16.0
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
16.0
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
15.9
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
15.9
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
15.8
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
15.7
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
15.7
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
15.7
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
15.6
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
15.6
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
15.6
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
15.4
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
15.3
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
15.2
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
15.1
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
15.1
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
15.0
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
15.0
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
14.8
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
14.8
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
14.8
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
14.7
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
14.6
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
14.6
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
14.6
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
14.6
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
14.5
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
14.5
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
14.5
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
14.5
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
14.4
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
14.4
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
14.4
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
14.2
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
14.2
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
14.2
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
14.2
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
14.1
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
14.1
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
14.0
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
14.0
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
14.0
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
13.6
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
13.6
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
13.5
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
13.5
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
12.9
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
12.8
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
12.8
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
12.8
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
12.8
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
12.8
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
12.7
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
12.6
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
12.5
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
12.4
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
12.4
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
12.2
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
12.1
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
12.0
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
12.0
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
11.8
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
11.7
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
11.6
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
11.5
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
11.4
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
11.4
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
11.4
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
11.1
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
10.9
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
10.9
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
10.8
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
10.8
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
10.8
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
10.8
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
10.7
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
10.5
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
10.5
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
10.4
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
10.4
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
10.2
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
10.1
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
10.1
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
10.1
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
10.0
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
9.9
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
9.9
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
9.8
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
9.5
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
9.4
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
9.4
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
9.3
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
9.3
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
9.2
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
9.1
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
9.0
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
9.0
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
8.9
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
8.8
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
8.6
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
8.3
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
8.2
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
7.9
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
7.7
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
7.2
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
7.1
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
6.4
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
5.6
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
4.8
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
3.5
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
2.9
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SCOC is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
28.0
Number of samples
231
Samples
Sample
Description
TPM
DO45119
0 years, male, NA, stage:3, dead, 510 days
73.6
DO45299
0 years, female, NA, stage:1, alive, 1440 days
71.8
DO45257
0 years, male, NA, stage:3, alive, 810 days
69.7
DO45105
0 years, male, NA, stage:1, alive, 1680 days
60.7
DO45223
0 years, male, NA, stage:4, alive, 1020 days
58.0
DO50845
0 years, male, NA, stage:3, alive, 210 days
57.6
DO45211
0 years, male, NA, stage:3, alive, 240 days
52.4
DO45145
0 years, male, NA, stage:3, dead, 60 days
51.9
DO45107
0 years, female, NA, stage:2, alive, 1710 days
