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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
TXNDC11 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
15.5
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
50.9
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
47.3
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
42.7
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
42.6
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
41.9
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
41.1
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
40.9
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
38.3
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
37.8
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
37.5
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
35.1
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
34.9
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
34.9
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
34.6
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
33.7
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
33.6
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
33.4
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
32.6
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
32.4
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
32.2
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
32.1
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
31.6
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
31.6
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
31.5
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
31.5
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
31.4
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
31.3
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
31.0
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
30.7
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
30.6
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
30.5
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
30.2
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
29.8
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
29.7
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
29.6
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
29.2
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
29.2
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
29.0
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
28.8
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
28.5
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
28.5
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
28.3
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
28.3
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
28.2
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
28.1
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
28.0
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
27.9
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
27.6
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
27.3
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
27.2
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
26.7
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
26.5
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
26.4
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
26.4
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
26.4
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
26.2
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
25.8
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
25.7
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
25.7
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
25.5
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
25.3
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
25.1
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
25.0
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
25.0
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
25.0
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
24.8
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
24.6
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
24.4
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
24.2
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
24.2
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
23.8
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
23.7
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
23.7
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
23.6
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
23.6
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
23.6
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
23.5
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
23.5
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
23.4
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
23.2
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
22.8
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
22.8
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
22.8
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
22.7
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
22.5
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
22.3
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
22.0
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
21.9
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
21.9
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
21.9
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
21.7
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
21.6
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
21.6
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
21.5
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
21.5
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
21.5
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
21.5
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
21.4
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
21.4
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
21.4
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
21.2
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
21.2
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
21.1
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
21.1
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
20.8
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
20.7
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
20.6
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
20.5
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
20.5
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
20.4
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
20.3
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
20.3
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
20.2
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
20.2
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
20.0
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
19.9
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
19.7
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
19.5
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
19.4
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
19.4
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
19.4
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
19.3
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
19.3
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
19.1
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
19.0
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
18.7
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
18.7
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
18.6
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
18.6
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
18.4
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
18.2
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
17.6
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
17.6
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
17.5
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
17.4
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
17.4
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
17.4
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
17.3
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
17.2
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
17.1
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
17.1
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
17.0
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
16.9
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
16.9
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
16.9
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
16.7
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
16.7
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
16.7
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
16.5
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
16.5
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
16.5
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
16.3
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
16.1
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
16.1
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
16.0
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
16.0
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
15.9
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
15.8
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
15.6
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
15.5
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
15.4
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
15.4
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
15.4
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
15.3
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
15.3
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
