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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
MED21 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
5.5
Number of samples
362
Samples
Sample
Description
TPM
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
25.9
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
17.9
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
17.7
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
17.7
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
17.3
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
17.0
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
14.9
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
14.9
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
14.2
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
14.1
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
13.8
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
13.5
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
12.7
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
12.7
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
12.4
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
12.2
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
12.2
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
12.0
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
11.3
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
11.2
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
10.9
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
10.8
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
10.8
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
10.8
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
10.5
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
10.5
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
10.3
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
10.3
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
10.1
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
9.8
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
9.7
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
9.6
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
9.6
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
9.4
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
9.4
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
9.3
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
9.3
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
9.3
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
9.3
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
9.2
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
9.1
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
9.1
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
9.1
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
9.0
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
8.9
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
8.9
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
8.8
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
8.7
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
8.7
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
8.7
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
8.6
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
8.6
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
8.6
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
8.5
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
8.5
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
8.5
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
8.3
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
8.3
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
8.3
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
8.2
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
8.2
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
8.2
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
8.1
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
8.1
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
8.0
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
8.0
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
8.0
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
7.9
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
7.9
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
7.7
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
7.7
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
7.7
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
7.7
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
7.6
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
7.6
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
7.6
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
7.6
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
7.6
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
7.5
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
7.5
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
