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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PLOD2 is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
25.4
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
237.7
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
121.5
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
100.7
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
98.6
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
89.9
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
84.9
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
84.9
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
84.0
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
81.4
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
79.7
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
72.5
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
67.6
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
66.8
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
66.5
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
65.5
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
65.2
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
63.4
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
63.2
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
63.0
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
62.0
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
61.1
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
60.9
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
60.8
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
60.2
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
58.1
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
57.7
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
57.3
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
56.3
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
56.3
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
55.5
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
54.9
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
54.8
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
53.4
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
53.0
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
53.0
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
53.0
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
52.6
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
52.6
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
51.6
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
50.8
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
50.7
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
50.1
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
49.7
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
49.1
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
49.0
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
47.8
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
46.6
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
46.6
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
46.3
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
45.9
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
45.4
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
45.3
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
45.0
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
45.0
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
44.8
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
44.6
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
44.5
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
44.2
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
44.0
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
43.4
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
43.2
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
43.0
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
42.6
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
42.5
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
42.3
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
41.9
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
41.7
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
41.0
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
40.8
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
40.4
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
40.3
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
39.9
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
39.7
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
38.0
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
37.8
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
37.8
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
37.5
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
37.4
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
37.1
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
37.1
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
36.8
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
36.6
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
36.5
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
36.2
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
36.0
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
35.9
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
35.8
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
35.5
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
35.3
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
35.1
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
35.0
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
34.0
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
33.9
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
33.8
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
33.2
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
33.2
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
32.7
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
32.5
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
32.5
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
31.7
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
31.7
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
31.5
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
31.3
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
31.2
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
30.6
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
30.2
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
30.0
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
29.2
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
28.3
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
27.8
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
27.5
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
27.4
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
27.4
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
27.2
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
27.1
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
26.8
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
26.6
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
26.5
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
26.5
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
26.4
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
26.3
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
26.1
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
26.0
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
25.7
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
25.2
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
25.2
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
25.1
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
24.8
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
24.6
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
24.6
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
24.4
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
24.4
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
24.3
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
24.3
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
24.1
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
24.1
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
23.9
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
23.8
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
23.8
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
23.7
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
23.3
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
23.2
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
23.0
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
23.0
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
22.9
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
22.8
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
22.8
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
22.7
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
22.6
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
22.6
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
22.5
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
22.4
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
22.4
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
22.3
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
22.3
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
22.2
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
22.2
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
22.0
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
22.0
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
21.7
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
21.6
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
21.6
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
21.3
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
21.2
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
21.1
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
20.8
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
