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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
UTRN is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
7.2
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
60.9
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
35.7
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
34.3
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
32.0
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
31.8
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
30.9
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
29.7
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
28.0
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
27.8
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
27.5
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
26.8
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
26.4
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
25.5
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
24.5
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
24.0
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
23.5
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
23.4
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
21.6
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
21.3
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
20.9
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
20.4
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
20.3
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
20.1
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
19.2
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
19.1
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
18.7
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
18.6
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
17.9
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
17.8
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
17.8
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
17.6
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
17.4
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
17.2
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
17.0
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
16.9
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
16.9
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
16.8
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
16.3
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
16.1
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
15.8
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
15.6
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
15.4
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
15.3
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
15.1
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
15.0
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
14.9
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
14.6
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
14.6
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
13.7
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
13.4
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
13.4
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
13.2
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
13.1
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
12.8
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
12.5
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
12.0
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
12.0
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
11.9
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
11.8
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
11.8
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
11.7
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
11.6
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
11.5
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
11.5
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
11.4
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
11.4
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
11.3
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
11.3
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
11.3
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
11.2
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
11.2
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
11.0
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
10.9
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
10.8
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
10.1
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
10.1
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
10.1
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
10.0
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
9.9
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
9.9
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
9.9
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
9.9
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
9.8
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
9.7
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
9.7
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
9.5
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
9.4
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
9.4
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
9.3
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
9.2
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
9.2
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
9.1
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
9.1
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
8.9
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
8.9
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
8.8
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
8.8
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
8.7
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
8.7
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