49.5
DO50840
0 years, male, NA, stage:2, alive, 330 days
46.9
DO23514
0 years, male, NA, stage:2, alive, 1290 days
46.1
DO45259
0 years, male, NA, stage:3, alive, 330 days
45.4
DO50855
0 years, male, NA, stage:2, alive, 570 days
45.3
DO45297
0 years, female, NA, stage:4, dead, 1260 days
45.2
DO45185
0 years, male, NA, stage:2, alive, 600 days
44.5
DO45197
0 years, male, NA, stage:2, alive, 1170 days
44.2
DO45287
0 years, male, NA, stage:1, alive, 390 days
43.9
DO45267
0 years, male, NA, stage:3, dead, 570 days
43.6
DO45255
0 years, male, NA, stage:3, alive, 720 days
42.8
DO45161
0 years, male, NA, stage:2, dead, 540 days
42.5
DO45135
0 years, male, NA, stage:1, alive, 1410 days
42.4
DO23513
0 years, male, NA, stage:3, alive, 1200 days
42.2
DO45253
0 years, male, NA, stage:2, alive, 870 days
40.5
DO45289
0 years, female, NA, stage:3, alive, 360 days
40.5
DO23525
0 years, male, NA, stage:4, alive, 1050 days
40.4
DO48717
0 years, male, NA, stage:4, dead, 180 days
40.2
DO50774
0 years, female, NA, stage:2, alive, 720 days
40.1
DO50799
0 years, female, NA, stage:2, alive, 540 days
39.6
DO23552
0 years, female, NA, stage:1, alive, 810 days
39.0
DO45237
0 years, male, NA, stage:2, alive, 900 days
38.4
DO50791
0 years, female, NA, stage:1, dead, 480 days
38.0
DO48759
0 years, male, NA, stage:3, alive, 720 days
37.8
DO45177
0 years, female, NA, stage:3, alive, 1260 days
37.4
DO45113
0 years, male, NA, stage:3, alive, 1560 days
37.1
DO45099
0 years, male, NA, stage:3, alive, 1590 days
36.8
DO45251
0 years, female, NA, stage:2, alive, 900 days
36.7
DO23523
0 years, male, NA, stage:3, alive, 1080 days
36.6
DO45245
0 years, female, NA, stage:2, dead, 240 days
36.5
DO48751
0 years, male, NA, stage:2, dead, 480 days
35.7
DO50798
0 years, male, NA, stage:3, dead, 30 days
35.4
DO45129
0 years, male, NA, stage:3, alive, 1470 days
35.1
DO48761
0 years, male, NA, stage:2, alive, 870 days
35.1
DO45153
0 years, female, NA, stage:2, alive, 1380 days
35.0
DO50809
0 years, male, NA, stage:3, dead, 720 days
34.9
DO45235
0 years, female, NA, stage:1, alive, 900 days
34.5
DO23547
0 years, male, NA, stage:1, alive, 1020 days
34.3
DO50785
0 years, male, NA, stage:4, dead, 90 days
34.2
DO50802
0 years, male, NA, stage:2, alive, 930 days
34.2
DO45127
0 years, male, NA, stage:3, dead, 420 days
34.2
DO45103
0 years, male, NA, stage:3, alive, 450 days
34.0
DO23540
0 years, male, NA, stage:1, alive, 750 days
33.9
DO48737
0 years, male, NA, stage:1, alive, 720 days
33.9
DO23510
0 years, female, NA, stage:2, alive, 870 days
33.9
DO48720
0 years, female, NA, stage:2, alive, 570 days
33.5
DO45117
0 years, female, NA, stage:2, dead, 1110 days
33.3
DO48704
0 years, female, NA, stage:3, alive, 750 days
33.2
DO45227
0 years, female, NA, stage:2, alive, 1020 days
33.2
DO45249
0 years, male, NA, stage:1, alive, 630 days
33.2
DO23541
0 years, male, NA, stage:2, alive, 930 days
33.0
DO50825
0 years, male, NA, stage:2, alive, 390 days
33.0
DO50808
0 years, male, NA, stage:2, alive, 570 days
32.7
DO23533
0 years, male, NA, stage:2, alive, 900 days
32.6
DO45143
0 years, male, NA, stage:3, alive, 1290 days
32.3
DO45096
0 years, male, NA, stage:2, dead, 1290 days
32.2
DO23526
0 years, male, NA, stage:3, alive, 1050 days
31.8
DO48757
0 years, female, NA, stage:3, alive, 480 days
31.6
DO48730
0 years, female, NA, stage:2, alive, 630 days
31.3
DO48712
0 years, male, NA, stage:2, alive, 810 days
31.0
DO45179
0 years, female, NA, stage:2, alive, 600 days
30.9
DO48723
0 years, male, NA, stage:1, alive, 600 days
30.7
DO45247
0 years, female, NA, stage:2, alive, 210 days