15.2
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
15.1
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
15.1
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
14.9
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
14.8
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
14.8
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
14.8
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
14.7
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
14.6
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
14.6
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
14.5
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
14.3
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
14.2
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
14.0
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
14.0
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
13.9
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
13.8
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
13.7
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
13.7
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
13.6
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
13.6
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
13.6
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
13.3
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
13.1
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
13.1
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
13.1
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
13.0
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
13.0
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
12.9
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
12.9
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
12.9
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
12.8
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
12.8
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
12.8
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
12.7
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
12.7
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
12.6
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
12.6
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
12.5
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
12.4
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
12.4
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
12.4
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
12.3
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
12.3
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
12.1
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
12.1
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
12.1
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
12.0
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
12.0
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
12.0
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
11.8
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
11.8
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
11.8
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
11.6
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
11.6
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
11.6
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
11.5
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
11.5
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
11.5
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
11.4
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
11.4
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
11.3
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
11.3
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
11.2
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
11.2
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
11.1
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
11.1
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
11.1
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
11.0
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
10.9
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
10.9
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
10.9
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
10.9
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
10.7
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
10.7
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
10.6
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
10.5
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
10.5
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
10.4
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
10.4
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
10.2
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
10.1
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
10.1
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
10.0
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
9.9
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
9.6
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
9.4
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
9.3
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
9.2
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
9.2
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
9.2
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
9.2
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
9.2
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
9.1
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
9.1
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
9.0
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
9.0
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
9.0
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
8.9
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
8.9
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
8.8
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
8.8
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
8.6
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
8.6
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
8.6
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
8.5
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
8.5
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
8.4
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
8.3
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
8.3
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
8.2
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
8.0
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
8.0
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
7.7
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
7.7
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
7.6
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
7.5
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
7.4
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
7.3
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
7.1
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
7.1
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
6.9
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
6.7
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
6.6
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
6.6
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
6.6
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
6.5
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
6.5
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
6.3
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
6.2
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
6.1
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
6.0
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
6.0
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
5.9
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
5.7
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
5.7
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
5.7
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
5.7
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
5.6
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
5.5
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
5.5
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
5.4
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
5.3
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
5.1
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
5.1
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
5.0
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
4.8
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
4.8
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
4.8
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
4.7
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
4.6
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
4.5
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
4.5
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
4.3
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
4.1
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
4.1
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
3.9
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
3.9
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
3.9
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
3.5
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
3.5
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
3.4
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
3.2
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
3.2
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
3.2
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
3.1
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
2.9
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
2.8
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
2.7
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
2.5
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
2.5
