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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
BCL2L11 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
6.3
Number of samples
362
Samples
Sample
Description
TPM
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
74.9
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
37.0
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
33.1
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
32.5
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
29.4
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
27.4
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
26.6
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
26.0
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
24.1
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
20.3
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
20.2
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
18.8
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
18.5
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
16.4
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
16.3
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
15.8
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
15.8
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
15.5
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
15.2
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
14.5
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
14.5
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
14.4
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
14.1
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
13.7
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
13.5
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
13.4
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
13.3
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
13.3
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
13.2
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
13.1
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
13.0
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
13.0
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
12.9
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
12.7
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
12.4
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
12.3
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
12.1
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
12.0
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
12.0
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
11.9
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
11.8
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
11.7
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
11.6
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
11.5
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
11.3
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
11.1
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
11.0
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
10.8
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
10.7
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
10.7
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
10.7
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
10.7
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
10.6
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
10.3
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
10.3
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
10.3
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
10.3
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
10.0
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
9.9
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
9.9
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
9.8
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
9.8
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
9.8
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
9.7
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
9.6
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
9.5
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
9.5
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
9.2
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
9.1
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
9.0
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
9.0
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
8.9
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
8.9
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
8.8
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
8.7
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
8.6
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
8.6
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
8.4
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
8.3
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
8.2