30.7
DO45283
0 years, male, NA, stage:3, alive, 510 days
30.7
DO48746
0 years, male, NA, stage:3, alive, 570 days
30.5
DO45203
0 years, female, NA, stage:2, alive, 1170 days
30.4
DO45261
0 years, male, NA, stage:3, alive, 990 days
30.3
DO50829
0 years, male, NA, stage:3, alive, 570 days
30.2
DO23534
0 years, male, NA, stage:2, alive, 840 days
30.2
DO48700
0 years, female, NA, stage:2, alive, 810 days
30.2
DO45219
0 years, male, NA, stage:2, alive, 1080 days
30.1
DO45171
0 years, male, NA, stage:3, alive, 600 days
29.9
DO48716
0 years, male, NA, stage:2, alive, 720 days
29.8
DO45201
0 years, male, NA, stage:1, alive, 900 days
29.7
DO50776
0 years, male, NA, stage:1, alive, 690 days
29.6
DO23529
0 years, male, NA, stage:4, alive, 930 days
29.5
DO50813
0 years, male, NA, stage:2, alive, 420 days
29.4
DO45199
0 years, female, NA, stage:2, alive, 1350 days
29.3
DO23550
0 years, male, NA, stage:1, alive, 990 days
29.2
DO45285
0 years, male, NA, stage:3, alive, 480 days
29.0
DO48719
0 years, male, NA, stage:2, alive, 690 days
29.0
DO45101
0 years, male, NA, stage:2, alive, 1680 days
28.8
DO48672
0 years, male, NA, stage:2, alive, 450 days
28.7
DO45231
0 years, male, NA, stage:2, alive, 930 days
28.6
DO50832
0 years, male, NA, stage:3, alive, 90 days
28.4
DO45301
0 years, male, NA, stage:2, dead, 1440 days
28.3
DO45169
0 years, male, NA, stage:3, alive, 1350 days
28.3
DO45131
0 years, male, NA, stage:4, dead, 360 days
28.1
DO45123
0 years, female, NA, stage:2, dead, 570 days
28.0
DO45307
0 years, female, NA, stage:4, dead, 240 days
27.9
DO23546
0 years, male, NA, stage:2, alive, 1050 days
27.9
DO45133
0 years, male, NA, stage:3, dead, 660 days
27.8
DO45305
0 years, male, NA, stage:4, alive, 300 days
27.8
DO45233
0 years, male, NA, stage:3, alive, 900 days
27.8
DO45149
0 years, female, NA, stage:2, alive, 1260 days
27.7
DO45239
0 years, male, NA, stage:2, alive, 870 days
27.4
DO23524
0 years, female, NA, stage:2, alive, 1050 days
27.3
DO48747
0 years, male, NA, stage:3, alive, 540 days
27.0
DO45141
0 years, male, NA, stage:2, alive, 1320 days
26.9
DO45155
0 years, male, NA, stage:2, alive, 2160 days
26.7
DO45092
0 years, male, NA, stage:4, dead, 1200 days
26.5
DO45115
0 years, male, NA, stage:2, alive, 840 days
26.5
DO45275
0 years, male, NA, stage:3, dead, 10 days
26.4
DO23508
0 years, female, NA, stage:2, alive, 390 days
26.4
DO45097
0 years, male, NA, stage:3, alive, 1620 days
26.4
DO45091
0 years, male, NA, stage:2, dead, 1320 days
26.3
DO45269
0 years, male, NA, stage:3, alive, 750 days
26.3
DO45215
0 years, male, NA, stage:2, alive, 1170 days
26.3
DO48727
0 years, female, NA, stage:2, dead, 390 days
26.2
DO45205
0 years, female, NA, stage:2, dead, 90 days
26.2
DO50816
0 years, male, NA, stage:2, alive, 390 days
26.0
DO23542
0 years, male, NA, stage:3, alive, 960 days
25.9
DO45157
0 years, male, NA, stage:2, alive, 1980 days
25.8
DO50806
0 years, male, NA, stage:4, alive, 540 days
25.6
DO45125
0 years, male, NA, stage:3, alive, 1680 days
25.6
DO45221
0 years, female, NA, stage:4, dead, 390 days
25.3
DO45183
0 years, female, NA, stage:2, dead, 570 days
25.3
DO45165
0 years, male, NA, stage:2, alive, 690 days
25.1
DO45137
0 years, male, NA, stage:1, alive, 1320 days
25.0
DO45279
0 years, male, NA, stage:3, alive, 1290 days
24.9
DO45243
0 years, female, NA, stage:3, alive, 930 days
24.8
DO45173
0 years, male, NA, stage:3, alive, 1170 days
24.7
DO45217
0 years, female, NA, stage:3, dead, 270 days
24.6
DO23535
0 years, male, NA, stage:1, alive, 960 days
24.6
DO45213
0 years, male, NA, stage:1, alive, 1200 days