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
2.5
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
2.4
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
1.9
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
1.9
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
1.7
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
1.5
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
1.4
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
1.4
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
1.2
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
0.9
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
0.8
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
0.7
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
0.7
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
0.7
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
0.7
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
0.6
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
0.6
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
0.5
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
0.4
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
0.4
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
0.3
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
0.2
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
0.2
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
0.2
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
0.2
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
TXNDC11 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
24.3
Number of samples
231
Samples
Sample
Description
TPM
DO23511
0 years, female, NA, stage:3, dead, 180 days
53.8
DO23540
0 years, male, NA, stage:1, alive, 750 days
49.9
DO48701
0 years, male, NA, stage:2, alive, 780 days
48.3
DO45263
0 years, male, NA, stage:3, dead, 270 days
47.4
DO45125
0 years, male, NA, stage:3, alive, 1680 days
46.8
DO48747
0 years, male, NA, stage:3, alive, 540 days
46.7
DO45197
0 years, male, NA, stage:2, alive, 1170 days
46.2
DO45107
0 years, female, NA, stage:2, alive, 1710 days
43.5
DO45185
0 years, male, NA, stage:2, alive, 600 days
42.2
DO50844
0 years, male, NA, stage:4, alive, 300 days
42.0
DO50845
0 years, male, NA, stage:3, alive, 210 days
42.0
DO23525
0 years, male, NA, stage:4, alive, 1050 days
40.8
DO50799
0 years, female, NA, stage:2, alive, 540 days
40.5
DO45267
0 years, male, NA, stage:3, dead, 570 days
40.5
DO23513
0 years, male, NA, stage:3, alive, 1200 days
39.6
DO48719
0 years, male, NA, stage:2, alive, 690 days
39.0
DO48695
0 years, male, NA, stage:2, alive, 720 days
39.0
DO23521
0 years, male, NA, stage:3, alive, 1110 days
38.7
DO45249
0 years, male, NA, stage:1, alive, 630 days
37.6
DO48728
0 years, female, NA, stage:2, alive, 150 days
36.9
DO23512
0 years, male, NA, stage:1, alive, 1260 days
36.5
DO45137
0 years, male, NA, stage:1, alive, 1320 days
36.2
DO23532
0 years, female, NA, stage:1, alive, 960 days
36.0
DO50804
0 years, male, NA, stage:2, alive, 720 days
35.2
DO50807
0 years, male, NA, stage:1, alive, 540 days
34.2
DO45287
0 years, male, NA, stage:1, alive, 390 days
34.1
DO23539
0 years, male, NA, stage:1, alive, 1110 days
33.8
DO50818
0 years, male, NA, stage:2, alive, 510 days
33.8
DO45229
0 years, male, NA, stage:1, alive, 990 days
33.7
DO45241
0 years, male, NA, stage:1, alive, 1080 days
33.5
DO23548
0 years, female, NA, stage:1, alive, 840 days
33.4
DO45217
0 years, female, NA, stage:3, dead, 270 days
33.3
DO48725
0 years, male, NA, stage:1, alive, 780 days
33.2
DO45179
0 years, female, NA, stage:2, alive, 600 days
33.2
DO45303
0 years, female, NA, stage:3, alive, 990 days
33.0
DO45101
0 years, male, NA, stage:2, alive, 1680 days
32.8
DO45193
0 years, female, NA, stage:4, dead, 120 days
32.5
DO48760
0 years, female, NA, stage:2, alive, 690 days
32.4
DO45127
0 years, male, NA, stage:3, dead, 420 days
32.1
DO50829
0 years, male, NA, stage:3, alive, 570 days
31.9
DO45207
0 years, male, NA, stage:1, alive, 1050 days
31.6
DO48733
0 years, male, NA, stage:2, alive, 600 days
31.2
DO45115
0 years, male, NA, stage:2, alive, 840 days
31.0
DO23530
0 years, male, NA, stage:4, dead, 180 days
30.8
DO45167
0 years, male, NA, stage:2, dead, 1440 days
30.8
DO23510
0 years, female, NA, stage:2, alive, 870 days
30.6
DO50783
0 years, male, NA, stage:3, alive, 480 days
30.5
DO45159
0 years, male, NA, stage:3, alive, 1470 days
30.4
DO23549
0 years, male, NA, stage:3, alive, 990 days
30.4
DO45221
0 years, female, NA, stage:4, dead, 390 days
30.2
DO23551
0 years, male, NA, stage:3, dead, 150 days
29.8
DO50840
0 years, male, NA, stage:2, alive, 330 days
29.8
DO45155
0 years, male, NA, stage:2, alive, 2160 days
29.7
DO50819
0 years, female, NA, stage:2, alive, 510 days
29.6
DO23514
0 years, male, NA, stage:2, alive, 1290 days
29.3
DO45233
0 years, male, NA, stage:3, alive, 900 days
29.2
DO48759
0 years, male, NA, stage:3, alive, 720 days
29.2
DO45209
0 years, male, NA, stage:4, alive, 1350 days
29.2
DO50776
0 years, male, NA, stage:1, alive, 690 days