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
8.2
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
8.2
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
8.1
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
8.1
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
8.0
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
8.0
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
8.0
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
8.0
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
7.9
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
7.8
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
7.8
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
7.7
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
7.6
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
7.6
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
7.6
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
7.4
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
7.3
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
7.3
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
7.2
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
7.2
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
7.2
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
7.1
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
7.1
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
7.1
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
7.1
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
7.0
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
7.0
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
7.0
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
6.9
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
6.9
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
6.8
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
6.8
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
6.8
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
6.8
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
6.7
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
6.5
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
6.5
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
6.5
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
6.5
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
6.5
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
6.4
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
6.4
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
6.4
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
6.3
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
6.2
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
6.1
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
6.1
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
6.1
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
6.0
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
6.0
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
6.0
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
6.0
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
5.9
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
5.9
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
5.9
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
5.8
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
5.7
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
5.7
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
5.7
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
5.6
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
5.6
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
5.6
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
5.6
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
5.5
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
5.5
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
5.5
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
5.5
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
5.4
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
5.4
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
5.4
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
5.4
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
5.4
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
5.4
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
5.3
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
5.3
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
5.2
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
5.2
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
5.1
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
5.1
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
5.1
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
5.1
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
5.1
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
5.1
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
5.0
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
5.0
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