8.6
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
8.5
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
8.5
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
8.4
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
8.4
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
8.4
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
8.3
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
8.3
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
8.3
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
8.0
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
7.8
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
7.8
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
7.7
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
7.7
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
7.7
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
7.6
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
7.6
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
7.6
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
7.6
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
7.5
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
7.3
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
7.3
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
7.2
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
7.2
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
7.2
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
7.1
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
7.1
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
7.0
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
6.9
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
6.7
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
6.6
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
6.6
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
6.6
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
6.5
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
6.5
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
6.5
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
6.5
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
6.3
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
6.3
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
6.3
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
6.2
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
6.2
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
6.2
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
6.1
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
6.1
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
6.1
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
6.0
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
6.0
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
6.0
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
5.9
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
5.9
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
5.9
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
5.9
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
5.8
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
5.8
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
5.8
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
5.8
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
5.7
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
5.7
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
5.7
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
5.6
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
5.5
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
5.5
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
5.5
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
5.5
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
5.4
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
5.4
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
5.4
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
5.4
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
5.4
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
5.3
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
5.3
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
5.3
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
5.2
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
5.2
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
5.2
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
5.2
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
5.1
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
5.1
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
5.1
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
5.1
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
5.0
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
5.0
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
5.0
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
5.0
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
5.0
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
5.0
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
4.9
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
4.9
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
4.9
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
4.9
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
4.8
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
4.8
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
4.8
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
4.8
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
4.8
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
4.8
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
4.7
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
4.7
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
4.6
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
4.6
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
4.5
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
4.5
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
4.4
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
4.4