29.1
DO45245
0 years, female, NA, stage:2, dead, 240 days
28.9
DO48682
0 years, female, NA, stage:3, dead, 120 days
28.6
DO48712
0 years, male, NA, stage:2, alive, 810 days
28.5
DO45096
0 years, male, NA, stage:2, dead, 1290 days
28.5
DO48723
0 years, male, NA, stage:1, alive, 600 days
28.5
DO45099
0 years, male, NA, stage:3, alive, 1590 days
28.4
DO23526
0 years, male, NA, stage:3, alive, 1050 days
28.4
DO50808
0 years, male, NA, stage:2, alive, 570 days
28.4
DO45205
0 years, female, NA, stage:2, dead, 90 days
28.4
DO50778
0 years, male, NA, stage:4, alive, 630 days
28.1
DO45153
0 years, female, NA, stage:2, alive, 1380 days
27.9
DO45225
0 years, male, NA, stage:1, alive, 1050 days
27.5
DO48746
0 years, male, NA, stage:3, alive, 570 days
27.4
DO45145
0 years, male, NA, stage:3, dead, 60 days
27.3
DO45255
0 years, male, NA, stage:3, alive, 720 days
27.2
DO45094
0 years, male, NA, stage:3, alive, 1650 days
27.0
DO50793
0 years, male, NA, stage:4, alive, 540 days
26.9
DO23547
0 years, male, NA, stage:1, alive, 1020 days
26.8
DO45281
0 years, male, NA, stage:4, alive, 750 days
26.7
DO50809
0 years, male, NA, stage:3, dead, 720 days
26.4
DO50798
0 years, male, NA, stage:3, dead, 30 days
26.4
DO50815
0 years, male, NA, stage:3, alive, 150 days
26.3
DO23535
0 years, male, NA, stage:1, alive, 960 days
26.2
DO48716
0 years, male, NA, stage:2, alive, 720 days
25.9
DO48743
0 years, female, NA, stage:2, alive, 570 days
25.9
DO227643
0 years, male, NA, stage:2, alive, 1260 days
25.9
DO23534
0 years, male, NA, stage:2, alive, 840 days
25.8
DO23518
0 years, male, NA, stage:2, alive, 1320 days
25.7
DO50803
0 years, female, NA, stage:1, alive, 540 days
25.6
DO45277
0 years, male, NA, stage:3, alive, 600 days
25.6
DO23527
0 years, male, NA, stage:1, alive, 1050 days
25.5
DO45111
0 years, male, NA, stage:2, alive, 1590 days
25.4
DO23523
0 years, male, NA, stage:3, alive, 1080 days
25.3
DO45177
0 years, female, NA, stage:3, alive, 1260 days
25.2
DO45243
0 years, female, NA, stage:3, alive, 930 days
25.2
DO48681
0 years, male, NA, stage:2, alive, 900 days
25.2
DO45305
0 years, male, NA, stage:4, alive, 300 days
25.1
DO45215
0 years, male, NA, stage:2, alive, 1170 days
25.1
DO50800
0 years, male, NA, stage:2, alive, 510 days
25.0
DO48742
0 years, male, NA, stage:2, alive, 600 days
25.0
DO50802
0 years, male, NA, stage:2, alive, 930 days
24.9
DO48674
0 years, male, NA, stage:2, alive, 1260 days
24.9
DO45117
0 years, female, NA, stage:2, dead, 1110 days
24.8
DO23541
0 years, male, NA, stage:2, alive, 930 days
24.7
DO45283
0 years, male, NA, stage:3, alive, 510 days
24.7
DO45181
0 years, female, NA, stage:2, alive, 1200 days
24.7
DO48732
0 years, male, NA, stage:3, alive, 630 days
24.2
DO45301
0 years, male, NA, stage:2, dead, 1440 days
24.1
DO227801
0 years, female, NA, stage:1, alive, 660 days
24.0
DO45219
0 years, male, NA, stage:2, alive, 1080 days
24.0
DO45299
0 years, female, NA, stage:1, alive, 1440 days
24.0
DO50850
0 years, male, NA, stage:3, alive, 720 days
23.8
DO45157
0 years, male, NA, stage:2, alive, 1980 days
23.8
DO45203
0 years, female, NA, stage:2, alive, 1170 days
23.7
DO48721
0 years, female, NA, stage:1, alive, 900 days
23.7
DO48737
0 years, male, NA, stage:1, alive, 720 days
23.7
DO23516
0 years, male, NA, stage:3, dead, 20 days
23.6
DO45131
0 years, male, NA, stage:4, dead, 360 days
23.5
DO50839
0 years, female, NA, stage:3, alive, 330 days
23.5
DO48693
0 years, male, NA, stage:2, alive, 900 days
23.4
DO48679
0 years, male, NA, stage:2, alive, 1200 days
23.4
DO48757
0 years, female, NA, stage:3, alive, 480 days
23.3
DO45235
0 years, female, NA, stage:1, alive, 900 days
23.0
DO45161
0 years, male, NA, stage:2, dead, 540 days
23.0
DO50787
0 years, male, NA, stage:3, alive, 480 days
22.9
DO48717
0 years, male, NA, stage:4, dead, 180 days
22.8
DO45253
0 years, male, NA, stage:2, alive, 870 days
22.7
DO45105
0 years, male, NA, stage:1, alive, 1680 days
22.6
DO45227
0 years, female, NA, stage:2, alive, 1020 days
22.6
DO45237
0 years, male, NA, stage:2, alive, 900 days
22.5
DO50813
0 years, male, NA, stage:2, alive, 420 days
22.2
DO45129
0 years, male, NA, stage:3, alive, 1470 days
22.1
DO48677
0 years, male, NA, stage:3, alive, 1140 days
22.0
DO23531
0 years, female, NA, stage:3, alive, 900 days
21.9
DO23550
0 years, male, NA, stage:1, alive, 990 days
21.8
DO45269
0 years, male, NA, stage:3, alive, 750 days
21.7
DO23533
0 years, male, NA, stage:2, alive, 900 days
21.7
DO23528
0 years, female, NA, stage:2, alive, 1020 days
21.6
DO45139
0 years, male, NA, stage:3, alive, 1320 days
21.6
DO48672
0 years, male, NA, stage:2, alive, 450 days
21.6
DO50816
0 years, male, NA, stage:2, alive, 390 days
21.5
DO45095
0 years, male, NA, stage:2, alive, 1620 days
21.4
DO48700
0 years, female, NA, stage:2, alive, 810 days
21.4
DO48715
0 years, female, NA, stage:2, dead, 690 days
21.4
DO23529
0 years, male, NA, stage:4, alive, 930 days
21.3
DO23542
0 years, male, NA, stage:3, alive, 960 days
21.2