5.0
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
5.0
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
5.0
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
5.0
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
5.0
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
4.9
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
4.9
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
4.9
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
4.9
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
4.9
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
4.9
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
4.9
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
4.9
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
4.9
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
4.8
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
4.7
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
4.7
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
4.7
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
4.6
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
4.6
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
4.6
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
4.5
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
4.5
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
4.5
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
4.5
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
4.5
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
4.5
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
4.5
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
4.5
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
4.5
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
4.4
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
4.4
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
4.4
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
4.4
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
4.4
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
4.4
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
4.4
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
4.3
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
4.3
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
4.3
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
4.3
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
4.2
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
4.2
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
4.2
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
4.2
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
4.2
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
4.1
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
4.1
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
4.1
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
4.1
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
4.1
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
4.1
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
4.0
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
4.0
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
4.0
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
4.0
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
4.0
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
4.0
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
3.9
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
3.9
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
3.9
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
3.9
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
3.9
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
3.9
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
3.9
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
3.8
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
3.7
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
3.7
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
3.7
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
3.7
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
3.7
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
3.7
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
3.6
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
3.6
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
3.6
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
3.6
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
3.6
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
3.6
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
3.6
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
3.5
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
3.5
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
3.5
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
3.4
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
3.4
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
3.4
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
3.3