7.5
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
7.5
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
7.5
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
7.4
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
7.4
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
7.4
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
7.4
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
7.3
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
7.2
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
7.1
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
7.1
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
7.0
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
7.0
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
7.0
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
7.0
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
7.0
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
6.9
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
6.9
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
6.9
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
6.9
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
6.9
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
6.8
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
6.8
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
6.8
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
6.8
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
6.8
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
6.7
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
6.7
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
6.7
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
6.6
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
6.6
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
6.6
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
6.5
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
6.5
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
6.5
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
6.4
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
6.4
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
6.4
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
6.4
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
6.4
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
6.3
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
6.3
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
6.2
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
6.2
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
6.2
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
6.2
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
6.2
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
6.2
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
6.1
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
6.1
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
6.1
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
6.0
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
6.0
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
6.0
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
6.0
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
6.0
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
6.0
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
5.9
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
5.9
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
5.9
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
5.9
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
5.9
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
5.9
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
5.9
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
5.8
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
5.7
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
5.6
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
5.6
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
5.5
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
5.5
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
5.5
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
5.5
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
5.5
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
5.4
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
5.4
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
5.4
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
5.3
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
5.3
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
5.2
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
5.2
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
5.2
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
5.2
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
5.2
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
5.2
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
5.1
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
5.1