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
4.3
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
4.3
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
4.3
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
4.3
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
4.3
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
4.3
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
4.2
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
4.2
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
4.2
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
4.2
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
4.2
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
4.2
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
4.1
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
4.1
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
4.1
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
4.0
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
4.0
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
4.0
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
3.9
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
3.9
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
3.8
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
3.8
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
3.8
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
3.8
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
3.7
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
3.7
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
3.6
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
3.6
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
3.6
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
3.6
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
3.5
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
3.5
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
3.5
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
3.5
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
3.4
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
3.4
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
3.4
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
3.3
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
3.3
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
3.3
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
3.3
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
3.3
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
3.3
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
3.3
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
3.2
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
3.2
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
3.2
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
3.1
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
3.1
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
3.1
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
3.1
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
3.1
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
3.1
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
3.0
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
3.0
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
3.0
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
3.0
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
3.0
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
2.9
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
2.9
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
2.9
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
2.8
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
2.7
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
2.6
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
2.6
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
2.6
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
2.5
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
2.5
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
2.5
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
2.4
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
2.4
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
2.4
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
2.4
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
2.3
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
2.3
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
2.3
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
2.3
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
2.3
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
2.3
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
2.3
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
2.2
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
2.2
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
2.2
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
2.1
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
2.1
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
2.1
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
2.1
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
2.1
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
2.1
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
2.0
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
2.0
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
2.0
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
2.0
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
1.9
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
1.9
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
1.9
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
1.9
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
1.9
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
1.8
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
1.8
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
1.8
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
1.7
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
1.7
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
1.7