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
3.3
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
3.3
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
3.3
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
3.3
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
3.3
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
3.3
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
3.2
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
3.2
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
3.2
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
3.2
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
3.2
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
3.2
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
3.1
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
3.1
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
3.0
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
3.0
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
3.0
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
2.9
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
2.9
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
2.9
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
2.9
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
2.9
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
2.8
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
2.8
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
2.8
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
2.8
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
2.8
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
2.7
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
2.7
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
2.7
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
2.6
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
2.6
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
2.6
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
2.6
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
2.6
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
2.6
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
2.5
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
2.5
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
2.5
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
2.5
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
2.5
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
2.5
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
2.4
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
2.4
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
2.4
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
2.4
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
2.4
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
2.4
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
2.4
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
2.4
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
2.3
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
2.3
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
2.2
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
2.2
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
2.2
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
2.2
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
2.2
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
2.2
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
2.1
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
2.1
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
2.1
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
2.1
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
2.1
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
2.1
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
2.1
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
2.1
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
2.1
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
2.1
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
2.0
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
2.0
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
2.0
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
1.9
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
1.9
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
1.8
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
1.8
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
1.8
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
1.7
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
1.7
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
1.7
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
1.6
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
1.6
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
1.6
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
1.6
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
1.5
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
1.5
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
1.5
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
1.5
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
1.5
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
1.5
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
1.5
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
1.4
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
1.4
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
1.4
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
1.3
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
1.2
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
1.1
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
1.1
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
1.1
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
1.1
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
1.0
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
1.0
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
1.0
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
0.9
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
0.8
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
0.8
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
0.8
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
0.7
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
0.7
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
0.6
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
0.5
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
BCL2L11 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
7.4
Number of samples
231
Samples
Sample
Description
TPM
DO45263
0 years, male, NA, stage:3, dead, 270 days
25.8
DO45253
0 years, male, NA, stage:2, alive, 870 days
25.4
DO45096
0 years, male, NA, stage:2, dead, 1290 days
23.2
DO50855
0 years, male, NA, stage:2, alive, 570 days
22.3
DO23524
0 years, female, NA, stage:2, alive, 1050 days
22.0
DO23530
0 years, male, NA, stage:4, dead, 180 days
20.2
DO45225
0 years, male, NA, stage:1, alive, 1050 days
20.0
DO45121
0 years, male, NA, stage:3, alive, 1530 days
19.8
DO45273
0 years, male, NA, stage:2, alive, 480 days
19.5
DO23516
0 years, male, NA, stage:3, dead, 20 days
18.5
DO50815
0 years, male, NA, stage:3, alive, 150 days
17.4
DO45091
0 years, male, NA, stage:2, dead, 1320 days
17.0
DO45189
0 years, female, NA, stage:2, alive, 1200 days
15.4
DO45207
0 years, male, NA, stage:1, alive, 1050 days
14.6
DO45289
0 years, female, NA, stage:3, alive, 360 days
14.5
DO45209
0 years, male, NA, stage:4, alive, 1350 days
14.2
DO23551
0 years, male, NA, stage:3, dead, 150 days
13.9
DO23509
0 years, male, NA, stage:3, dead, 780 days
13.9
DO45235
0 years, female, NA, stage:1, alive, 900 days
13.7
DO23513
0 years, male, NA, stage:3, alive, 1200 days
13.6
DO45283
0 years, male, NA, stage:3, alive, 510 days
12.9
DO23515
0 years, male, NA, stage:2, alive, 1230 days
12.6
DO48732
0 years, male, NA, stage:3, alive, 630 days
12.3
DO45141
0 years, male, NA, stage:2, alive, 1320 days
12.2
DO23552
0 years, female, NA, stage:1, alive, 810 days
12.0
DO50778
0 years, male, NA, stage:4, alive, 630 days
12.0
DO45231
0 years, male, NA, stage:2, alive, 930 days
12.0
DO45237
0 years, male, NA, stage:2, alive, 900 days
12.0
DO45187
0 years, female, NA, stage:1, alive, 1260 days
11.6
DO45193
0 years, female, NA, stage:4, dead, 120 days
11.6
DO50817
0 years, male, NA, stage:2, alive, 390 days
11.5
DO48746
0 years, male, NA, stage:3, alive, 570 days
11.4
DO45277
0 years, male, NA, stage:3, alive, 600 days
11.3
DO48736
0 years, female, NA, stage:1, alive, 600 days
11.2
DO45185
0 years, male, NA, stage:2, alive, 600 days
11.2
DO23526
0 years, male, NA, stage:3, alive, 1050 days
11.0
DO48717
0 years, male, NA, stage:4, dead, 180 days
11.0
DO45219
0 years, male, NA, stage:2, alive, 1080 days
10.9
DO45191
0 years, female, NA, stage:2, alive, 1200 days
10.7
DO23521
0 years, male, NA, stage:3, alive, 1110 days
10.6
DO48701
0 years, male, NA, stage:2, alive, 780 days
10.6
DO45139
0 years, male, NA, stage:3, alive, 1320 days
10.6
DO23543
0 years, male, NA, stage:2, alive, 1020 days
10.6
DO45245
0 years, female, NA, stage:2, dead, 240 days
10.6
DO45279
0 years, male, NA, stage:3, alive, 1290 days
10.4
DO45137
0 years, male, NA, stage:1, alive, 1320 days
10.3
DO45257
0 years, male, NA, stage:3, alive, 810 days
10.2
DO45249
0 years, male, NA, stage:1, alive, 630 days
10.1
DO23546
0 years, male, NA, stage:2, alive, 1050 days
10.0
DO45205
0 years, female, NA, stage:2, dead, 90 days
9.9
DO50800
0 years, male, NA, stage:2, alive, 510 days
9.9
DO50820
0 years, female, NA, stage:3, alive, 510 days
9.9
DO45115
0 years, male, NA, stage:2, alive, 840 days
9.9
DO45183
0 years, female, NA, stage:2, dead, 570 days
9.9
DO45265
0 years, male, NA, stage:3, alive, 1020 days
9.9
DO50799
0 years, female, NA, stage:2, alive, 540 days
9.9
DO45197
0 years, male, NA, stage:2, alive, 1170 days
9.8
DO45117
0 years, female, NA, stage:2, dead, 1110 days
9.7
DO45155