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
5.1
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
5.0
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
5.0
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
5.0
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
5.0
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
4.9
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
4.9
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
4.9
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
4.9
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
4.8
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
4.8
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
4.8
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
4.8
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
4.8
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
4.8
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
4.8
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
4.8
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
4.8
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
4.7
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
4.7
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
4.7
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
4.7
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
4.6
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
4.6
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
4.6
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
4.6
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
4.6
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
4.6
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
4.5
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
4.5
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
4.5
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
4.5
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
4.5
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
4.5
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
4.4
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
4.4
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
4.4
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
4.4
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
4.4
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
4.3
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
4.3
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
4.2
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
4.2
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
4.2
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
4.2
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
4.2
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
4.1
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
4.1
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
4.1
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
4.1
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
4.1
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
4.0
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
4.0
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
4.0
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
4.0
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
4.0
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
4.0
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
4.0
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
4.0
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
4.0
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
4.0
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
3.9
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
3.9
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
3.9
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
3.9
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
3.9
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
3.9
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
3.9
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
3.9
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
3.8
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
3.8
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
3.8
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
3.8
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
3.8
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
3.8
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
3.8
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
3.8
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
3.7
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
3.7
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
3.7
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
3.7
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
3.7
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
3.7
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
3.7
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
3.7
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
3.6
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
3.6
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
3.6
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
3.6
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
3.6
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
3.5
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
3.5
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
3.5
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
3.5
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
3.5
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
3.5
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
3.5
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
3.4
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
3.4
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
3.4
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
3.3
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
3.3
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
3.3
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
3.3
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
3.3
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
3.3
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
3.2
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
3.2
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
3.2
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
3.2
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
3.2
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
3.2
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
3.2
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
3.2
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
3.2
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
3.1
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
3.1
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
3.1
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
3.1
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
3.1
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
3.1
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
3.0
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
3.0
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
3.0
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
3.0
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
3.0
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
3.0
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
3.0
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
2.9
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
2.9
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
2.9
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
2.9
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
2.9
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
2.9
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
2.9
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
2.9
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
2.9
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
2.9
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
2.8
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
2.8
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
2.8
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
2.8
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
2.8
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
2.8
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
2.7
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
2.7
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
2.7
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
2.6
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
2.6
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
2.6
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
2.5
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
2.5
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
2.4
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
2.4
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
2.4
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
2.4
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
2.4
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
2.4
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
2.3
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
2.3
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
2.3
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
2.3
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
2.2
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
2.2
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
2.2
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
2.2
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
2.2
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
2.2
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
2.1
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
2.1