24.5
DO48679
0 years, male, NA, stage:2, alive, 1200 days
24.4
DO50803
0 years, female, NA, stage:1, alive, 540 days
24.3
DO48697
0 years, female, NA, stage:2, dead, 810 days
24.2
DO48760
0 years, female, NA, stage:2, alive, 690 days
24.2
DO23515
0 years, male, NA, stage:2, alive, 1230 days
24.1
DO45277
0 years, male, NA, stage:3, alive, 600 days
24.0
DO23549
0 years, male, NA, stage:3, alive, 990 days
23.8
DO50822
0 years, male, NA, stage:2, alive, 510 days
23.8
DO48721
0 years, female, NA, stage:1, alive, 900 days
23.8
DO45195
0 years, male, NA, stage:1, alive, 390 days
23.7
DO48701
0 years, male, NA, stage:2, alive, 780 days
23.7
DO48736
0 years, female, NA, stage:1, alive, 600 days
23.6
DO45093
0 years, male, NA, stage:2, dead, 720 days
23.6
DO23532
0 years, female, NA, stage:1, alive, 960 days
23.6
DO23538
0 years, male, NA, stage:2, alive, 450 days
23.5
DO50793
0 years, male, NA, stage:4, alive, 540 days
23.3
DO45175
0 years, male, NA, stage:2, alive, 1140 days
23.3
DO45303
0 years, female, NA, stage:3, alive, 990 days
23.1
DO45189
0 years, female, NA, stage:2, alive, 1200 days
23.1
DO50805
0 years, male, NA, stage:2, alive, 690 days
22.9
DO45273
0 years, male, NA, stage:2, alive, 480 days
22.7
DO45241
0 years, male, NA, stage:1, alive, 1080 days
22.6
DO23516
0 years, male, NA, stage:3, dead, 20 days
22.6
DO23527
0 years, male, NA, stage:1, alive, 1050 days
22.6
DO50778
0 years, male, NA, stage:4, alive, 630 days
22.5
DO23521
0 years, male, NA, stage:3, alive, 1110 days
22.4
DO23537
0 years, male, NA, stage:2, dead, 900 days
22.4
DO45139
0 years, male, NA, stage:3, alive, 1320 days
22.2
DO48695
0 years, male, NA, stage:2, alive, 720 days
22.2
DO45281
0 years, male, NA, stage:4, alive, 750 days
21.9
DO45181
0 years, female, NA, stage:2, alive, 1200 days
21.9
DO48742
0 years, male, NA, stage:2, alive, 600 days
21.7
DO50800
0 years, male, NA, stage:2, alive, 510 days
21.7
DO23509
0 years, male, NA, stage:3, dead, 780 days
21.6
DO227801
0 years, female, NA, stage:1, alive, 660 days
21.5
DO48682
0 years, female, NA, stage:3, dead, 120 days
21.5
DO45163
0 years, male, NA, stage:2, alive, 960 days
21.5
DO48743
0 years, female, NA, stage:2, alive, 570 days
21.4
DO227643
0 years, male, NA, stage:2, alive, 1260 days
21.3
DO23519
0 years, male, NA, stage:3, alive, 630 days
21.2
DO50859
0 years, male, NA, stage:2, alive, 180 days
21.2
DO45263
0 years, male, NA, stage:3, dead, 270 days
21.1
DO45159
0 years, male, NA, stage:3, alive, 1470 days
21.0
DO45121
0 years, male, NA, stage:3, alive, 1530 days
20.9
DO23530
0 years, male, NA, stage:4, dead, 180 days
20.8
DO48728
0 years, female, NA, stage:2, alive, 150 days
20.8
DO50804
0 years, male, NA, stage:2, alive, 720 days
20.5
DO50789
0 years, female, NA, stage:2, alive, 570 days
20.4
DO48741
0 years, male, NA, stage:3, alive, 240 days
20.3
DO50818
0 years, male, NA, stage:2, alive, 510 days
20.3
DO45094
0 years, male, NA, stage:3, alive, 1650 days
20.1
DO45109
0 years, male, NA, stage:2, alive, 1590 days
20.0
DO45167
0 years, male, NA, stage:2, dead, 1440 days
19.7
DO23543
0 years, male, NA, stage:2, alive, 1020 days
19.6
DO23531
0 years, female, NA, stage:3, alive, 900 days
19.5
DO48732
0 years, male, NA, stage:3, alive, 630 days
19.5
DO45095
0 years, male, NA, stage:2, alive, 1620 days
19.3
DO50820
0 years, female, NA, stage:3, alive, 510 days
19.3
DO50811
0 years, male, NA, stage:1, alive, 450 days
19.0
DO23517
0 years, male, NA, stage:2, alive, 1200 days
18.9
DO23551
0 years, male, NA, stage:3, dead, 150 days
18.8
DO50857
0 years, male, NA, stage:2, alive, 210 days