0 years, male, NA, stage:2, alive, 2160 days
9.6
DO48747
0 years, male, NA, stage:3, alive, 540 days
9.6
DO45251
0 years, female, NA, stage:2, alive, 900 days
9.6
DO45213
0 years, male, NA, stage:1, alive, 1200 days
9.5
DO45092
0 years, male, NA, stage:4, dead, 1200 days
9.5
DO48721
0 years, female, NA, stage:1, alive, 900 days
9.0
DO50774
0 years, female, NA, stage:2, alive, 720 days
9.0
DO45239
0 years, male, NA, stage:2, alive, 870 days
8.9
DO48720
0 years, female, NA, stage:2, alive, 570 days
8.9
DO45131
0 years, male, NA, stage:4, dead, 360 days
8.8
DO48728
0 years, female, NA, stage:2, alive, 150 days
8.7
DO48677
0 years, male, NA, stage:3, alive, 1140 days
8.7
DO23518
0 years, male, NA, stage:2, alive, 1320 days
8.7
DO48697
0 years, female, NA, stage:2, dead, 810 days
8.6
DO45165
0 years, male, NA, stage:2, alive, 690 days
8.5
DO45123
0 years, female, NA, stage:2, dead, 570 days
8.4
DO23549
0 years, male, NA, stage:3, alive, 990 days
8.4
DO45275
0 years, male, NA, stage:3, dead, 10 days
8.2
DO45301
0 years, male, NA, stage:2, dead, 1440 days
8.1
DO45261
0 years, male, NA, stage:3, alive, 990 days
8.1
DO48743
0 years, female, NA, stage:2, alive, 570 days
8.0
DO45247
0 years, female, NA, stage:2, alive, 210 days
8.0
DO45223
0 years, male, NA, stage:4, alive, 1020 days
8.0
DO45153
0 years, female, NA, stage:2, alive, 1380 days
8.0
DO23528
0 years, female, NA, stage:2, alive, 1020 days
7.9
DO23540
0 years, male, NA, stage:1, alive, 750 days
7.9
DO45287
0 years, male, NA, stage:1, alive, 390 days
7.8
DO45299
0 years, female, NA, stage:1, alive, 1440 days
7.8
DO227801
0 years, female, NA, stage:1, alive, 660 days
7.8
DO45113
0 years, male, NA, stage:3, alive, 1560 days
7.7
DO50793
0 years, male, NA, stage:4, alive, 540 days
7.6
DO50832
0 years, male, NA, stage:3, alive, 90 days
7.6
DO23535
0 years, male, NA, stage:1, alive, 960 days
7.5
DO50789
0 years, female, NA, stage:2, alive, 570 days
7.5
DO48723
0 years, male, NA, stage:1, alive, 600 days
7.4
DO45173
0 years, male, NA, stage:3, alive, 1170 days
7.4
DO50819
0 years, female, NA, stage:2, alive, 510 days
7.3
DO50787
0 years, male, NA, stage:3, alive, 480 days
7.2
DO48681
0 years, male, NA, stage:2, alive, 900 days
7.2
DO23541
0 years, male, NA, stage:2, alive, 930 days
7.2
DO50805
0 years, male, NA, stage:2, alive, 690 days
7.2
DO45203
0 years, female, NA, stage:2, alive, 1170 days
7.2
DO45103
0 years, male, NA, stage:3, alive, 450 days
7.2
DO48737
0 years, male, NA, stage:1, alive, 720 days
7.1
DO50857
0 years, male, NA, stage:2, alive, 210 days
7.1
DO23523
0 years, male, NA, stage:3, alive, 1080 days
7.0
DO48716
0 years, male, NA, stage:2, alive, 720 days
7.0
DO50809
0 years, male, NA, stage:3, dead, 720 days
7.0
DO48715
0 years, female, NA, stage:2, dead, 690 days
7.0
DO45127
0 years, male, NA, stage:3, dead, 420 days
7.0
DO45157
0 years, male, NA, stage:2, alive, 1980 days
6.9
DO23525
0 years, male, NA, stage:4, alive, 1050 days
6.9
DO48757
0 years, female, NA, stage:3, alive, 480 days
6.8
DO45243
0 years, female, NA, stage:3, alive, 930 days
6.7
DO50829
0 years, male, NA, stage:3, alive, 570 days
6.6
DO45259
0 years, male, NA, stage:3, alive, 330 days
6.6
DO23512
0 years, male, NA, stage:1, alive, 1260 days
6.6
DO45125
0 years, male, NA, stage:3, alive, 1680 days
6.6
DO23542
0 years, male, NA, stage:3, alive, 960 days
6.5
DO48672
0 years, male, NA, stage:2, alive, 450 days
6.5
DO50840
0 years, male, NA, stage:2, alive, 330 days
6.5
DO50806
0 years, male, NA, stage:4, alive, 540 days
6.4
DO45303
0 years, female, NA, stage:3, alive, 990 days
6.4
DO45159
0 years, male, NA, stage:3, alive, 1470 days
6.4
DO48700
0 years, female, NA, stage:2, alive, 810 days
6.4
DO48733
0 years, male, NA, stage:2, alive, 600 days
6.4
DO50845
0 years, male, NA, stage:3, alive, 210 days
6.3
DO45307
0 years, female, NA, stage:4, dead, 240 days
6.2
DO23545
0 years, male, NA, stage:2, dead, 570 days
6.2
DO50850
0 years, male, NA, stage:3, alive, 720 days
6.1
DO23548
0 years, female, NA, stage:1, alive, 840 days
6.1
DO45269
0 years, male, NA, stage:3, alive, 750 days
6.1
DO23519
0 years, male, NA, stage:3, alive, 630 days
6.0
DO48730
0 years, female, NA, stage:2, alive, 630 days
6.0
DO45267
0 years, male, NA, stage:3, dead, 570 days
6.0
DO50844
0 years, male, NA, stage:4, alive, 300 days
5.9
DO23534
0 years, male, NA, stage:2, alive, 840 days
5.9
DO23536
0 years, male, NA, stage:2, alive, 930 days
5.9
DO45305
0 years, male, NA, stage:4, alive, 300 days
5.8
DO50798
0 years, male, NA, stage:3, dead, 30 days
5.8
DO23537
0 years, male, NA, stage:2, dead, 900 days
5.7
DO45179
0 years, female, NA, stage:2, alive, 600 days
5.7
DO23508
0 years, female, NA, stage:2, alive, 390 days
5.7
DO45217
0 years, female, NA, stage:3, dead, 270 days
5.7
DO50803
0 years, female, NA, stage:1, alive, 540 days
5.6
DO45227
0 years, female, NA, stage:2, alive, 1020 days
5.6
DO45229
0 years, male, NA, stage:1, alive, 990 days
5.6
DO48712