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
1.7
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
1.7
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
1.6
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
1.6
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
1.6
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
1.6
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
1.6
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
1.5
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
1.5
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
1.5
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
1.5
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
1.5
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
1.4
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
1.4
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
1.4
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
1.3
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
1.3
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
1.3
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
1.3
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
1.3
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
1.3
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
1.2
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
1.2
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
1.2
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
1.2
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
1.2
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
1.2
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
1.1
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
1.1
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
1.1
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
1.1
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
1.1
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
1.1
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
1.1
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
1.0
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
0.9
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
0.9
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
0.9
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
0.9
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
0.8
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
0.7
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
0.7
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
0.7
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
0.7
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
0.6
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
0.6
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
0.6
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
0.6
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
0.6
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
0.5
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
0.5
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
0.5
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
0.4
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
UTRN is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
6.3
Number of samples
231
Samples
Sample
Description
TPM
DO50844
0 years, male, NA, stage:4, alive, 300 days
29.4
DO45185
0 years, male, NA, stage:2, alive, 600 days
28.2
DO48681
0 years, male, NA, stage:2, alive, 900 days
25.4
DO45231
0 years, male, NA, stage:2, alive, 930 days
22.2
DO45189
0 years, female, NA, stage:2, alive, 1200 days
22.0
DO45259
0 years, male, NA, stage:3, alive, 330 days
19.2
DO48720
0 years, female, NA, stage:2, alive, 570 days
19.0
DO48728
0 years, female, NA, stage:2, alive, 150 days
18.5
DO45239
0 years, male, NA, stage:2, alive, 870 days
16.3
DO50815
0 years, male, NA, stage:3, alive, 150 days
15.7
DO45205
0 years, female, NA, stage:2, dead, 90 days
15.1
DO50820
0 years, female, NA, stage:3, alive, 510 days
15.1
DO45213
0 years, male, NA, stage:1, alive, 1200 days
14.0
DO45219
0 years, male, NA, stage:2, alive, 1080 days
13.7
DO45267
0 years, male, NA, stage:3, dead, 570 days
12.9
DO45157
0 years, male, NA, stage:2, alive, 1980 days
12.5
DO45139
0 years, male, NA, stage:3, alive, 1320 days
12.3
DO45145
0 years, male, NA, stage:3, dead, 60 days
12.2
DO45225
0 years, male, NA, stage:1, alive, 1050 days
11.7
DO50800
0 years, male, NA, stage:2, alive, 510 days
11.5
DO45203
0 years, female, NA, stage:2, alive, 1170 days
11.4
DO45237
0 years, male, NA, stage:2, alive, 900 days
11.4
DO23521
0 years, male, NA, stage:3, alive, 1110 days
11.1
DO45247
0 years, female, NA, stage:2, alive, 210 days
11.0
DO45279
0 years, male, NA, stage:3, alive, 1290 days
10.8
DO45183
0 years, female, NA, stage:2, dead, 570 days
10.7
DO45135
0 years, male, NA, stage:1, alive, 1410 days
10.6
DO45179
0 years, female, NA, stage:2, alive, 600 days
10.5
DO45165
0 years, male, NA, stage:2, alive, 690 days
10.4
DO23530
0 years, male, NA, stage:4, dead, 180 days
10.3
DO45173
0 years, male, NA, stage:3, alive, 1170 days
10.2
DO45187
0 years, female, NA, stage:1, alive, 1260 days
10.1
DO45273
0 years, male, NA, stage:2, alive, 480 days
10.1
DO48732
0 years, male, NA, stage:3, alive, 630 days
10.1
DO45159
0 years, male, NA, stage:3, alive, 1470 days
10.0
DO45277
0 years, male, NA, stage:3, alive, 600 days
9.8
DO45193
0 years, female, NA, stage:4, dead, 120 days
9.6
DO23514
0 years, male, NA, stage:2, alive, 1290 days
9.5
DO23523
0 years, male, NA, stage:3, alive, 1080 days
9.4
DO48706
0 years, male, NA, stage:2, alive, 870 days
9.3
DO45265
0 years, male, NA, stage:3, alive, 1020 days
9.1
DO45263
0 years, male, NA, stage:3, dead, 270 days
8.9
DO23536
0 years, male, NA, stage:2, alive, 930 days
8.9
DO45177
0 years, female, NA, stage:3, alive, 1260 days
8.8
DO23549
0 years, male, NA, stage:3, alive, 990 days
8.8
DO23535
0 years, male, NA, stage:1, alive, 960 days
8.7
DO45209
0 years, male, NA, stage:4, alive, 1350 days
8.5
DO45155
0 years, male, NA, stage:2, alive, 2160 days
8.5
DO45281
0 years, male, NA, stage:4, alive, 750 days