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
2.1
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
2.0
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
1.9
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
1.9
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
1.9
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
1.9
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
1.9
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
1.9
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
1.7
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
1.7
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
1.7
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
1.6
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
1.6
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
1.5
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
1.4
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
1.4
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
1.4
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
1.3
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
1.3
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
1.2
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
1.2
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
1.0
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
0.9
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
0.7
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
0.5
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
MED21 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
7.8
Number of samples
231
Samples
Sample
Description
TPM
DO45245
0 years, female, NA, stage:2, dead, 240 days
49.9
DO45211
0 years, male, NA, stage:3, alive, 240 days
24.4
DO45299
0 years, female, NA, stage:1, alive, 1440 days
23.7
DO45185
0 years, male, NA, stage:2, alive, 600 days
23.6
DO23509
0 years, male, NA, stage:3, dead, 780 days
19.5
DO48746
0 years, male, NA, stage:3, alive, 570 days
17.2
DO45127
0 years, male, NA, stage:3, dead, 420 days
16.9
DO45237
0 years, male, NA, stage:2, alive, 900 days
16.8
DO45283
0 years, male, NA, stage:3, alive, 510 days
15.8
DO45279
0 years, male, NA, stage:3, alive, 1290 days
15.7
DO45277
0 years, male, NA, stage:3, alive, 600 days
15.4
DO45297
0 years, female, NA, stage:4, dead, 1260 days
14.6
DO45259
0 years, male, NA, stage:3, alive, 330 days
14.5
DO48672
0 years, male, NA, stage:2, alive, 450 days
14.4
DO23524
0 years, female, NA, stage:2, alive, 1050 days
14.2
DO45119
0 years, male, NA, stage:3, dead, 510 days
14.1
DO23552
0 years, female, NA, stage:1, alive, 810 days
13.4
DO23529
0 years, male, NA, stage:4, alive, 930 days
13.2
DO45189
0 years, female, NA, stage:2, alive, 1200 days
13.0
DO45307
0 years, female, NA, stage:4, dead, 240 days
13.0
DO45301
0 years, male, NA, stage:2, dead, 1440 days
13.0
DO23523
0 years, male, NA, stage:3, alive, 1080 days
12.9
DO48741
0 years, male, NA, stage:3, alive, 240 days
12.5
DO45253
0 years, male, NA, stage:2, alive, 870 days
12.4
DO45249
0 years, male, NA, stage:1, alive, 630 days
12.1
DO45111
0 years, male, NA, stage:2, alive, 1590 days
12.1
DO45135
0 years, male, NA, stage:1, alive, 1410 days
11.9
DO45207
0 years, male, NA, stage:1, alive, 1050 days
11.8
DO23514
0 years, male, NA, stage:2, alive, 1290 days
11.8
DO48717
0 years, male, NA, stage:4, dead, 180 days
11.6
DO45205
0 years, female, NA, stage:2, dead, 90 days
11.6
DO45261
0 years, male, NA, stage:3, alive, 990 days
11.6
DO45287
0 years, male, NA, stage:1, alive, 390 days
11.3
DO45225
0 years, male, NA, stage:1, alive, 1050 days
11.2
DO45227
0 years, female, NA, stage:2, alive, 1020 days
11.2
DO45157
0 years, male, NA, stage:2, alive, 1980 days
11.1
DO45131
0 years, male, NA, stage:4, dead, 360 days
11.1
DO23542
0 years, male, NA, stage:3, alive, 960 days
11.1
DO45305
0 years, male, NA, stage:4, alive, 300 days
11.0
DO50857
0 years, male, NA, stage:2, alive, 210 days
11.0
DO23530
0 years, male, NA, stage:4, dead, 180 days
10.9
DO45177
0 years, female, NA, stage:3, alive, 1260 days
10.9
DO45129
0 years, male, NA, stage:3, alive, 1470 days
10.9
DO23516
0 years, male, NA, stage:3, dead, 20 days
10.9
DO45139
0 years, male, NA, stage:3, alive, 1320 days
10.8
DO50774
0 years, female, NA, stage:2, alive, 720 days
10.8
DO45097
0 years, male, NA, stage:3, alive, 1620 days
10.7
DO45251
0 years, female, NA, stage:2, alive, 900 days
10.4
DO48720
0 years, female, NA, stage:2, alive, 570 days
10.4
DO45231
0 years, male, NA, stage:2, alive, 930 days
10.4
DO48681
0 years, male, NA, stage:2, alive, 900 days
10.2
DO45193
0 years, female, NA, stage:4, dead, 120 days
10.2
DO48732
0 years, male, NA, stage:3, alive, 630 days
10.2
DO48751
0 years, male, NA, stage:2, dead, 480 days
10.2
DO50855
0 years, male, NA, stage:2, alive, 570 days
9.9
DO23538
0 years, male, NA, stage:2, alive, 450 days
9.9
DO23521
0 years, male, NA, stage:3, alive, 1110 days
9.8
DO45175
0 years, male, NA, stage:2, alive, 1140 days
9.7
DO45303