0 years, male, NA, stage:2, alive, 810 days
5.6
DO23514
0 years, male, NA, stage:2, alive, 1290 days
5.6
DO45233
0 years, male, NA, stage:3, alive, 900 days
5.6
DO45281
0 years, male, NA, stage:4, alive, 750 days
5.6
DO50811
0 years, male, NA, stage:1, alive, 450 days
5.4
DO45297
0 years, female, NA, stage:4, dead, 1260 days
5.3
DO50791
0 years, female, NA, stage:1, dead, 480 days
5.3
DO50776
0 years, male, NA, stage:1, alive, 690 days
5.1
DO45094
0 years, male, NA, stage:3, alive, 1650 days
5.1
DO45099
0 years, male, NA, stage:3, alive, 1590 days
5.1
DO45143
0 years, male, NA, stage:3, alive, 1290 days
5.0
DO23533
0 years, male, NA, stage:2, alive, 900 days
4.8
DO45211
0 years, male, NA, stage:3, alive, 240 days
4.8
DO48725
0 years, male, NA, stage:1, alive, 780 days
4.7
DO23510
0 years, female, NA, stage:2, alive, 870 days
4.7
DO45105
0 years, male, NA, stage:1, alive, 1680 days
4.7
DO50859
0 years, male, NA, stage:2, alive, 180 days
4.7
DO45169
0 years, male, NA, stage:3, alive, 1350 days
4.6
DO45135
0 years, male, NA, stage:1, alive, 1410 days
4.6
DO48679
0 years, male, NA, stage:2, alive, 1200 days
4.6
DO50807
0 years, male, NA, stage:1, alive, 540 days
4.5
DO50802
0 years, male, NA, stage:2, alive, 930 days
4.5
DO45119
0 years, male, NA, stage:3, dead, 510 days
4.4
DO48742
0 years, male, NA, stage:2, alive, 600 days
4.3
DO45215
0 years, male, NA, stage:2, alive, 1170 days
4.3
DO45111
0 years, male, NA, stage:2, alive, 1590 days
4.2
DO45199
0 years, female, NA, stage:2, alive, 1350 days
4.2
DO45221
0 years, female, NA, stage:4, dead, 390 days
4.2
DO23531
0 years, female, NA, stage:3, alive, 900 days
4.2
DO23538
0 years, male, NA, stage:2, alive, 450 days
4.2
DO48761
0 years, male, NA, stage:2, alive, 870 days
4.1
DO45171
0 years, male, NA, stage:3, alive, 600 days
4.0
DO50814
0 years, male, NA, stage:3, alive, 420 days
4.0
DO45177
0 years, female, NA, stage:3, alive, 1260 days
4.0
DO48693
0 years, male, NA, stage:2, alive, 900 days
4.0
DO45133
0 years, male, NA, stage:3, dead, 660 days
3.9
DO23532
0 years, female, NA, stage:1, alive, 960 days
3.9
DO45181
0 years, female, NA, stage:2, alive, 1200 days
3.9
DO45161
0 years, male, NA, stage:2, dead, 540 days
3.9
DO23517
0 years, male, NA, stage:2, alive, 1200 days
3.8
DO50816
0 years, male, NA, stage:2, alive, 390 days
3.8
DO45095
0 years, male, NA, stage:2, alive, 1620 days
3.8
DO48706
0 years, male, NA, stage:2, alive, 870 days
3.7
DO23547
0 years, male, NA, stage:1, alive, 1020 days
3.7
DO45163
0 years, male, NA, stage:2, alive, 960 days
3.7
DO23527
0 years, male, NA, stage:1, alive, 1050 days
3.7
DO50825
0 years, male, NA, stage:2, alive, 390 days
3.6
DO45107
0 years, female, NA, stage:2, alive, 1710 days
3.6
DO48704
0 years, female, NA, stage:3, alive, 750 days
3.5
DO50804
0 years, male, NA, stage:2, alive, 720 days
3.5
DO50808
0 years, male, NA, stage:2, alive, 570 days
3.5
DO48719
0 years, male, NA, stage:2, alive, 690 days
3.4
DO48760
0 years, female, NA, stage:2, alive, 690 days
3.3
DO23539
0 years, male, NA, stage:1, alive, 1110 days
3.3
DO23511
0 years, female, NA, stage:3, dead, 180 days
3.3
DO50785
0 years, male, NA, stage:4, dead, 90 days
3.3
DO45201
0 years, male, NA, stage:1, alive, 900 days
3.2
DO45109
0 years, male, NA, stage:2, alive, 1590 days
3.2
DO23550
0 years, male, NA, stage:1, alive, 990 days
3.1
DO227643
0 years, male, NA, stage:2, alive, 1260 days
3.1
DO48751
0 years, male, NA, stage:2, dead, 480 days
3.0
DO48682
0 years, female, NA, stage:3, dead, 120 days
3.0
DO45255
0 years, male, NA, stage:3, alive, 720 days
2.9
DO45129
0 years, male, NA, stage:3, alive, 1470 days
2.9
DO48741
0 years, male, NA, stage:3, alive, 240 days
2.8
DO50822
0 years, male, NA, stage:2, alive, 510 days
2.8
DO45145
0 years, male, NA, stage:3, dead, 60 days
2.8
DO23544
0 years, male, NA, stage:2, alive, 960 days
2.6
DO45093
0 years, male, NA, stage:2, dead, 720 days
2.6
DO50818
0 years, male, NA, stage:2, alive, 510 days
2.6
DO50783
0 years, male, NA, stage:3, alive, 480 days
2.6
DO23529
0 years, male, NA, stage:4, alive, 930 days
2.5
DO45097
0 years, male, NA, stage:3, alive, 1620 days
2.4
DO45101
0 years, male, NA, stage:2, alive, 1680 days
2.2
DO45195
0 years, male, NA, stage:1, alive, 390 days
2.2
DO48695
0 years, male, NA, stage:2, alive, 720 days
2.2
DO50813
0 years, male, NA, stage:2, alive, 420 days
2.1
DO48759
0 years, male, NA, stage:3, alive, 720 days
2.1
DO45285
0 years, male, NA, stage:3, alive, 480 days
2.0
DO45175
0 years, male, NA, stage:2, alive, 1140 days
2.0
DO45149
0 years, female, NA, stage:2, alive, 1260 days
1.9
DO45167
0 years, male, NA, stage:2, dead, 1440 days
1.9
DO45241
0 years, male, NA, stage:1, alive, 1080 days
1.8
DO48674
0 years, male, NA, stage:2, alive, 1260 days
1.4
DO50839
0 years, female, NA, stage:3, alive, 330 days
1.1
DO48727
0 years, female, NA, stage:2, dead, 390 days
0.9
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
572
Normal
1.7
497
Tumor
1.4
491
Tumor
1.3
957