18.6
DO48706
0 years, male, NA, stage:2, alive, 870 days
18.6
DO48725
0 years, male, NA, stage:1, alive, 780 days
18.6
DO23545
0 years, male, NA, stage:2, dead, 570 days
18.5
DO50815
0 years, male, NA, stage:3, alive, 150 days
18.4
DO48681
0 years, male, NA, stage:2, alive, 900 days
18.3
DO50844
0 years, male, NA, stage:4, alive, 300 days
18.3
DO48715
0 years, female, NA, stage:2, dead, 690 days
18.3
DO45111
0 years, male, NA, stage:2, alive, 1590 days
18.3
DO48674
0 years, male, NA, stage:2, alive, 1260 days
18.2
DO23518
0 years, male, NA, stage:2, alive, 1320 days
18.2
DO23512
0 years, male, NA, stage:1, alive, 1260 days
18.0
DO45225
0 years, male, NA, stage:1, alive, 1050 days
17.9
DO50783
0 years, male, NA, stage:3, alive, 480 days
17.8
DO50850
0 years, male, NA, stage:3, alive, 720 days
17.8
DO50819
0 years, female, NA, stage:2, alive, 510 days
17.7
DO45207
0 years, male, NA, stage:1, alive, 1050 days
17.6
DO23539
0 years, male, NA, stage:1, alive, 1110 days
17.6
DO45209
0 years, male, NA, stage:4, alive, 1350 days
17.3
DO23544
0 years, male, NA, stage:2, alive, 960 days
17.2
DO45193
0 years, female, NA, stage:4, dead, 120 days
17.2
DO50817
0 years, male, NA, stage:2, alive, 390 days
17.0
DO45191
0 years, female, NA, stage:2, alive, 1200 days
16.8
DO50814
0 years, male, NA, stage:3, alive, 420 days
16.4
DO23511
0 years, female, NA, stage:3, dead, 180 days
16.0
DO23536
0 years, male, NA, stage:2, alive, 930 days
15.9
DO45187
0 years, female, NA, stage:1, alive, 1260 days
15.9
DO48677
0 years, male, NA, stage:3, alive, 1140 days
15.6
DO45229
0 years, male, NA, stage:1, alive, 990 days
15.4
DO48693
0 years, male, NA, stage:2, alive, 900 days
15.3
DO45265
0 years, male, NA, stage:3, alive, 1020 days
15.2
DO50807
0 years, male, NA, stage:1, alive, 540 days
14.7
DO23528
0 years, female, NA, stage:2, alive, 1020 days
13.1
DO23548
0 years, female, NA, stage:1, alive, 840 days
12.8
DO50839
0 years, female, NA, stage:3, alive, 330 days
12.6
DO48733
0 years, male, NA, stage:2, alive, 600 days
12.3
DO50787
0 years, male, NA, stage:3, alive, 480 days
10.1
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
123
Tumor
1.4
463
Tumor
1.1
137
Tumor
1.1
113
Tumor
1.1
136
Normal
1.0
161
Tumor
1.0
125
Tumor
0.8
145
Tumor
0.8
171
Tumor
0.8
367
Tumor
0.8
141
Tumor
0.8
413
Tumor
0.8
257
Tumor
0.8
132
Normal
0.7
268
Normal
0.7
126
Normal
0.7
363
Tumor
0.7
231
Tumor
0.7
138
Normal
0.7
128
Normal
0.6
261
Tumor
0.6
114
Normal
0.6
647
Tumor
0.6
477
Tumor
0.6
431
Tumor
0.6
127
Tumor
0.5
627
Tumor
0.5
131
Tumor
0.5
271
Tumor
0.5
285
Tumor
0.5
571
Tumor
0.5
641
Tumor
0.5
421
Tumor
0.5
661
Tumor
0.5
388
Normal
0.5
283
Tumor
0.4
187
Tumor
0.4
663
Tumor
0.4
332
Normal
0.4
314
Normal
0.4
365
Tumor
0.4
423
Tumor
0.4
351
Tumor
0.4
665
Tumor
0.4
724
Normal
0.4
1025
Tumor
0.4
313
Tumor
0.4
278
Normal
0.4
443
Tumor
0.4
451
Tumor
0.4
814
Normal
0.4
311
Tumor
0.4
617
Tumor
0.4
427
Tumor
0.4
267
Tumor
0.4
455
Tumor
0.4
191
Tumor
0.4
272
Normal
0.3
188
Normal
0.3
185
Tumor
0.3
745
Tumor
0.3
258
Normal
0.3
461
Tumor
0.3
298
Normal
0.3
395
Tumor
0.3
635
Tumor
0.3
428
Normal
0.3
434
Normal
0.3
573
Tumor
0.3
297
Tumor
0.3
227
Tumor
0.3
124
Normal
0.3
452
Normal
0.3
672
Normal
0.3
135
Tumor
0.3
331
Tumor
0.3
262
Normal
0.3
213
Tumor
0.3
172
Normal
0.2
112
Tumor
0.2
111
Normal
0.2
426
Normal
0.2
195
Tumor
0.2
881
Tumor
0.2
223
Tumor
0.2
411
Tumor
0.2
186
Normal
0.2
983
Tumor
0.2
671
Tumor
0.2
435
Tumor
0.2
616
Normal
0.2
1021
Tumor
0.2
387
Tumor
0.2
425
Tumor
0.2
357
Tumor
0.2
221
Tumor
0.2
727
Tumor
0.2
741
Tumor
0.2
473
Tumor
0.2
218
Normal
0.2