0 years, female, NA, stage:3, alive, 990 days
9.6
DO23536
0 years, male, NA, stage:2, alive, 930 days
9.6
DO45163
0 years, male, NA, stage:2, alive, 960 days
9.5
DO45289
0 years, female, NA, stage:3, alive, 360 days
9.3
DO48719
0 years, male, NA, stage:2, alive, 690 days
9.3
DO45133
0 years, male, NA, stage:3, dead, 660 days
9.2
DO50859
0 years, male, NA, stage:2, alive, 180 days
9.1
DO45171
0 years, male, NA, stage:3, alive, 600 days
9.0
DO45233
0 years, male, NA, stage:3, alive, 900 days
8.9
DO45117
0 years, female, NA, stage:2, dead, 1110 days
8.9
DO23541
0 years, male, NA, stage:2, alive, 930 days
8.9
DO45235
0 years, female, NA, stage:1, alive, 900 days
8.9
DO23539
0 years, male, NA, stage:1, alive, 1110 days
8.7
DO45155
0 years, male, NA, stage:2, alive, 2160 days
8.6
DO50802
0 years, male, NA, stage:2, alive, 930 days
8.6
DO50789
0 years, female, NA, stage:2, alive, 570 days
8.6
DO45123
0 years, female, NA, stage:2, dead, 570 days
8.5
DO23533
0 years, male, NA, stage:2, alive, 900 days
8.5
DO45137
0 years, male, NA, stage:1, alive, 1320 days
8.5
DO23535
0 years, male, NA, stage:1, alive, 960 days
8.5
DO50787
0 years, male, NA, stage:3, alive, 480 days
8.4
DO45121
0 years, male, NA, stage:3, alive, 1530 days
8.4
DO48677
0 years, male, NA, stage:3, alive, 1140 days
8.4
DO45179
0 years, female, NA, stage:2, alive, 600 days
8.4
DO48757
0 years, female, NA, stage:3, alive, 480 days
8.3
DO45159
0 years, male, NA, stage:3, alive, 1470 days
8.1
DO48728
0 years, female, NA, stage:2, alive, 150 days
8.1
DO45263
0 years, male, NA, stage:3, dead, 270 days
8.1
DO45187
0 years, female, NA, stage:1, alive, 1260 days
8.0
DO48761
0 years, male, NA, stage:2, alive, 870 days
8.0
DO50800
0 years, male, NA, stage:2, alive, 510 days
8.0
DO45223
0 years, male, NA, stage:4, alive, 1020 days
7.9
DO45213
0 years, male, NA, stage:1, alive, 1200 days
7.9
DO50815
0 years, male, NA, stage:3, alive, 150 days
7.9
DO23549
0 years, male, NA, stage:3, alive, 990 days
7.8
DO45255
0 years, male, NA, stage:3, alive, 720 days
7.7
DO23537
0 years, male, NA, stage:2, dead, 900 days
7.6
DO48743
0 years, female, NA, stage:2, alive, 570 days
7.6
DO45096
0 years, male, NA, stage:2, dead, 1290 days
7.6
DO45239
0 years, male, NA, stage:2, alive, 870 days
7.6
DO48682
0 years, female, NA, stage:3, dead, 120 days
7.4
DO50822
0 years, male, NA, stage:2, alive, 510 days
7.4
DO50783
0 years, male, NA, stage:3, alive, 480 days
7.3
DO45199
0 years, female, NA, stage:2, alive, 1350 days
7.3
DO45103
0 years, male, NA, stage:3, alive, 450 days
7.3
DO50809
0 years, male, NA, stage:3, dead, 720 days
7.3
DO48697
0 years, female, NA, stage:2, dead, 810 days
7.2
DO23547
0 years, male, NA, stage:1, alive, 1020 days
7.2
DO45243
0 years, female, NA, stage:3, alive, 930 days
7.2
DO48723
0 years, male, NA, stage:1, alive, 600 days
7.1
DO50819
0 years, female, NA, stage:2, alive, 510 days
7.1
DO48730
0 years, female, NA, stage:2, alive, 630 days
7.1
DO48759
0 years, male, NA, stage:3, alive, 720 days
7.1
DO50820
0 years, female, NA, stage:3, alive, 510 days
6.9
DO45165
0 years, male, NA, stage:2, alive, 690 days
6.9
DO45099
0 years, male, NA, stage:3, alive, 1590 days
6.9
DO45247
0 years, female, NA, stage:2, alive, 210 days
6.8
DO45091
0 years, male, NA, stage:2, dead, 1320 days
6.8
DO45281
0 years, male, NA, stage:4, alive, 750 days
6.8
DO23527
0 years, male, NA, stage:1, alive, 1050 days
6.8
DO45153
0 years, female, NA, stage:2, alive, 1380 days
6.8
DO45141
0 years, male, NA, stage:2, alive, 1320 days
6.8
DO45183
0 years, female, NA, stage:2, dead, 570 days
6.8
DO48721
0 years, female, NA, stage:1, alive, 900 days
6.6
DO45219
0 years, male, NA, stage:2, alive, 1080 days
6.6
DO48736
0 years, female, NA, stage:1, alive, 600 days
6.6
DO48701
0 years, male, NA, stage:2, alive, 780 days
6.6
DO48704
0 years, female, NA, stage:3, alive, 750 days
6.6
DO45095
0 years, male, NA, stage:2, alive, 1620 days
6.5
DO50850
0 years, male, NA, stage:3, alive, 720 days
6.5
DO48737
0 years, male, NA, stage:1, alive, 720 days
6.5
DO23528
0 years, female, NA, stage:2, alive, 1020 days
6.4
DO50840
0 years, male, NA, stage:2, alive, 330 days
6.4
DO50776
0 years, male, NA, stage:1, alive, 690 days
6.4
DO50798
0 years, male, NA, stage:3, dead, 30 days
6.3
DO45285
0 years, male, NA, stage:3, alive, 480 days
6.3
DO50778
0 years, male, NA, stage:4, alive, 630 days
6.3
DO23545
0 years, male, NA, stage:2, dead, 570 days
6.3
DO45273
0 years, male, NA, stage:2, alive, 480 days
6.2
DO23515
0 years, male, NA, stage:2, alive, 1230 days
6.1
DO50803
0 years, female, NA, stage:1, alive, 540 days
6.1
DO23518
0 years, male, NA, stage:2, alive, 1320 days
6.1
DO45161
0 years, male, NA, stage:2, dead, 540 days
6.1
DO45169
0 years, male, NA, stage:3, alive, 1350 days
6.0
DO50813
0 years, male, NA, stage:2, alive, 420 days
6.0
DO23525
0 years, male, NA, stage:4, alive, 1050 days
6.0
DO45275
0 years, male, NA, stage:3, dead, 10 days
5.9
DO50791