Tumor
1.3
357
Tumor
1.3
568
Normal
1.1
1013
Tumor
1.1
161
Tumor
1.1
857
Tumor
1.1
125
Tumor
1.1
558
Normal
0.9
393
Tumor
0.9
537
Tumor
0.9
953
Tumor
0.8
487
Tumor
0.7
298
Normal
0.7
533
Tumor
0.7
724
Normal
0.6
141
Tumor
0.6
113
Tumor
0.6
493
Tumor
0.6
313
Tumor
0.6
564
Normal
0.6
258
Normal
0.6
574
Normal
0.6
423
Tumor
0.6
553
Tumor
0.6
554
Normal
0.6
523
Tumor
0.5
615
Tumor
0.5
483
Tumor
0.5
411
Tumor
0.5
314
Normal
0.5
482
Normal
0.5
415
Tumor
0.5
981
Tumor
0.5
982
Normal
0.5
465
Tumor
0.5
147
Tumor
0.5
481
Tumor
0.5
131
Tumor
0.5
723
Tumor
0.5
171
Tumor
0.5
786
Normal
0.4
921
Tumor
0.4
943
Tumor
0.4
965
Tumor
0.4
937
Tumor
0.4
744
Normal
0.4
375
Tumor
0.4
462
Normal
0.4
427
Tumor
0.4
137
Tumor
0.4
425
Tumor
0.4
267
Tumor
0.4
142
Normal
0.4
728
Normal
0.4
272
Normal
0.4
416
Normal
0.4
145
Tumor
0.4
268
Normal
0.4
1014
Normal
0.3
515
Tumor
0.3
456
Normal
0.3
218
Normal
0.3
195
Tumor
0.3
963
Tumor
0.3
472
Normal
0.3
526
Normal
0.3
545
Tumor
0.3
778
Normal
0.3
138
Normal
0.3
343
Tumor
0.3
756
Normal
0.3
525
Tumor
0.3
518
Normal
0.3
361
Tumor
0.3
331
Tumor
0.3
262
Normal
0.3
984
Normal
0.3
823
Tumor
0.3
428
Normal
0.3
185
Tumor
0.3
365
Tumor
0.3
136
Normal
0.2
464
Normal
0.2
257
Tumor
0.2
135
Tumor
0.2
695
Tumor
0.2
232
Normal
0.2
271
Tumor
0.2
538
Normal
0.2
332
Normal
0.2
737
Tumor
0.2
1046
Normal
0.2
424
Normal
0.2
922
Normal
0.2
445
Tumor
0.2
127
Tumor
0.2
517
Tumor
0.2
191
Tumor
0.2
938
Normal
0.2
745
Tumor
0.1
914
Normal
0.1
222
Normal
0.1
627
Tumor
0.1
463
Tumor
0.1
882
Normal
0.1
952
Normal
0.1
356
Normal
0.1
396
Normal
0.1
455
Tumor
0.1
516
Normal
0.1
883
Tumor
0.1
221
Tumor
0.1
355
Tumor
0.1
231
Tumor
0.1
297
Tumor
0.1
196
Normal
0.1
434
Normal
0.1
186
Normal
0.1
738
Normal
0.1
983
Tumor
0.1
451
Tumor
0.1
431
Tumor
0.1
436
Normal
0.1
524
Normal
0.1
461
Tumor
0.1
217
Tumor
0.1
785
Tumor
0.1
277
Tumor
0.1
746
Normal
0.1
312
Normal
0.1
435
Tumor
0.0
376
Normal
0.0
873
Tumor
0.0
448
Normal
0.0
488
Normal
0.0
148
Normal
0.0
192
Normal
0.0
351
Tumor
0.0
392
Normal
0.0
187
Tumor
0.0
132
Normal
0.0
954
Normal
0.0
956
Normal
0.0
951
Tumor
0.0
394
Normal
0.0
755
Tumor
0.0
111
Normal
0.0
146
Normal
0.0
863
Tumor
0.0
1015
Tumor
0.0
368
Normal
0.0
563
Tumor
0.0
964
Normal
0.0
925
Tumor
0.0
433
Tumor
0.0
527
Tumor
0.0
513
Tumor
0.0
1016
Normal
0.0
412
Normal
-0.1
915
Tumor
-0.1
862
Normal
-0.1
213
Tumor
-0.1
162
Normal
-0.1
698
Normal
-0.1
364
Normal
-0.1
387
Tumor
-0.1
742
Normal
-0.1
426
Normal
-0.1
366
Normal
-0.1
546
Normal
-0.1
328
Normal
-0.1
466
Normal
-0.1
383
Tumor
-0.1
421
Tumor
-0.1
126
Normal
-0.1
741
Tumor
-0.1
385
Tumor
-0.1
474
Normal
-0.1
878
Normal
-0.1
484
Normal
-0.1
571
Tumor
-0.1
944
Normal
-0.1
536
Normal
-0.1
534
Normal
-0.1
123
Tumor
-0.1
467
Tumor
-0.1
1045
Tumor
-0.1
641
Tumor
-0.1
342
Normal
-0.1
446
Normal
-0.1
777
Tumor
-0.1
977
Tumor
-0.1
923
Tumor
-0.1
388
Normal
-0.1
112
Tumor
-0.1
877
Tumor
-0.1
422
Normal
-0.1
327
Tumor
-0.1
278
Normal
-0.2
114
Normal
-0.2
477
Tumor
-0.2
1043
Tumor
-0.2
917
Tumor
-0.2
714
Normal
-0.2
452
Normal
-0.2
391
Tumor
-0.2
414
Normal
-0.2
214
Normal
-0.2
261
Tumor
-0.2
884
Normal
-0.2
635
Tumor
-0.2
924
Normal
-0.2
386
Normal
-0.2
636
Normal
-0.2
975
Tumor
-0.2
881
Tumor
-0.2
447
Tumor
-0.2
966
Normal
-0.2
311
Tumor
-0.2
492
Normal
-0.2
858
Normal
-0.2
362
Normal
-0.2
968
Normal
-0.2
352
Normal
-0.2
341
Tumor
-0.2
124
Normal
-0.3
743
Tumor
-0.3
911
Tumor
-0.3
128
Normal
-0.3
172
Normal
-0.3
814
Normal
-0.3
344
Normal
-0.3
384
Normal
-0.3
413
Tumor
-0.3
696
Normal
-0.3
618
Normal
-0.3
444
Normal
-0.3
978
Normal
-0.3
716
Normal
-0.3
514
Normal
-0.3
188
Normal
-0.3
468
Normal
-0.3
395
Tumor
-0.3
721
Tumor
-0.3
473
Tumor
-0.3
913
Tumor
-0.3
912
Normal
-0.3
686
Normal
-0.3
685
Tumor
-0.4
958
Normal
-0.4
926
Normal
-0.4
817
Tumor
-0.4
867
Tumor
-0.4
478
Normal
-0.4
1044
Normal
-0.4
443
Tumor
-0.4
498
Normal
-0.4
916
Normal
-0.4
918
Normal
-0.5
528
Normal
-0.5
818
Normal
-0.5
432
Normal
-0.5
955
Tumor
-0.5
727
Tumor
-0.5
353
Tumor
-0.5
363
Tumor
-0.5
967
Tumor
-0.5
471
Tumor
-0.5
617
Tumor
-0.5
358
Normal
-0.5
868
Normal
-0.5
722
Normal
-0.5
494
Normal
-0.5
976
Normal
-0.6
824
Normal
-0.6
874
Normal
-0.6
816
Normal
-0.6
715
Tumor
-0.6
852
Normal
-0.6
813
Tumor
-0.6
713
Tumor
-0.6
697
Tumor
-0.6
557
Tumor
-0.6
861
Tumor
-0.6
851
Tumor
-0.6
642
Normal
-0.6
535
Tumor
-0.6
866
Normal
-0.7
367
Tumor
-0.7
815
Tumor
-0.7
573
Tumor
-0.7
354
Normal
-0.7
616
Normal
-0.7
864
Normal
-0.7
567
Tumor
-0.7
628
Normal
-0.8
865
Tumor
-1.1
1022
Normal
N/A
1021
Tumor
N/A
1032
Normal
N/A
1031
Tumor
N/A
283
Tumor
N/A
284
Normal
N/A
285
Tumor
N/A
286
Normal
N/A
1028
Normal
N/A
1027
Tumor
N/A
1026
Normal
N/A
1025
Tumor
N/A
1042
Normal
N/A
1041
Tumor
N/A
647
Tumor
N/A
648
Normal
N/A
661
Tumor
N/A
662
Normal
N/A
663
Tumor
N/A
664
Normal
N/A
665
Tumor
N/A
666
Normal
N/A
671
Tumor
N/A
672
Normal
N/A
211
Tumor
N/A
212
Normal
N/A
223
Tumor
N/A
224
Normal
N/A
227
Tumor
N/A
228
Normal
N/A
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