8.4
DO45223
0 years, male, NA, stage:4, alive, 1020 days
8.4
DO45127
0 years, male, NA, stage:3, dead, 420 days
8.4
DO45207
0 years, male, NA, stage:1, alive, 1050 days
8.4
DO50799
0 years, female, NA, stage:2, alive, 540 days
8.3
DO23547
0 years, male, NA, stage:1, alive, 1020 days
8.3
DO50787
0 years, male, NA, stage:3, alive, 480 days
8.3
DO48733
0 years, male, NA, stage:2, alive, 600 days
8.2
DO45131
0 years, male, NA, stage:4, dead, 360 days
8.2
DO45117
0 years, female, NA, stage:2, dead, 1110 days
8.1
DO50803
0 years, female, NA, stage:1, alive, 540 days
8.1
DO45251
0 years, female, NA, stage:2, alive, 900 days
8.1
DO45133
0 years, male, NA, stage:3, dead, 660 days
8.1
DO23518
0 years, male, NA, stage:2, alive, 1320 days
8.1
DO45191
0 years, female, NA, stage:2, alive, 1200 days
8.0
DO48712
0 years, male, NA, stage:2, alive, 810 days
7.9
DO23542
0 years, male, NA, stage:3, alive, 960 days
7.8
DO48730
0 years, female, NA, stage:2, alive, 630 days
7.8
DO45235
0 years, female, NA, stage:1, alive, 900 days
7.8
DO50857
0 years, male, NA, stage:2, alive, 210 days
7.7
DO23526
0 years, male, NA, stage:3, alive, 1050 days
7.7
DO48717
0 years, male, NA, stage:4, dead, 180 days
7.7
DO23524
0 years, female, NA, stage:2, alive, 1050 days
7.6
DO45141
0 years, male, NA, stage:2, alive, 1320 days
7.6
DO45103
0 years, male, NA, stage:3, alive, 450 days
7.6
DO50774
0 years, female, NA, stage:2, alive, 720 days
7.6
DO45275
0 years, male, NA, stage:3, dead, 10 days
7.5
DO45121
0 years, male, NA, stage:3, alive, 1530 days
7.4
DO45111
0 years, male, NA, stage:2, alive, 1590 days
7.3
DO45233
0 years, male, NA, stage:3, alive, 900 days
7.3
DO45249
0 years, male, NA, stage:1, alive, 630 days
7.1
DO45283
0 years, male, NA, stage:3, alive, 510 days
7.1
DO50778
0 years, male, NA, stage:4, alive, 630 days
7.1
DO45217
0 years, female, NA, stage:3, dead, 270 days
7.0
DO45227
0 years, female, NA, stage:2, alive, 1020 days
7.0
DO45137
0 years, male, NA, stage:1, alive, 1320 days
6.9
DO23509
0 years, male, NA, stage:3, dead, 780 days
6.9
DO23527
0 years, male, NA, stage:1, alive, 1050 days
6.8
DO45221
0 years, female, NA, stage:4, dead, 390 days
6.7
DO50819
0 years, female, NA, stage:2, alive, 510 days
6.6
DO48737
0 years, male, NA, stage:1, alive, 720 days
6.6
DO23510
0 years, female, NA, stage:2, alive, 870 days
6.5
DO48700
0 years, female, NA, stage:2, alive, 810 days
6.5
DO45197
0 years, male, NA, stage:2, alive, 1170 days
6.4
DO45163
0 years, male, NA, stage:2, alive, 960 days
6.4
DO50850
0 years, male, NA, stage:3, alive, 720 days
6.3
DO48761
0 years, male, NA, stage:2, alive, 870 days
6.3
DO45153
0 years, female, NA, stage:2, alive, 1380 days
6.3
DO45303
0 years, female, NA, stage:3, alive, 990 days
6.2
DO45287
0 years, male, NA, stage:1, alive, 390 days
6.1
DO23529
0 years, male, NA, stage:4, alive, 930 days
6.0
DO48695
0 years, male, NA, stage:2, alive, 720 days
5.8
DO48743
0 years, female, NA, stage:2, alive, 570 days
5.7
DO48697
0 years, female, NA, stage:2, dead, 810 days
5.7
DO23537
0 years, male, NA, stage:2, dead, 900 days
5.6
DO45171
0 years, male, NA, stage:3, alive, 600 days
5.6
DO45289
0 years, female, NA, stage:3, alive, 360 days
5.6
DO48736
0 years, female, NA, stage:1, alive, 600 days
5.5
DO45125
0 years, male, NA, stage:3, alive, 1680 days
5.5
DO50798
0 years, male, NA, stage:3, dead, 30 days
5.5
DO45269
0 years, male, NA, stage:3, alive, 750 days
5.4
DO48725
0 years, male, NA, stage:1, alive, 780 days
5.4
DO45119
0 years, male, NA, stage:3, dead, 510 days
5.4
DO45149
0 years, female, NA, stage:2, alive, 1260 days
5.4
DO23513
0 years, male, NA, stage:3, alive, 1200 days
5.3
DO23541
0 years, male, NA, stage:2, alive, 930 days
5.3
DO45301
0 years, male, NA, stage:2, dead, 1440 days
5.2
DO45091
0 years, male, NA, stage:2, dead, 1320 days
5.2
DO48719
0 years, male, NA, stage:2, alive, 690 days
5.2
DO45243
0 years, female, NA, stage:3, alive, 930 days
5.1
DO50845
0 years, male, NA, stage:3, alive, 210 days
5.0
DO23515
0 years, male, NA, stage:2, alive, 1230 days
5.0
DO45095
0 years, male, NA, stage:2, alive, 1620 days
5.0
DO48716
0 years, male, NA, stage:2, alive, 720 days
5.0
DO50809
0 years, male, NA, stage:3, dead, 720 days
4.9
DO45099
0 years, male, NA, stage:3, alive, 1590 days
4.9
DO23528
0 years, female, NA, stage:2, alive, 1020 days
4.9
DO45261
0 years, male, NA, stage:3, alive, 990 days
4.9
DO23546
0 years, male, NA, stage:2, alive, 1050 days
4.8
DO50859
0 years, male, NA, stage:2, alive, 180 days
4.8
DO45257
0 years, male, NA, stage:3, alive, 810 days
4.8
DO48672
0 years, male, NA, stage:2, alive, 450 days
4.8
DO50791
0 years, female, NA, stage:1, dead, 480 days
4.8
DO48757
0 years, female, NA, stage:3, alive, 480 days
4.8
DO48721
0 years, female, NA, stage:1, alive, 900 days
4.8
DO23519
0 years, male, NA, stage:3, alive, 630 days
4.7
DO50825
0 years, male, NA, stage:2, alive, 390 days
4.7
DO23551
0 years, male, NA, stage:3, dead, 150 days
4.7
DO45093
0 years, male, NA, stage:2, dead, 720 days
4.7
DO48747
0 years, male, NA, stage:3, alive, 540 days
4.7
DO45181
0 years, female, NA, stage:2, alive, 1200 days
4.7
DO23531
0 years, female, NA, stage:3, alive, 900 days
4.7
DO45129
0 years, male, NA, stage:3, alive, 1470 days
4.7
DO50807
0 years, male, NA, stage:1, alive, 540 days
4.6
DO50855
0 years, male, NA, stage:2, alive, 570 days
4.6
DO45096
0 years, male, NA, stage:2, dead, 1290 days
4.6
DO45115
0 years, male, NA, stage:2, alive, 840 days
4.6
DO50829
0 years, male, NA, stage:3, alive, 570 days
4.6
DO48742
0 years, male, NA, stage:2, alive, 600 days
4.5
DO45201
0 years, male, NA, stage:1, alive, 900 days
4.4
DO50822
0 years, male, NA, stage:2, alive, 510 days
4.3
DO45105
0 years, male, NA, stage:1, alive, 1680 days
4.3
DO45161
0 years, male, NA, stage:2, dead, 540 days
4.2
DO23543
0 years, male, NA, stage:2, alive, 1020 days
4.2
DO45113
0 years, male, NA, stage:3, alive, 1560 days
4.2
DO45285
0 years, male, NA, stage:3, alive, 480 days
4.1
DO45253
0 years, male, NA, stage:2, alive, 870 days
4.1
DO45109