20.8
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
20.8
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
20.8
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
20.6
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
20.5
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
20.5
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
20.4
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
20.3
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
20.3
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
20.1
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
20.1
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
19.3
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
19.2
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
19.1
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
18.9
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
18.9
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
18.7
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
18.7
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
18.6
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
18.6
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
18.4
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
18.4
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
18.2
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
18.2
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
18.2
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
18.0
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
17.9
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
17.8
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
17.7
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
17.6
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
17.6
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
17.4
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
17.2
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
17.1
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
17.1
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
17.1
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
17.0
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
16.9
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
16.7
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
16.7
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
16.6
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
16.6
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
16.5
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
16.5
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
16.3
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
16.2
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
15.9
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
15.8
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
15.7
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
15.6
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
15.5
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
15.4
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
15.4
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
15.4
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
15.3
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
15.3
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
15.3
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
15.2
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
15.2
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
15.1
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
15.0
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
14.9
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
14.8
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
14.8
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
14.7
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
14.6
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
14.6
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
14.6
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
14.6
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
14.5
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
14.5
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
14.5
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
14.4
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
14.2
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
14.2
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
14.1
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
14.0
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
13.9
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
13.7
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
13.7
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
13.4
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
13.4
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
13.2
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
13.2
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
13.0
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
13.0
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
13.0
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
13.0
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
12.8
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
12.7
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
12.7
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
12.6
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
12.6
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
12.6
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
12.5
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
12.3
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
12.3
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
12.2
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
12.1
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
12.0
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
11.9
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
11.9
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
11.7
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
11.7
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
11.6
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
11.5
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
11.4
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
11.4
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
11.2
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
11.2
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
11.2
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
11.2
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
11.1
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
11.0
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
11.0
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
10.8
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
10.8
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
10.6
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
10.6
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
10.4
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
10.2
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
10.2
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
10.1
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
10.0
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
10.0
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
9.9
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
9.8
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
9.7
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
9.6
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
9.5
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
9.3
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
9.2
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
9.1
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
9.1
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
9.0
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
8.9
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
8.8
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
8.7
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
8.4
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
8.2
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
8.1
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
8.1
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
8.0
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
7.5
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
7.5
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
7.5
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
7.4
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
7.3
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
7.3
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
7.2
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
7.1
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
7.1
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
7.0
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
7.0
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
7.0
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
7.0
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
6.9
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
6.9
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
6.8
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
6.6
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
6.5
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
6.5
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
6.4
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
6.4
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
6.4
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
6.3
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
6.3
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
6.2
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
6.2
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
5.9
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