DO50857
0 years, male, NA, stage:2, alive, 210 days
21.2
DO45259
0 years, male, NA, stage:3, alive, 330 days
21.2
DO45135
0 years, male, NA, stage:1, alive, 1410 days
21.1
DO50817
0 years, male, NA, stage:2, alive, 390 days
21.1
DO50825
0 years, male, NA, stage:2, alive, 390 days
21.0
DO45141
0 years, male, NA, stage:2, alive, 1320 days
20.8
DO48751
0 years, male, NA, stage:2, dead, 480 days
20.7
DO45279
0 years, male, NA, stage:3, alive, 1290 days
20.6
DO48697
0 years, female, NA, stage:2, dead, 810 days
20.5
DO50791
0 years, female, NA, stage:1, dead, 480 days
20.5
DO50811
0 years, male, NA, stage:1, alive, 450 days
20.3
DO45231
0 years, male, NA, stage:2, alive, 930 days
20.2
DO23546
0 years, male, NA, stage:2, alive, 1050 days
20.0
DO45297
0 years, female, NA, stage:4, dead, 1260 days
20.0
DO23508
0 years, female, NA, stage:2, alive, 390 days
19.9
DO45171
0 years, male, NA, stage:3, alive, 600 days
19.9
DO45103
0 years, male, NA, stage:3, alive, 450 days
19.9
DO45285
0 years, male, NA, stage:3, alive, 480 days
19.9
DO23552
0 years, female, NA, stage:1, alive, 810 days
19.9
DO45165
0 years, male, NA, stage:2, alive, 690 days
19.7
DO45211
0 years, male, NA, stage:3, alive, 240 days
19.7
DO23544
0 years, male, NA, stage:2, alive, 960 days
19.4
DO48727
0 years, female, NA, stage:2, dead, 390 days
19.4
DO45251
0 years, female, NA, stage:2, alive, 900 days
19.4
DO23517
0 years, male, NA, stage:2, alive, 1200 days
19.3
DO45273
0 years, male, NA, stage:2, alive, 480 days
19.2
DO45223
0 years, male, NA, stage:4, alive, 1020 days
18.8
DO48761
0 years, male, NA, stage:2, alive, 870 days
18.8
DO23515
0 years, male, NA, stage:2, alive, 1230 days
18.6
DO23536
0 years, male, NA, stage:2, alive, 930 days
18.4
DO45092
0 years, male, NA, stage:4, dead, 1200 days
18.3
DO23537
0 years, male, NA, stage:2, dead, 900 days
18.3
DO50805
0 years, male, NA, stage:2, alive, 690 days
18.1
DO45261
0 years, male, NA, stage:3, alive, 990 days
18.1
DO45199
0 years, female, NA, stage:2, alive, 1350 days
17.9
DO50814
0 years, male, NA, stage:3, alive, 420 days
17.8
DO45091
0 years, male, NA, stage:2, dead, 1320 days
17.7
DO23538
0 years, male, NA, stage:2, alive, 450 days
17.6
DO45143
0 years, male, NA, stage:3, alive, 1290 days
17.0
DO45109
0 years, male, NA, stage:2, alive, 1590 days
16.9
DO45133
0 years, male, NA, stage:3, dead, 660 days
16.8
DO45173
0 years, male, NA, stage:3, alive, 1170 days
16.8
DO23519
0 years, male, NA, stage:3, alive, 630 days
16.7
DO48704
0 years, female, NA, stage:3, alive, 750 days
16.7
DO45289
0 years, female, NA, stage:3, alive, 360 days
16.6
DO45097
0 years, male, NA, stage:3, alive, 1620 days
16.5
DO45163
0 years, male, NA, stage:2, alive, 960 days
16.5
DO23543
0 years, male, NA, stage:2, alive, 1020 days
16.5
DO45201
0 years, male, NA, stage:1, alive, 900 days
16.1
DO45195
0 years, male, NA, stage:1, alive, 390 days
16.1
DO50789
0 years, female, NA, stage:2, alive, 570 days
16.1
DO50822
0 years, male, NA, stage:2, alive, 510 days
15.5
DO50820
0 years, female, NA, stage:3, alive, 510 days
15.3
DO45113
0 years, male, NA, stage:3, alive, 1560 days
15.3
DO23524
0 years, female, NA, stage:2, alive, 1050 days
15.3
DO45187
0 years, female, NA, stage:1, alive, 1260 days
15.2
DO45183
0 years, female, NA, stage:2, dead, 570 days
15.1
DO45307
0 years, female, NA, stage:4, dead, 240 days
15.0
DO45121
0 years, male, NA, stage:3, alive, 1530 days
14.8
DO48720
0 years, female, NA, stage:2, alive, 570 days
14.8
DO45169
0 years, male, NA, stage:3, alive, 1350 days
14.8
DO50785
0 years, male, NA, stage:4, dead, 90 days
14.8
DO50832
0 years, male, NA, stage:3, alive, 90 days
14.5
DO45257
0 years, male, NA, stage:3, alive, 810 days
14.2
DO50806
0 years, male, NA, stage:4, alive, 540 days
13.5
DO45213
0 years, male, NA, stage:1, alive, 1200 days
13.3
DO50774
0 years, female, NA, stage:2, alive, 720 days
13.2
DO48736
0 years, female, NA, stage:1, alive, 600 days
13.1
DO48730
0 years, female, NA, stage:2, alive, 630 days
12.9
DO45175
0 years, male, NA, stage:2, alive, 1140 days
12.9
DO50855
0 years, male, NA, stage:2, alive, 570 days
12.7
DO45191
0 years, female, NA, stage:2, alive, 1200 days
12.7
DO45275
0 years, male, NA, stage:3, dead, 10 days
12.4
DO45149
0 years, female, NA, stage:2, alive, 1260 days
11.9
DO48706
0 years, male, NA, stage:2, alive, 870 days
11.8
DO45119
0 years, male, NA, stage:3, dead, 510 days
11.3
DO23545
0 years, male, NA, stage:2, dead, 570 days
11.2
DO45123
0 years, female, NA, stage:2, dead, 570 days
11.1
DO45239
0 years, male, NA, stage:2, alive, 870 days
10.6
DO48741
0 years, male, NA, stage:3, alive, 240 days
10.4
DO45247
0 years, female, NA, stage:2, alive, 210 days
10.2
DO50859
0 years, male, NA, stage:2, alive, 180 days
10.1
DO45265
0 years, male, NA, stage:3, alive, 1020 days
9.7
DO45093
0 years, male, NA, stage:2, dead, 720 days
9.5
DO23509
0 years, male, NA, stage:3, dead, 780 days
8.0
DO45189
0 years, female, NA, stage:2, alive, 1200 days
7.1
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