0 years, female, NA, stage:1, dead, 480 days
5.9
DO50793
0 years, male, NA, stage:4, alive, 540 days
5.9
DO45181
0 years, female, NA, stage:2, alive, 1200 days
5.9
DO48712
0 years, male, NA, stage:2, alive, 810 days
5.9
DO23531
0 years, female, NA, stage:3, alive, 900 days
5.9
DO23510
0 years, female, NA, stage:2, alive, 870 days
5.8
DO50829
0 years, male, NA, stage:3, alive, 570 days
5.8
DO45093
0 years, male, NA, stage:2, dead, 720 days
5.8
DO23551
0 years, male, NA, stage:3, dead, 150 days
5.8
DO45145
0 years, male, NA, stage:3, dead, 60 days
5.7
DO45149
0 years, female, NA, stage:2, alive, 1260 days
5.7
DO50825
0 years, male, NA, stage:2, alive, 390 days
5.7
DO45257
0 years, male, NA, stage:3, alive, 810 days
5.7
DO23550
0 years, male, NA, stage:1, alive, 990 days
5.6
DO48733
0 years, male, NA, stage:2, alive, 600 days
5.5
DO45267
0 years, male, NA, stage:3, dead, 570 days
5.5
DO227643
0 years, male, NA, stage:2, alive, 1260 days
5.5
DO50804
0 years, male, NA, stage:2, alive, 720 days
5.4
DO48725
0 years, male, NA, stage:1, alive, 780 days
5.4
DO23519
0 years, male, NA, stage:3, alive, 630 days
5.4
DO45191
0 years, female, NA, stage:2, alive, 1200 days
5.4
DO23513
0 years, male, NA, stage:3, alive, 1200 days
5.3
DO48727
0 years, female, NA, stage:2, dead, 390 days
5.3
DO50785
0 years, male, NA, stage:4, dead, 90 days
5.3
DO50799
0 years, female, NA, stage:2, alive, 540 days
5.3
DO45203
0 years, female, NA, stage:2, alive, 1170 days
5.2
DO23543
0 years, male, NA, stage:2, alive, 1020 days
5.2
DO50805
0 years, male, NA, stage:2, alive, 690 days
5.2
DO45221
0 years, female, NA, stage:4, dead, 390 days
5.2
DO23526
0 years, male, NA, stage:3, alive, 1050 days
5.2
DO45201
0 years, male, NA, stage:1, alive, 900 days
5.2
DO23546
0 years, male, NA, stage:2, alive, 1050 days
5.1
DO48706
0 years, male, NA, stage:2, alive, 870 days
5.1
DO227801
0 years, female, NA, stage:1, alive, 660 days
5.1
DO45107
0 years, female, NA, stage:2, alive, 1710 days
5.0
DO50808
0 years, male, NA, stage:2, alive, 570 days
5.0
DO48760
0 years, female, NA, stage:2, alive, 690 days
5.0
DO48747
0 years, male, NA, stage:3, alive, 540 days
4.9
DO48695
0 years, male, NA, stage:2, alive, 720 days
4.9
DO50817
0 years, male, NA, stage:2, alive, 390 days
4.9
DO45115
0 years, male, NA, stage:2, alive, 840 days
4.9
DO45197
0 years, male, NA, stage:2, alive, 1170 days
4.8
DO23512
0 years, male, NA, stage:1, alive, 1260 days
4.8
DO48742
0 years, male, NA, stage:2, alive, 600 days
4.7
DO45143
0 years, male, NA, stage:3, alive, 1290 days
4.7
DO45265
0 years, male, NA, stage:3, alive, 1020 days
4.7
DO50844
0 years, male, NA, stage:4, alive, 300 days
4.6
DO48716
0 years, male, NA, stage:2, alive, 720 days
4.5
DO48700
0 years, female, NA, stage:2, alive, 810 days
4.5
DO45195
0 years, male, NA, stage:1, alive, 390 days
4.5
DO45092
0 years, male, NA, stage:4, dead, 1200 days
4.4
DO45094
0 years, male, NA, stage:3, alive, 1650 days
4.4
DO50806
0 years, male, NA, stage:4, alive, 540 days
4.4
DO50832
0 years, male, NA, stage:3, alive, 90 days
4.4
DO45229
0 years, male, NA, stage:1, alive, 990 days
4.3
DO45113
0 years, male, NA, stage:3, alive, 1560 days
4.2
DO23548
0 years, female, NA, stage:1, alive, 840 days
4.1
DO50816
0 years, male, NA, stage:2, alive, 390 days
4.1
DO23534
0 years, male, NA, stage:2, alive, 840 days
4.0
DO50811
0 years, male, NA, stage:1, alive, 450 days
4.0
DO45215
0 years, male, NA, stage:2, alive, 1170 days
4.0
DO48679
0 years, male, NA, stage:2, alive, 1200 days
4.0
DO50839
0 years, female, NA, stage:3, alive, 330 days
3.9
DO45173
0 years, male, NA, stage:3, alive, 1170 days
3.8
DO48715
0 years, female, NA, stage:2, dead, 690 days
3.8
DO45101
0 years, male, NA, stage:2, alive, 1680 days
3.7
DO45109
0 years, male, NA, stage:2, alive, 1590 days
3.7
DO45241
0 years, male, NA, stage:1, alive, 1080 days
3.5
DO45269
0 years, male, NA, stage:3, alive, 750 days
3.4
DO23540
0 years, male, NA, stage:1, alive, 750 days
3.4
DO45105
0 years, male, NA, stage:1, alive, 1680 days
3.3
DO23508
0 years, female, NA, stage:2, alive, 390 days
3.2
DO23517
0 years, male, NA, stage:2, alive, 1200 days
3.1
DO50818
0 years, male, NA, stage:2, alive, 510 days
2.9
DO50807
0 years, male, NA, stage:1, alive, 540 days
2.9
DO50845
0 years, male, NA, stage:3, alive, 210 days
2.9
DO48693
0 years, male, NA, stage:2, alive, 900 days
2.9
DO48674
0 years, male, NA, stage:2, alive, 1260 days
2.8
DO45209
0 years, male, NA, stage:4, alive, 1350 days
2.6
DO45167
0 years, male, NA, stage:2, dead, 1440 days
2.6
DO50814
0 years, male, NA, stage:3, alive, 420 days
2.5
DO23544
0 years, male, NA, stage:2, alive, 960 days
2.4
DO23511
0 years, female, NA, stage:3, dead, 180 days
2.4
DO45217
0 years, female, NA, stage:3, dead, 270 days
2.0
DO45125
0 years, male, NA, stage:3, alive, 1680 days
1.7
DO23532
0 years, female, NA, stage:1, alive, 960 days
1.3
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
386
Normal
1.1
396
Normal
1.0