5.4
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
5.3
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
5.2
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
5.2
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
5.1
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
5.1
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
5.0
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
4.8
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
4.5
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
4.2
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
3.7
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
3.6
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
3.6
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
3.2
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
3.0
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
2.9
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
2.9
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
2.8
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
2.8
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
2.7
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
2.6
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
2.5
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
2.4
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
2.1
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
1.2
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PLOD2 is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
28.1
Number of samples
231
Samples
Sample
Description
TPM
DO45119
0 years, male, NA, stage:3, dead, 510 days
131.5
DO45113
0 years, male, NA, stage:3, alive, 1560 days
119.1
DO50778
0 years, male, NA, stage:4, alive, 630 days
105.8
DO23524
0 years, female, NA, stage:2, alive, 1050 days
96.8
DO45239
0 years, male, NA, stage:2, alive, 870 days
92.8
DO45092
0 years, male, NA, stage:4, dead, 1200 days
91.8
DO50829
0 years, male, NA, stage:3, alive, 570 days
84.9
DO45209
0 years, male, NA, stage:4, alive, 1350 days
79.3
DO45167
0 years, male, NA, stage:2, dead, 1440 days
75.3
DO45307
0 years, female, NA, stage:4, dead, 240 days
74.1
DO45183
0 years, female, NA, stage:2, dead, 570 days
73.5
DO45219
0 years, male, NA, stage:2, alive, 1080 days
67.6
DO45093
0 years, male, NA, stage:2, dead, 720 days
66.3
DO23511
0 years, female, NA, stage:3, dead, 180 days
63.0
DO45231
0 years, male, NA, stage:2, alive, 930 days
61.2
DO45263
0 years, male, NA, stage:3, dead, 270 days
61.0
DO45223
0 years, male, NA, stage:4, alive, 1020 days
60.4
DO45213
0 years, male, NA, stage:1, alive, 1200 days
58.7
DO45145
0 years, male, NA, stage:3, dead, 60 days
56.1
DO45297
0 years, female, NA, stage:4, dead, 1260 days
54.1
DO50774
0 years, female, NA, stage:2, alive, 720 days
54.1
DO48672
0 years, male, NA, stage:2, alive, 450 days
53.2
DO45185
0 years, male, NA, stage:2, alive, 600 days
53.1
DO50850
0 years, male, NA, stage:3, alive, 720 days
52.4
DO23544
0 years, male, NA, stage:2, alive, 960 days
51.0
DO50806
0 years, male, NA, stage:4, alive, 540 days
50.7
DO45155
0 years, male, NA, stage:2, alive, 2160 days
50.6
DO45127
0 years, male, NA, stage:3, dead, 420 days
50.3
DO45259
0 years, male, NA, stage:3, alive, 330 days
50.1
DO23537
0 years, male, NA, stage:2, dead, 900 days
48.7
DO45269
0 years, male, NA, stage:3, alive, 750 days
47.8
DO50815
0 years, male, NA, stage:3, alive, 150 days
47.6
DO23551
0 years, male, NA, stage:3, dead, 150 days
46.6
DO23542
0 years, male, NA, stage:3, alive, 960 days
45.7
DO45131
0 years, male, NA, stage:4, dead, 360 days
45.3
DO45225
0 years, male, NA, stage:1, alive, 1050 days
44.3
DO45197
0 years, male, NA, stage:2, alive, 1170 days
44.2
DO45253
0 years, male, NA, stage:2, alive, 870 days
43.0
DO48712
0 years, male, NA, stage:2, alive, 810 days
42.6
DO23535
0 years, male, NA, stage:1, alive, 960 days
42.5
DO23519
0 years, male, NA, stage:3, alive, 630 days
42.5
DO45195
0 years, male, NA, stage:1, alive, 390 days
42.1
DO45217
0 years, female, NA, stage:3, dead, 270 days
41.8
DO45193
0 years, female, NA, stage:4, dead, 120 days
41.6
DO45267
0 years, male, NA, stage:3, dead, 570 days
40.7
DO45139
0 years, male, NA, stage:3, alive, 1320 days
40.6
DO45245
0 years, female, NA, stage:2, dead, 240 days
40.1
DO45203
0 years, female, NA, stage:2, alive, 1170 days
40.0
DO45281
0 years, male, NA, stage:4, alive, 750 days
39.5
DO45191
0 years, female, NA, stage:2, alive, 1200 days
39.4
DO50820
0 years, female, NA, stage:3, alive, 510 days
38.9
DO45301
0 years, male, NA, stage:2, dead, 1440 days
38.7
DO48697
0 years, female, NA, stage:2, dead, 810 days
38.4
DO48717
0 years, male, NA, stage:4, dead, 180 days
38.3
DO50800
0 years, male, NA, stage:2, alive, 510 days
38.2
DO48761
0 years, male, NA, stage:2, alive, 870 days
37.1
DO48720
0 years, female, NA, stage:2, alive, 570 days
37.0
DO45137
0 years, male, NA, stage:1, alive, 1320 days
36.9
DO48682
0 years, female, NA, stage:3, dead, 120 days
36.5
DO45205
0 years, female, NA, stage:2, dead, 90 days