435
Tumor
1.0
937
Tumor
0.9
357
Tumor
0.8
1013
Tumor
0.7
777
Tumor
0.6
857
Tumor
0.6
695
Tumor
0.6
533
Tumor
0.5
387
Tumor
0.5
727
Tumor
0.5
938
Normal
0.5
723
Tumor
0.5
368
Normal
0.5
426
Normal
0.5
527
Tumor
0.5
636
Normal
0.5
696
Normal
0.5
663
Tumor
0.5
922
Normal
0.5
925
Tumor
0.4
912
Normal
0.4
572
Normal
0.4
697
Tumor
0.4
813
Tumor
0.4
1014
Normal
0.4
944
Normal
0.4
722
Normal
0.4
913
Tumor
0.4
568
Normal
0.4
866
Normal
0.4
286
Normal
0.4
963
Tumor
0.4
358
Normal
0.4
525
Tumor
0.4
477
Tumor
0.4
742
Normal
0.4
468
Normal
0.4
445
Tumor
0.3
926
Normal
0.3
878
Normal
0.3
923
Tumor
0.3
313
Tumor
0.3
956
Normal
0.3
314
Normal
0.3
376
Normal
0.3
332
Normal
0.3
112
Tumor
0.3
647
Tumor
0.3
412
Normal
0.3
642
Normal
0.3
392
Normal
0.3
571
Tumor
0.3
713
Tumor
0.3
1015
Tumor
0.3
414
Normal
0.3
952
Normal
0.3
615
Tumor
0.3
868
Normal
0.3
738
Normal
0.3
354
Normal
0.3
728
Normal
0.3
1022
Normal
0.3
862
Normal
0.3
514
Normal
0.3
955
Tumor
0.3
258
Normal
0.3
953
Tumor
0.3
232
Normal
0.3
714
Normal
0.3
227
Tumor
0.3
411
Tumor
0.3
616
Normal
0.3
1032
Normal
0.3
132
Normal
0.3
171
Tumor
0.3
918
Normal
0.3
978
Normal
0.3
448
Normal
0.3
356
Normal
0.3
984
Normal
0.3
456
Normal
0.3
298
Normal
0.3
148
Normal
0.3
186
Normal
0.2
526
Normal
0.2
518
Normal
0.2
564
Normal
0.2
231
Tumor
0.2
218
Normal
0.2
528
Normal
0.2
858
Normal
0.2
721
Tumor
0.2
864
Normal
0.2
1044
Normal
0.2
954
Normal
0.2
534
Normal
0.2
818
Normal
0.2
884
Normal
0.2
284
Normal
0.2
343
Tumor
0.2
672
Normal
0.2
554
Normal
0.2
428
Normal
0.2
852
Normal
0.2
342
Normal
0.2
778
Normal
0.2
724
Normal
0.2
914
Normal
0.2
1021
Tumor
0.2
427
Tumor
0.2
111
Normal
0.2
1046
Normal
0.2
964
Normal
0.2
648
Normal
0.2
488
Normal
0.2
228
Normal
0.2
464
Normal
0.2
452
Normal
0.2
364
Normal
0.2
618
Normal
0.2
924
Normal
0.2
513
Tumor
0.2
422
Normal
0.2
436
Normal
0.2
114
Normal
0.2
746
Normal
0.2
124
Normal
0.2
851
Tumor
0.2
882
Normal
0.2
327
Tumor
0.2
416
Normal
0.2
1028
Normal
0.2
1026
Normal
0.2
968
Normal
0.2
666
Normal
0.2
424
Normal
0.2
662
Normal
0.2
362
Normal
0.2
1016
Normal
0.2
466
Normal
0.2
546
Normal
0.2
138
Normal
0.2
262
Normal
0.1
1042
Normal
0.1
824
Normal
0.1
558
Normal
0.1
664
Normal
0.1
1027
Tumor
0.1
352
Normal
0.1
394
Normal
0.1
628
Normal
0.1
423
Tumor
0.1
786
Normal
0.1
982
Normal
0.1
353
Tumor
0.1
698
Normal
0.1
744
Normal
0.1
524
Normal
0.1
482
Normal
0.1
462
Normal
0.1
415
Tumor
0.1
487
Tumor
0.1
113
Tumor
0.1
472
Normal
0.1
467
Tumor
0.1
147
Tumor
0.1
196
Normal
0.1
966
Normal
0.1
951
Tumor
0.1
816
Normal
0.1
278
Normal
0.1
146
Normal
0.1
212
Normal
0.1
958
Normal
0.1
574
Normal
0.1
344
Normal
0.1
142
Normal
0.1
388
Normal
0.1
162
Normal
0.1
484
Normal
0.1
474
Normal
0.1
217
Tumor
0.1
384
Normal
0.1
817
Tumor
0.1
686
Normal
0.1
172
Normal
0.1
222
Normal
0.1
341
Tumor
0.1
268
Normal
0.1
214
Normal
0.1
873
Tumor
0.1
451
Tumor
0.1
432
Normal
0.0
916
Normal
0.0
328
Normal
0.0
497
Tumor
0.0
312
Normal
0.0
756
Normal
0.0
716
Normal
0.0
976
Normal
0.0
272
Normal
0.0
191
Tumor
0.0
874
Normal
0.0
481
Tumor
0.0
494
Normal
0.0
366
Normal
0.0
136
Normal
0.0
515
Tumor
0.0
433
Tumor
0.0
224
Normal
0.0
492
Normal
0.0
145
Tumor
0.0
915
Tumor
0.0
536
Normal
0.0
516
Normal
0.0
267
Tumor
0.0
523
Tumor
0.0
981
Tumor
0.0
396
Normal
0.0
351
Tumor
0.0
446
Normal
0.0
755
Tumor
0.0
365
Tumor
0.0
1045
Tumor
0.0
188
Normal
0.0
386
Normal
0.0
814
Normal
0.0
195
Tumor
0.0
943
Tumor
0.0
395
Tumor
0.0
277
Tumor
-0.1
977
Tumor
-0.1
192
Normal
-0.1
463
Tumor
-0.1
391
Tumor
-0.1
187
Tumor
-0.1
161
Tumor
-0.1
128
Normal
-0.1
223
Tumor
-0.1
921
Tumor
-0.1
557
Tumor
-0.1
741
Tumor
-0.1
538
Normal
-0.1
123
Tumor
-0.1
221
Tumor
-0.1
911
Tumor
-0.1
883
Tumor
-0.1
498
Normal
-0.1
863
Tumor
-0.1
126
Normal
-0.1
491
Tumor
-0.1
465
Tumor
-0.1
137
Tumor
-0.1
383
Tumor
-0.2
461
Tumor
-0.2
444
Normal
-0.2
745
Tumor
-0.2
967
Tumor
-0.2
563
Tumor
-0.2
434
Normal
-0.2
257
Tumor
-0.2
185
Tumor
-0.2
127
Tumor
-0.2
867
Tumor
-0.2
355
Tumor
-0.2
361
Tumor
-0.2
573
Tumor
-0.2
635
Tumor
-0.2
737
Tumor
-0.2
421
Tumor
-0.2
957
Tumor
-0.2
447
Tumor
-0.2
785
Tumor
-0.2
431
Tumor
-0.3
425
Tumor
-0.3
478
Normal
-0.3
413
Tumor
-0.3
537
Tumor
-0.3
517
Tumor
-0.3
545
Tumor
-0.3
627
Tumor
-0.3
917
Tumor
-0.3
393
Tumor
-0.3
493
Tumor
-0.3
975
Tumor
-0.3
141
Tumor
-0.3
1043
Tumor
-0.3
473
Tumor
-0.4
965
Tumor
-0.4
363
Tumor
-0.4
367
Tumor
-0.4
665
Tumor
-0.4
125
Tumor
-0.4
617
Tumor
-0.4
135
Tumor
-0.4
1031
Tumor
-0.4
375
Tumor
-0.4
823
Tumor
-0.5
213
Tumor
-0.5
567
Tumor
-0.5
483
Tumor
-0.5
671
Tumor
-0.5
865
Tumor
-0.5
455
Tumor
-0.5
285
Tumor
-0.5
641
Tumor
-0.5
385
Tumor
-0.5
877
Tumor
-0.5
443
Tumor
-0.5
283
Tumor
-0.5
815
Tumor
-0.5
535
Tumor
-0.5
271
Tumor
-0.5
861
Tumor
-0.6
261
Tumor
-0.6
297
Tumor
-0.6
131
Tumor
-0.6
743
Tumor
-0.6
331
Tumor
-0.6
311
Tumor
-0.6
1025
Tumor
-0.7
1041
Tumor
-0.7
661
Tumor
-0.7
685
Tumor
-0.7
211
Tumor
-0.7
983
Tumor
-0.7
471
Tumor
-0.8
881
Tumor
-0.8
715
Tumor
-0.9
553
Tumor
-0.9
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