388
Normal
1.0
394
Normal
1.0
865
Tumor
0.9
967
Tumor
0.8
482
Normal
0.8
385
Tumor
0.8
965
Tumor
0.8
285
Tumor
0.7
917
Tumor
0.7
715
Tumor
0.6
192
Normal
0.6
392
Normal
0.6
387
Tumor
0.6
355
Tumor
0.5
431
Tumor
0.5
741
Tumor
0.5
341
Tumor
0.5
211
Tumor
0.5
1021
Tumor
0.5
968
Normal
0.5
1045
Tumor
0.5
217
Tumor
0.5
283
Tumor
0.5
728
Normal
0.5
665
Tumor
0.5
957
Tumor
0.4
446
Normal
0.4
472
Normal
0.4
1022
Normal
0.4
222
Normal
0.4
964
Normal
0.4
661
Tumor
0.4
537
Tumor
0.4
743
Tumor
0.4
545
Tumor
0.4
1046
Normal
0.4
861
Tumor
0.4
868
Normal
0.4
724
Normal
0.4
533
Tumor
0.4
481
Tumor
0.4
647
Tumor
0.3
534
Normal
0.3
196
Normal
0.3
444
Normal
0.3
464
Normal
0.3
351
Tumor
0.3
462
Normal
0.3
214
Normal
0.3
863
Tumor
0.3
497
Tumor
0.3
1027
Tumor
0.3
685
Tumor
0.3
695
Tumor
0.3
433
Tumor
0.3
698
Normal
0.3
161
Tumor
0.3
1026
Normal
0.3
663
Tumor
0.3
1044
Normal
0.3
527
Tumor
0.3
395
Tumor
0.3
641
Tumor
0.3
218
Normal
0.3
411
Tumor
0.3
525
Tumor
0.3
277
Tumor
0.3
744
Normal
0.3
311
Tumor
0.2
923
Tumor
0.2
867
Tumor
0.2
284
Normal
0.2
445
Tumor
0.2
195
Tumor
0.2
447
Tumor
0.2
451
Tumor
0.2
487
Tumor
0.2
866
Normal
0.2
528
Normal
0.2
1031
Tumor
0.2
714
Normal
0.2
314
Normal
0.2
976
Normal
0.2
943
Tumor
0.2
123
Tumor
0.2
427
Tumor
0.2
432
Normal
0.2
727
Tumor
0.2
391
Tumor
0.2
468
Normal
0.2
955
Tumor
0.2
343
Tumor
0.2
874
Normal
0.2
553
Tumor
0.2
951
Tumor
0.2
357
Tumor
0.2
461
Tumor
0.2
224
Normal
0.2
223
Tumor
0.2
435
Tumor
0.2
918
Normal
0.2
666
Normal
0.2
331
Tumor
0.2
514
Normal
0.1
671
Tumor
0.1
742
Normal
0.1
523
Tumor
0.1
963
Tumor
0.1
127
Tumor
0.1
297
Tumor
0.1
455
Tumor
0.1
434
Normal
0.1
864
Normal
0.1
436
Normal
0.1
448
Normal
0.1
456
Normal
0.1
227
Tumor
0.1
467
Tumor
0.1
187
Tumor
0.1
191
Tumor
0.1
524
Normal
0.1
425
Tumor
0.1
493
Tumor
0.1
546
Normal
0.1
171
Tumor
0.1
212
Normal
0.1
975
Tumor
0.1
664
Normal
0.1
1013
Tumor
0.1
536
Normal
0.1
915
Tumor
0.1
415
Tumor
0.1
488
Normal
0.1
353
Tumor
0.1
873
Tumor
0.1
618
Normal
0.1
722
Normal
0.1
636
Normal
0.1
186
Normal
0.0
478
Normal
0.0
423
Tumor
0.0
862
Normal
0.0
535
Tumor
0.0
977
Tumor
0.0
393
Tumor
0.0
232
Normal
0.0
937
Tumor
0.0
1016
Normal
0.0
443
Tumor
0.0
286
Normal
0.0
672
Normal
0.0
188
Normal
0.0
364
Normal
0.0
738
Normal
0.0
416
Normal
0.0
662
Normal
0.0
352
Normal
0.0
298
Normal
0.0
723
Tumor
0.0
1043
Tumor
0.0
228
Normal
0.0
356
Normal
0.0
471
Tumor
0.0
148
Normal
0.0
465
Tumor
0.0
484
Normal
0.0
313
Tumor
0.0
332
Normal
0.0
213
Tumor
0.0
648
Normal
0.0
268
Normal
0.0
258
Normal
0.0
483
Tumor
0.0
185
Tumor
0.0
554
Normal
0.0
261
Tumor
-0.1
697
Tumor
-0.1
452
Normal
-0.1
926
Normal
-0.1
112
Tumor
-0.1
466
Normal
-0.1
517
Tumor
-0.1
567
Tumor
-0.1
221
Tumor
-0.1
278
Normal
-0.1
563
Tumor
-0.1
312
Normal
-0.1
716
Normal
-0.1
494
Normal
-0.1
147
Tumor
-0.1
262
Normal
-0.1
983
Tumor
-0.1
953
Tumor
-0.1
474
Normal
-0.1
363
Tumor
-0.1
515
Tumor
-0.1
538
Normal
-0.1
354
Normal
-0.1
526
Normal
-0.1
412
Normal
-0.1
572
Normal
-0.1
498
Normal
-0.1
696
Normal
-0.1
558
Normal
-0.1
713
Tumor
-0.1
966
Normal
-0.1
414
Normal
-0.1
573
Tumor
-0.1
982
Normal
-0.1
426
Normal
-0.1
721
Tumor
-0.1
1032
Normal
-0.1
571
Tumor
-0.1
818
Normal
-0.1
921
Tumor
-0.2
944
Normal
-0.2
413
Tumor
-0.2
686
Normal
-0.2
958
Normal
-0.2
271
Tumor
-0.2
272
Normal
-0.2
518
Normal
-0.2
938
Normal
-0.2
328
Normal
-0.2
463
Tumor
-0.2
916
Normal
-0.2
617
Tumor
-0.2
574
Normal
-0.2
642
Normal
-0.2
616
Normal
-0.2
327
Tumor
-0.2
737
Tumor
-0.2
1042
Normal
-0.2
984
Normal
-0.2
267
Tumor
-0.2
428
Normal
-0.2
162
Normal
-0.2
851
Tumor
-0.2
128
Normal
-0.2
342
Normal
-0.2
956
Normal
-0.2
492
Normal
-0.2
615
Tumor
-0.2
978
Normal
-0.2
858
Normal
-0.2
954
Normal
-0.2
557
Tumor
-0.3
1028
Normal
-0.3
815
Tumor
-0.3
564
Normal
-0.3
635
Tumor
-0.3
172
Normal
-0.3
568
Normal
-0.3
344
Normal
-0.3
358
Normal
-0.3
924
Normal
-0.3
113
Tumor
-0.3
491
Tumor
-0.3
473
Tumor
-0.3
257
Tumor
-0.3
516
Normal
-0.3
824
Normal
-0.3
952
Normal
-0.3
231
Tumor
-0.3
628
Normal
-0.3
922
Normal
-0.3
1014
Normal
-0.3
925
Tumor
-0.3
111
Normal
-0.4
125
Tumor
-0.4
1015
Tumor
-0.4
981
Tumor
-0.4
126
Normal
-0.4
477
Tumor
-0.4
424
Normal
-0.4
627
Tumor
-0.4
114
Normal
-0.5
421
Tumor
-0.5
422
Normal
-0.5
513
Tumor
-0.5
817
Tumor
-0.6
124
Normal
-0.6
816
Normal
-0.9
852
Normal
-0.9
823
Tumor
-1.1
857
Tumor
-1.1
1025
Tumor
-1.2
1041
Tumor
-1.6
911
Tumor
N/A
912
Normal
N/A
913
Tumor
N/A
914
Normal
N/A
361
Tumor
N/A
362
Normal
N/A
365
Tumor
N/A
366
Normal
N/A
367
Tumor
N/A
368
Normal
N/A
131
Tumor
N/A
132
Normal
N/A
375
Tumor
N/A
376
Normal
N/A
135
Tumor
N/A
136
Normal
N/A
137
Tumor
N/A
138
Normal
N/A
813
Tumor
N/A
814
Normal
N/A
141
Tumor
N/A
383
Tumor
N/A
142
Normal
N/A
384
Normal
N/A
145
Tumor
N/A
146
Normal
N/A
745
Tumor
N/A
746
Normal
N/A
755
Tumor
N/A
756
Normal
N/A
877
Tumor
N/A
878
Normal
N/A
881
Tumor
N/A
882
Normal
N/A
883
Tumor
N/A
884
Normal
N/A
777
Tumor
N/A
778
Normal
N/A
785
Tumor
N/A
786
Normal
N/A
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