36.5
DO23547
0 years, male, NA, stage:1, alive, 1020 days
36.0
DO48747
0 years, male, NA, stage:3, alive, 540 days
35.7
DO48681
0 years, male, NA, stage:2, alive, 900 days
35.4
DO45163
0 years, male, NA, stage:2, alive, 960 days
35.2
DO45207
0 years, male, NA, stage:1, alive, 1050 days
34.7
DO50799
0 years, female, NA, stage:2, alive, 540 days
34.6
DO48701
0 years, male, NA, stage:2, alive, 780 days
34.2
DO23548
0 years, female, NA, stage:1, alive, 840 days
33.8
DO48732
0 years, male, NA, stage:3, alive, 630 days
33.3
DO48730
0 years, female, NA, stage:2, alive, 630 days
32.9
DO45277
0 years, male, NA, stage:3, alive, 600 days
32.8
DO45129
0 years, male, NA, stage:3, alive, 1470 days
32.7
DO50798
0 years, male, NA, stage:3, dead, 30 days
32.3
DO48704
0 years, female, NA, stage:3, alive, 750 days
32.0
DO45165
0 years, male, NA, stage:2, alive, 690 days
31.8
DO48741
0 years, male, NA, stage:3, alive, 240 days
31.7
DO48743
0 years, female, NA, stage:2, alive, 570 days
31.5
DO45169
0 years, male, NA, stage:3, alive, 1350 days
31.1
DO227801
0 years, female, NA, stage:1, alive, 660 days
30.5
DO23539
0 years, male, NA, stage:1, alive, 1110 days
30.3
DO45275
0 years, male, NA, stage:3, dead, 10 days
30.2
DO50813
0 years, male, NA, stage:2, alive, 420 days
30.2
DO23526
0 years, male, NA, stage:3, alive, 1050 days
30.1
DO48728
0 years, female, NA, stage:2, alive, 150 days
29.6
DO45273
0 years, male, NA, stage:2, alive, 480 days
29.6
DO45161
0 years, male, NA, stage:2, dead, 540 days
29.3
DO23513
0 years, male, NA, stage:3, alive, 1200 days
29.3
DO48757
0 years, female, NA, stage:3, alive, 480 days
27.4
DO45265
0 years, male, NA, stage:3, alive, 1020 days
27.2
DO23510
0 years, female, NA, stage:2, alive, 870 days
27.1
DO23533
0 years, male, NA, stage:2, alive, 900 days
26.9
DO45187
0 years, female, NA, stage:1, alive, 1260 days
26.7
DO23516
0 years, male, NA, stage:3, dead, 20 days
26.2
DO48733
0 years, male, NA, stage:2, alive, 600 days
26.1
DO45179
0 years, female, NA, stage:2, alive, 600 days
25.8
DO23525
0 years, male, NA, stage:4, alive, 1050 days
25.3
DO45173
0 years, male, NA, stage:3, alive, 1170 days
25.2
DO23508
0 years, female, NA, stage:2, alive, 390 days
25.0
DO45235
0 years, female, NA, stage:1, alive, 900 days
24.9
DO45101
0 years, male, NA, stage:2, alive, 1680 days
24.9
DO50855
0 years, male, NA, stage:2, alive, 570 days
24.7
DO45279
0 years, male, NA, stage:3, alive, 1290 days
24.5
DO50832
0 years, male, NA, stage:3, alive, 90 days
24.1
DO45149
0 years, female, NA, stage:2, alive, 1260 days
23.7
DO45175
0 years, male, NA, stage:2, alive, 1140 days
23.5
DO45251
0 years, female, NA, stage:2, alive, 900 days
23.2
DO50808
0 years, male, NA, stage:2, alive, 570 days
23.1
DO45153
0 years, female, NA, stage:2, alive, 1380 days
23.1
DO45135
0 years, male, NA, stage:1, alive, 1410 days
23.1
DO45211
0 years, male, NA, stage:3, alive, 240 days
23.0
DO50805
0 years, male, NA, stage:2, alive, 690 days
22.9
DO23515
0 years, male, NA, stage:2, alive, 1230 days
22.9
DO45105
0 years, male, NA, stage:1, alive, 1680 days
22.7
DO50785
0 years, male, NA, stage:4, dead, 90 days
22.5
DO45103
0 years, male, NA, stage:3, alive, 450 days
22.4
DO45177
0 years, female, NA, stage:3, alive, 1260 days
22.0
DO50822
0 years, male, NA, stage:2, alive, 510 days
21.5
DO45283
0 years, male, NA, stage:3, alive, 510 days
21.2
DO50816
0 years, male, NA, stage:2, alive, 390 days
20.7
DO45305
0 years, male, NA, stage:4, alive, 300 days
20.6
DO45159
0 years, male, NA, stage:3, alive, 1470 days
20.6
DO23518
0 years, male, NA, stage:2, alive, 1320 days
20.6
DO45115
0 years, male, NA, stage:2, alive, 840 days
20.6
DO48725
0 years, male, NA, stage:1, alive, 780 days
20.5
DO23530
0 years, male, NA, stage:4, dead, 180 days
20.3
DO23541
0 years, male, NA, stage:2, alive, 930 days
20.3
DO23521
0 years, male, NA, stage:3, alive, 1110 days
20.2
DO45143
0 years, male, NA, stage:3, alive, 1290 days
20.0
DO23552
0 years, female, NA, stage:1, alive, 810 days
19.6
DO48706
0 years, male, NA, stage:2, alive, 870 days
19.5
DO45243
0 years, female, NA, stage:3, alive, 930 days
19.4
DO23546
0 years, male, NA, stage:2, alive, 1050 days
19.0
DO45247
0 years, female, NA, stage:2, alive, 210 days
18.9
DO48721
0 years, female, NA, stage:1, alive, 900 days
18.9
DO48716
0 years, male, NA, stage:2, alive, 720 days
18.8
DO23517
0 years, male, NA, stage:2, alive, 1200 days
18.7
DO48679
0 years, male, NA, stage:2, alive, 1200 days
18.6
DO45285
0 years, male, NA, stage:3, alive, 480 days
18.3
DO23545
0 years, male, NA, stage:2, dead, 570 days
18.3
DO45221
0 years, female, NA, stage:4, dead, 390 days
18.2
DO45121
0 years, male, NA, stage:3, alive, 1530 days
18.0
DO48723
0 years, male, NA, stage:1, alive, 600 days
17.9
DO23514
0 years, male, NA, stage:2, alive, 1290 days
17.7
DO45241
0 years, male, NA, stage:1, alive, 1080 days
17.4
DO45201
0 years, male, NA, stage:1, alive, 900 days
17.3
DO45157
0 years, male, NA, stage:2, alive, 1980 days
17.2
DO23549