911
Tumor
0.2
343
Tumor
0.2
714
Normal
0.2
352
Normal
0.2
965
Tumor
0.2
813
Tumor
0.2
467
Tumor
0.2
391
Tumor
0.2
785
Tumor
0.2
563
Tumor
0.1
981
Tumor
0.1
447
Tumor
0.1
356
Normal
0.1
142
Normal
0.1
147
Tumor
0.1
1015
Tumor
0.1
662
Normal
0.1
664
Normal
0.1
478
Normal
0.1
375
Tumor
0.1
192
Normal
0.1
468
Normal
0.1
366
Normal
0.1
361
Tumor
0.1
466
Normal
0.1
148
Normal
0.1
212
Normal
0.1
355
Tumor
0.1
394
Normal
0.1
558
Normal
0.1
214
Normal
0.1
464
Normal
0.1
528
Normal
0.1
445
Tumor
0.1
685
Tumor
0.1
162
Normal
0.1
396
Normal
0.1
515
Tumor
0.1
868
Normal
0.1
628
Normal
0.1
424
Normal
0.1
462
Normal
0.1
444
Normal
0.1
232
Normal
0.1
228
Normal
0.1
286
Normal
0.1
341
Tumor
0.1
312
Normal
0.1
217
Tumor
0.1
222
Normal
0.1
977
Tumor
0.1
967
Tumor
0.1
1027
Tumor
0.1
618
Normal
0.1
695
Tumor
0.1
284
Normal
0.0
146
Normal
0.0
385
Tumor
0.0
416
Normal
0.0
422
Normal
0.0
362
Normal
0.0
1026
Normal
0.0
482
Normal
0.0
722
Normal
0.0
817
Tumor
0.0
721
Tumor
0.0
277
Tumor
0.0
923
Tumor
0.0
615
Tumor
0.0
914
Normal
0.0
224
Normal
0.0
386
Normal
0.0
715
Tumor
0.0
414
Normal
0.0
1043
Tumor
0.0
743
Tumor
0.0
433
Tumor
0.0
353
Tumor
0.0
697
Tumor
0.0
446
Normal
0.0
465
Tumor
0.0
481
Tumor
0.0
327
Tumor
-0.1
412
Normal
-0.1
642
Normal
-0.1
545
Tumor
-0.1
648
Normal
-0.1
474
Normal
-0.1
865
Tumor
-0.1
1013
Tumor
-0.1
666
Normal
-0.1
1022
Normal
-0.1
957
Tumor
-0.1
1044
Normal
-0.1
1016
Normal
-0.1
755
Tumor
-0.1
777
Tumor
-0.1
636
Normal
-0.1
393
Tumor
-0.1
392
Normal
-0.1
358
Normal
-0.1
384
Normal
-0.1
513
Tumor
-0.1
913
Tumor
-0.1
737
Tumor
-0.1
472
Normal
-0.1
196
Normal
-0.2
723
Tumor
-0.2
514
Normal
-0.2
518
Normal
-0.2
883
Tumor
-0.2
1045
Tumor
-0.2
686
Normal
-0.2
1032
Normal
-0.2
1031
Tumor
-0.2
572
Normal
-0.2
713
Tumor
-0.2
376
Normal
-0.2
368
Normal
-0.2
696
Normal
-0.2
471
Tumor
-0.2
533
Tumor
-0.2
553
Tumor
-0.2
862
Normal
-0.2
383
Tumor
-0.2
564
Normal
-0.2
456
Normal
-0.2
527
Tumor
-0.2
567
Tumor
-0.2
978
Normal
-0.2
857
Tumor
-0.2
536
Normal
-0.2
415
Tumor
-0.2
526
Normal
-0.2
778
Normal
-0.2
815
Tumor
-0.2
1041
Tumor
-0.2
557
Tumor
-0.2
328
Normal
-0.2
746
Normal
-0.3
716
Normal
-0.3
742
Normal
-0.3
786
Normal
-0.3
873
Tumor
-0.3
364
Normal
-0.3
487
Tumor
-0.3
698
Normal
-0.3
864
Normal
-0.3
867
Tumor
-0.3
851
Tumor
-0.3
1014
Normal
-0.3
523
Tumor
-0.3
953
Tumor
-0.3
488
Normal
-0.4
211
Tumor
-0.4
863
Tumor
-0.4
432
Normal
-0.4
498
Normal
-0.4
1042
Normal
-0.4
537
Tumor
-0.4
568
Normal
-0.4
484
Normal
-0.4
925
Tumor
-0.4
984
Normal
-0.4
448
Normal
-0.4
517
Tumor
-0.4
354
Normal
-0.4
982
Normal
-0.4
535
Tumor
-0.4
943
Tumor
-0.4
964
Normal
-0.5
966
Normal
-0.5
921
Tumor
-0.5
951
Tumor
-0.5
861
Tumor
-0.5
968
Normal
-0.5
852
Normal
-0.5
516
Normal
-0.5
524
Normal
-0.5
344
Normal
-0.5
497
Tumor
-0.5
975
Tumor
-0.5
574
Normal
-0.5
436
Normal
-0.5
917
Tumor
-0.5
874
Normal
-0.5
492
Normal
-0.5
1046
Normal
-0.5
956
Normal
-0.5
483
Tumor
-0.5
744
Normal
-0.5
1028
Normal
-0.6
823
Tumor
-0.6
491
Tumor
-0.6
878
Normal
-0.6
952
Normal
-0.6
756
Normal
-0.6
866
Normal
-0.6
816
Normal
-0.6
963
Tumor
-0.6
884
Normal
-0.6
525
Tumor
-0.6
915
Tumor
-0.6
955
Tumor
-0.6
937
Tumor
-0.6
916
Normal
-0.7
554
Normal
-0.7
976
Normal
-0.7
912
Normal
-0.7
538
Normal
-0.7
858
Normal
-0.7
534
Normal
-0.7
494
Normal
-0.7
738
Normal
-0.8
342
Normal
-0.8
818
Normal
-0.8
938
Normal
-0.8
958
Normal
-0.8
877
Tumor
-0.8
944
Normal
-0.8
546
Normal
-0.9
922
Normal
-0.9
918
Normal
-0.9
924
Normal
-0.9
954
Normal
-0.9
926
Normal
-0.9
824
Normal
-1.0
882
Normal
-1.0
728
Normal
-1.1
493
Tumor
-1.4
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