0 years, male, NA, stage:3, alive, 990 days
17.1
DO50819
0 years, female, NA, stage:2, alive, 510 days
17.0
DO45141
0 years, male, NA, stage:2, alive, 1320 days
16.9
DO48700
0 years, female, NA, stage:2, alive, 810 days
16.8
DO45229
0 years, male, NA, stage:1, alive, 990 days
16.7
DO45255
0 years, male, NA, stage:3, alive, 720 days
16.6
DO48742
0 years, male, NA, stage:2, alive, 600 days
16.5
DO45261
0 years, male, NA, stage:3, alive, 990 days
16.5
DO45237
0 years, male, NA, stage:2, alive, 900 days
16.4
DO23531
0 years, female, NA, stage:3, alive, 900 days
16.3
DO45125
0 years, male, NA, stage:3, alive, 1680 days
16.2
DO23529
0 years, male, NA, stage:4, alive, 930 days
15.9
DO48751
0 years, male, NA, stage:2, dead, 480 days
15.9
DO48760
0 years, female, NA, stage:2, alive, 690 days
15.8
DO45107
0 years, female, NA, stage:2, alive, 1710 days
15.7
DO23540
0 years, male, NA, stage:1, alive, 750 days
15.6
DO45233
0 years, male, NA, stage:3, alive, 900 days
15.5
DO48737
0 years, male, NA, stage:1, alive, 720 days
15.4
DO45215
0 years, male, NA, stage:2, alive, 1170 days
15.4
DO23509
0 years, male, NA, stage:3, dead, 780 days
15.2
DO23528
0 years, female, NA, stage:2, alive, 1020 days
15.0
DO23512
0 years, male, NA, stage:1, alive, 1260 days
14.9
DO45257
0 years, male, NA, stage:3, alive, 810 days
14.8
DO23538
0 years, male, NA, stage:2, alive, 450 days
14.7
DO50789
0 years, female, NA, stage:2, alive, 570 days
14.7
DO45171
0 years, male, NA, stage:3, alive, 600 days
14.6
DO48746
0 years, male, NA, stage:3, alive, 570 days
14.6
DO48715
0 years, female, NA, stage:2, dead, 690 days
14.6
DO48736
0 years, female, NA, stage:1, alive, 600 days
14.3
DO23550
0 years, male, NA, stage:1, alive, 990 days
14.1
DO50859
0 years, male, NA, stage:2, alive, 180 days
14.1
DO50804
0 years, male, NA, stage:2, alive, 720 days
13.9
DO48677
0 years, male, NA, stage:3, alive, 1140 days
13.9
DO50787
0 years, male, NA, stage:3, alive, 480 days
13.9
DO50791
0 years, female, NA, stage:1, dead, 480 days
13.7
DO50793
0 years, male, NA, stage:4, alive, 540 days
13.6
DO45227
0 years, female, NA, stage:2, alive, 1020 days
13.5
DO45181
0 years, female, NA, stage:2, alive, 1200 days
13.5
DO50809
0 years, male, NA, stage:3, dead, 720 days
13.4
DO45111
0 years, male, NA, stage:2, alive, 1590 days
13.3
DO45199
0 years, female, NA, stage:2, alive, 1350 days
13.2
DO45096
0 years, male, NA, stage:2, dead, 1290 days
13.2
DO45117
0 years, female, NA, stage:2, dead, 1110 days
12.9
DO50844
0 years, male, NA, stage:4, alive, 300 days
12.9
DO45099
0 years, male, NA, stage:3, alive, 1590 days
12.9
DO45123
0 years, female, NA, stage:2, dead, 570 days
12.3
DO50803
0 years, female, NA, stage:1, alive, 540 days
12.1
DO45289
0 years, female, NA, stage:3, alive, 360 days
11.8
DO45249
0 years, male, NA, stage:1, alive, 630 days
11.8
DO48693
0 years, male, NA, stage:2, alive, 900 days
11.7
DO50807
0 years, male, NA, stage:1, alive, 540 days
11.6
DO45109
0 years, male, NA, stage:2, alive, 1590 days
11.4
DO50776
0 years, male, NA, stage:1, alive, 690 days
11.1
DO50802
0 years, male, NA, stage:2, alive, 930 days
11.0
DO227643
0 years, male, NA, stage:2, alive, 1260 days
10.8
DO23536
0 years, male, NA, stage:2, alive, 930 days
10.8
DO45133
0 years, male, NA, stage:3, dead, 660 days
10.6
DO48695
0 years, male, NA, stage:2, alive, 720 days
10.4
DO45189
0 years, female, NA, stage:2, alive, 1200 days
10.2
DO45094
0 years, male, NA, stage:3, alive, 1650 days
10.1
DO50845
0 years, male, NA, stage:3, alive, 210 days
10.1
DO23543
0 years, male, NA, stage:2, alive, 1020 days
9.5
DO50857
0 years, male, NA, stage:2, alive, 210 days
9.4
DO50840
0 years, male, NA, stage:2, alive, 330 days
9.3
DO48759
0 years, male, NA, stage:3, alive, 720 days
9.2
DO23527
0 years, male, NA, stage:1, alive, 1050 days
9.1
DO48674
0 years, male, NA, stage:2, alive, 1260 days
9.1
DO50811
0 years, male, NA, stage:1, alive, 450 days
8.7
DO45287
0 years, male, NA, stage:1, alive, 390 days
8.6
DO23534
0 years, male, NA, stage:2, alive, 840 days
8.2
DO48727
0 years, female, NA, stage:2, dead, 390 days
8.1
DO50783
0 years, male, NA, stage:3, alive, 480 days
8.0
DO50817
0 years, male, NA, stage:2, alive, 390 days
7.7
DO23532
0 years, female, NA, stage:1, alive, 960 days
7.7
DO45095
0 years, male, NA, stage:2, alive, 1620 days
7.6
DO50814
0 years, male, NA, stage:3, alive, 420 days
7.4
DO45091
0 years, male, NA, stage:2, dead, 1320 days
7.2
DO50818
0 years, male, NA, stage:2, alive, 510 days
7.1
DO50825
0 years, male, NA, stage:2, alive, 390 days
6.4
DO45303
0 years, female, NA, stage:3, alive, 990 days
4.5
DO45097
0 years, male, NA, stage:3, alive, 1620 days
4.4
DO50839
0 years, female, NA, stage:3, alive, 330 days
4.4
DO23523
0 years, male, NA, stage:3, alive, 1080 days
3.4
DO45299
0 years, female, NA, stage:1, alive, 1440 days
3.2
DO48719
0 years, male, NA, stage:2, alive, 690 days
2.3
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
877
Tumor
2.4
257
Tumor
1.8
663
Tumor
1.8
283
Tumor
1.8
387
Tumor
1.7
343
Tumor
1.7
573
Tumor
1.7
125
Tumor
1.6
983
Tumor
1.6
567
Tumor
1.6
685
Tumor
1.5
671
Tumor
1.3
367
Tumor
1.3
285
Tumor
1.3
375
Tumor
1.2
523
Tumor
1.1
965
Tumor
1.1
535
Tumor
1.1
813
Tumor
1.1
351
Tumor
1.0
743
Tumor
1.0
527
Tumor
0.9
951
Tumor
0.9
463
Tumor
0.9
331
Tumor
0.9
135
Tumor
0.9
537
Tumor
0.9
313
Tumor
0.9
817
Tumor
0.9
737
Tumor
0.9
455
Tumor
0.8
497
Tumor
0.8
953
Tumor
0.7
921
Tumor
0.7
641
Tumor
0.7
525
Tumor
0.7
297
Tumor
0.6
883
Tumor
0.6
311
Tumor
0.6
421
Tumor
0.6
473
Tumor
0.6
395
Tumor
0.5
221
Tumor
0.5
943
Tumor
0.5
385
Tumor
0.5
1021
Tumor
0.5
545
Tumor
0.5
963
Tumor
0.4
443
Tumor
0.4
391
Tumor
0.4
355
Tumor
0.4
427
Tumor
0.4
1013
Tumor
0.4
161
Tumor
0.4
433
Tumor
0.3
217
Tumor
0.3
923
Tumor
0.3
491
Tumor
0.3
814
Normal
0.3
223
Tumor
0.3
563
Tumor
0.3
137
Tumor
0.2
195
Tumor
0.2
131
Tumor
0.2
557
Tumor
0.2
487
Tumor
0.2
515
Tumor
0.2
617
Tumor
0.2
1015
Tumor
0.2
517
Tumor
0.1
393
Tumor
0.1
661
Tumor
0.1
471
Tumor
0.1
881
Tumor
0.1
865
Tumor
0.1
461
Tumor
0.1
873
Tumor
0.1
571
Tumor
0.1
447
Tumor
0.1
271
Tumor
0.1
145
Tumor
0.1
493
Tumor
0.1
536
Normal
0.1
863
Tumor
0.1
357
Tumor
0.0
425
Tumor
0.0
451
Tumor
0.0
1027
Tumor
0.0
695
Tumor
0.0
917
Tumor
0.0
857
Tumor
0.0
647
Tumor
0.0
465
Tumor
0.0
815
Tumor
0.0
981
Tumor
-0.1
227
Tumor
-0.1
277
Tumor
-0.1
715
Tumor
-0.1
383
Tumor
-0.1
533
Tumor
-0.1
713
Tumor
-0.1
1041
Tumor
-0.1
911
Tumor
-0.1
213
Tumor
-0.1
365
Tumor
-0.1
975
Tumor
-0.2
361
Tumor
-0.2
967
Tumor
-0.2
185
Tumor
-0.2
1031
Tumor
-0.2
697
Tumor
-0.2
462
Normal
-0.2
424
Normal
-0.2
727
Tumor
-0.3
665
Tumor
-0.3
444
Normal
-0.3
312
Normal
-0.3
413
Tumor
-0.3
428
Normal
-0.3
314
Normal
-0.3
342
Normal
-0.3
341
Tumor
-0.3
464
Normal
-0.3
423
Tumor
-0.3
851
Tumor
-0.3
524
Normal
-0.3
477
Tumor
-0.3
354
Normal
-0.3
127
Tumor
-0.3
1043
Tumor
-0.3
861
Tumor
-0.3
937
Tumor
-0.3
188
Normal
-0.3
414
Normal
-0.3
672
Normal
-0.3
435
Tumor
-0.3
982
Normal
-0.4
1025
Tumor
-0.4
513
Tumor
-0.4
913
Tumor
-0.4
416
Normal
-0.4
332
Normal
-0.4
141
Tumor
-0.4
431
Tumor
-0.4
411
Tumor
-0.4
147
Tumor
-0.4
123
Tumor
-0.4
136
Normal
-0.4
376
Normal
-0.4
868
Normal
-0.4
884
Normal
-0.4
777
Tumor
-0.4
1045
Tumor
-0.4
415
Tumor
-0.4
114
Normal
-0.4
231
Tumor
-0.4
358
Normal
-0.4
222
Normal
-0.4
422
Normal
-0.4
344
Normal
-0.4
214
Normal
-0.4
553
Tumor
-0.4
483
Tumor
-0.4
261
Tumor
-0.4
394
Normal
-0.4
615
Tumor
-0.4
666
Normal
-0.4
745
Tumor
-0.4
148
Normal
-0.4
538
Normal
-0.4
874
Normal
-0.4
284
Normal
-0.4
426
Normal
-0.4
278
Normal
-0.4
627
Tumor
-0.4
436
Normal
-0.4
492
Normal
-0.4
353
Tumor
-0.4
298
Normal
-0.4
456
Normal
-0.4
186
Normal
-0.5
786
Normal
-0.5
162
Normal
-0.5
187
Tumor
-0.5
392
Normal
-0.5
192
Normal
-0.5
171
Tumor
-0.5
915
Tumor
-0.5
574
Normal
-0.5
746
Normal
-0.5
113
Tumor
-0.5
648
Normal
-0.5
468
Normal
-0.5
352
Normal
-0.5
964
Normal
-0.5
984
Normal
-0.5
384
Normal
-0.5
364
Normal
-0.5
258
Normal
-0.5
466
Normal
-0.5
191
Tumor
-0.5
916
Normal
-0.5
446
Normal
-0.5
172
Normal
-0.5
785
Tumor
-0.5
132
Normal
-0.5
636
Normal
-0.5
388
Normal
-0.5
126
Normal
-0.5
386
Normal
-0.5
286
Normal
-0.5
558
Normal
-0.5
1016
Normal
-0.5
664
Normal
-0.5
482
Normal
-0.5
128
Normal
-0.5
1014
Normal
-0.5
724
Normal
-0.5
978
Normal
-0.5
396
Normal
-0.5
196
Normal
-0.5
467
Tumor
-0.5
368
Normal
-0.5
472
Normal
-0.5
124
Normal
-0.5
232
Normal
-0.5
755
Tumor
-0.5
452
Normal
-0.5
925
Tumor
-0.5
478
Normal
-0.5
738
Normal
-0.5
662
Normal
-0.6
362
Normal
-0.6
262
Normal
-0.6
952
Normal
-0.6
568
Normal
-0.6
224
Normal
-0.6
111
Normal
-0.6
445
Tumor
-0.6
211
Tumor
-0.6
228
Normal
-0.6
956
Normal
-0.6
432
Normal
-0.6
356
Normal
-0.6
528
Normal
-0.6
912
Normal
-0.6
366
Normal
-0.6
976
Normal
-0.6
616
Normal
-0.6
138
Normal
-0.6
914
Normal
-0.6
824
Normal
-0.6
742
Normal
-0.6
564
Normal
-0.6
628
Normal
-0.6
572
Normal
-0.6
534
Normal
-0.6
498
Normal
-0.6
267
Tumor
-0.6
212
Normal
-0.6
955
Tumor
-0.6
328
Normal
-0.6
484
Normal
-0.6
818
Normal
-0.6
514
Normal
-0.6
721
Tumor
-0.6
142
Normal
-0.6
146
Normal
-0.6
494
Normal
-0.6
474
Normal
-0.7
858
Normal
-0.7
977
Tumor
-0.7
882
Normal
-0.7
434
Normal
-0.7
944
Normal
-0.7
823
Tumor
-0.7
744
Normal
-0.7
1032
Normal
-0.7
878
Normal
-0.7
958
Normal
-0.7
778
Normal
-0.7
488
Normal
-0.7
816
Normal
-0.7
852
Normal
-0.7
412
Normal
-0.7
696
Normal
-0.7
268
Normal
-0.7
518
Normal
-0.7
686
Normal
-0.7
938
Normal
-0.7
966
Normal
-0.7
1042
Normal
-0.7
968
Normal
-0.7
714
Normal
-0.7
327
Tumor
-0.7
526
Normal
-0.7
954
Normal
-0.7
546
Normal
-0.7
1028
Normal
-0.7
1026
Normal
-0.7
618
Normal
-0.7
218
Normal
-0.7
922
Normal
-0.8
112
Tumor
-0.8
723
Tumor
-0.8
862
Normal
-0.8
1046
Normal
-0.8
866
Normal
-0.8
272
Normal
-0.8
1044
Normal
-0.8
864
Normal
-0.8
918
Normal
-0.8
741
Tumor
-0.8
728
Normal
-0.8
642
Normal
-0.8
1022
Normal
-0.8
957
Tumor
-0.8
448
Normal
-0.8
722
Normal
-0.8
926
Normal
-0.8
867
Tumor
-0.9
716
Normal
-0.9
756
Normal
-0.9
481
Tumor
-0.9
516
Normal
-0.9
698
Normal
-0.9
924
Normal
-1.0
363
Tumor
-1.0
635
Tumor
-1.0
554
Normal
-1.0
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