0 years, male, NA, stage:2, alive, 1590 days
4.0
DO45241
0 years, male, NA, stage:1, alive, 1080 days
4.0
DO45299
0 years, female, NA, stage:1, alive, 1440 days
3.8
DO23508
0 years, female, NA, stage:2, alive, 390 days
3.8
DO48693
0 years, male, NA, stage:2, alive, 900 days
3.8
DO50776
0 years, male, NA, stage:1, alive, 690 days
3.8
DO23525
0 years, male, NA, stage:4, alive, 1050 days
3.8
DO45143
0 years, male, NA, stage:3, alive, 1290 days
3.7
DO48715
0 years, female, NA, stage:2, dead, 690 days
3.7
DO50840
0 years, male, NA, stage:2, alive, 330 days
3.7
DO50806
0 years, male, NA, stage:4, alive, 540 days
3.6
DO45255
0 years, male, NA, stage:3, alive, 720 days
3.6
DO45092
0 years, male, NA, stage:4, dead, 1200 days
3.5
DO45305
0 years, male, NA, stage:4, alive, 300 days
3.5
DO23552
0 years, female, NA, stage:1, alive, 810 days
3.5
DO23532
0 years, female, NA, stage:1, alive, 960 days
3.5
DO50813
0 years, male, NA, stage:2, alive, 420 days
3.5
DO23534
0 years, male, NA, stage:2, alive, 840 days
3.4
DO23550
0 years, male, NA, stage:1, alive, 990 days
3.4
DO45307
0 years, female, NA, stage:4, dead, 240 days
3.3
DO50789
0 years, female, NA, stage:2, alive, 570 days
3.3
DO50793
0 years, male, NA, stage:4, alive, 540 days
3.2
DO23545
0 years, male, NA, stage:2, dead, 570 days
3.2
DO45094
0 years, male, NA, stage:3, alive, 1650 days
3.1
DO50805
0 years, male, NA, stage:2, alive, 690 days
3.0
DO227801
0 years, female, NA, stage:1, alive, 660 days
3.0
DO45215
0 years, male, NA, stage:2, alive, 1170 days
3.0
DO23538
0 years, male, NA, stage:2, alive, 450 days
2.9
DO50818
0 years, male, NA, stage:2, alive, 510 days
2.9
DO23516
0 years, male, NA, stage:3, dead, 20 days
2.9
DO23540
0 years, male, NA, stage:1, alive, 750 days
2.9
DO48760
0 years, female, NA, stage:2, alive, 690 days
2.9
DO48701
0 years, male, NA, stage:2, alive, 780 days
2.9
DO50802
0 years, male, NA, stage:2, alive, 930 days
2.8
DO50808
0 years, male, NA, stage:2, alive, 570 days
2.7
DO50832
0 years, male, NA, stage:3, alive, 90 days
2.7
DO45245
0 years, female, NA, stage:2, dead, 240 days
2.7
DO45229
0 years, male, NA, stage:1, alive, 990 days
2.7
DO50816
0 years, male, NA, stage:2, alive, 390 days
2.7
DO48704
0 years, female, NA, stage:3, alive, 750 days
2.7
DO227643
0 years, male, NA, stage:2, alive, 1260 days
2.6
DO48759
0 years, male, NA, stage:3, alive, 720 days
2.6
DO50785
0 years, male, NA, stage:4, dead, 90 days
2.4
DO45297
0 years, female, NA, stage:4, dead, 1260 days
2.4
DO23548
0 years, female, NA, stage:1, alive, 840 days
2.4
DO50814
0 years, male, NA, stage:3, alive, 420 days
2.4
DO48741
0 years, male, NA, stage:3, alive, 240 days
2.4
DO45101
0 years, male, NA, stage:2, alive, 1680 days
2.3
DO48682
0 years, female, NA, stage:3, dead, 120 days
2.3
DO23511
0 years, female, NA, stage:3, dead, 180 days
2.3
DO45175
0 years, male, NA, stage:2, alive, 1140 days
2.2
DO45123
0 years, female, NA, stage:2, dead, 570 days
2.2
DO23512
0 years, male, NA, stage:1, alive, 1260 days
2.1
DO23539
0 years, male, NA, stage:1, alive, 1110 days
2.0
DO23544
0 years, male, NA, stage:2, alive, 960 days
2.0
DO23517
0 years, male, NA, stage:2, alive, 1200 days
1.9
DO48727
0 years, female, NA, stage:2, dead, 390 days
1.9
DO50839
0 years, female, NA, stage:3, alive, 330 days
1.8
DO45107
0 years, female, NA, stage:2, alive, 1710 days
1.8
DO48746
0 years, male, NA, stage:3, alive, 570 days
1.7
DO45195
0 years, male, NA, stage:1, alive, 390 days
1.6
DO48751
0 years, male, NA, stage:2, dead, 480 days
1.6
DO50817
0 years, male, NA, stage:2, alive, 390 days
1.5
DO48674
0 years, male, NA, stage:2, alive, 1260 days
1.4
DO45211
0 years, male, NA, stage:3, alive, 240 days
1.4
DO50804
0 years, male, NA, stage:2, alive, 720 days
1.4
DO45167
0 years, male, NA, stage:2, dead, 1440 days
1.3
DO48679
0 years, male, NA, stage:2, alive, 1200 days
1.3
DO48677
0 years, male, NA, stage:3, alive, 1140 days
1.3
DO23533
0 years, male, NA, stage:2, alive, 900 days
1.3
DO50783
0 years, male, NA, stage:3, alive, 480 days
1.3
DO48723
0 years, male, NA, stage:1, alive, 600 days
1.2
DO45199
0 years, female, NA, stage:2, alive, 1350 days
1.2
DO45169
0 years, male, NA, stage:3, alive, 1350 days
1.1
DO45097
0 years, male, NA, stage:3, alive, 1620 days
1.0
DO50811
0 years, male, NA, stage:1, alive, 450 days
0.8
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
743
Tumor
1.4
227
Tumor
1.0
983
Tumor
0.9
817
Tumor
0.9
367
Tumor
0.8
567
Tumor
0.8
537
Tumor
0.8
463
Tumor
0.8
131
Tumor
0.8
975
Tumor
0.8
911
Tumor
0.7
1031
Tumor
0.7
221
Tumor
0.7
1021
Tumor
0.7
363
Tumor
0.7
937
Tumor
0.6
285
Tumor
0.6
277
Tumor
0.6
435
Tumor
0.6
147
Tumor
0.6
497
Tumor
0.6
413
Tumor
0.6
523
Tumor
0.6
387
Tumor
0.5
815
Tumor
0.5
487
Tumor
0.5
883
Tumor
0.5
923
Tumor
0.5
331
Tumor
0.5
963
Tumor
0.5
745
Tumor
0.5
341
Tumor
0.5
192
Normal
0.5
391
Tumor
0.5
967
Tumor
0.5
527
Tumor
0.4
517
Tumor
0.4
867
Tumor
0.4
861
Tumor
0.4
737
Tumor
0.4
1043
Tumor
0.4
813
Tumor
0.4
473
Tumor
0.4
958
Normal
0.4
741
Tumor
0.3
471
Tumor
0.3
661
Tumor
0.3
921
Tumor
0.3
448
Normal
0.3
431
Tumor
0.3
571
Tumor
0.3
925
Tumor
0.3
223
Tumor
0.3
412
Normal
0.3
425
Tumor
0.3
492
Normal
0.2
724
Normal
0.2
915
Tumor
0.2
271
Tumor
0.2
756
Normal
0.2
483
Tumor
0.2
873
Tumor
0.2
267
Tumor
0.2
535
Tumor
0.2
355
Tumor
0.2
1015
Tumor
0.2
141
Tumor
0.2
965
Tumor
0.2
212
Normal
0.2
516
Normal
0.2
465
Tumor
0.2
123
Tumor
0.2
1013
Tumor
0.2
491
Tumor
0.2
415
Tumor
0.2
884
Normal
0.2
411
Tumor
0.2
494
Normal
0.2
716
Normal
0.2
981
Tumor
0.2
1041
Tumor
0.1
1025
Tumor
0.1
447
Tumor
0.1
526
Normal
0.1
617
Tumor
0.1
938
Normal
0.1
953
Tumor
0.1
976
Normal
0.1
851
Tumor
0.1
882
Normal
0.1
534
Normal
0.1
912
Normal
0.1
558
Normal
0.1
672
Normal
0.1
148
Normal
0.1
641
Tumor
0.1
451
Tumor
0.1
1032
Normal
0.1
146
Normal
0.1
472
Normal
0.1
564
Normal
0.1
217
Tumor
0.1
553
Tumor
0.1
1042
Normal
0.1
311
Tumor
0.1
574
Normal
0.1
1014
Normal
0.1
663
Tumor
0.1
124
Normal
0.1
944
Normal
0.1
881
Tumor
0.1
498
Normal
0.1
528
Normal
0.1
816
Normal
0.1
714
Normal
0.1
696
Normal
0.1
525
Tumor
0.1
388
Normal
0.1
662
Normal
0.1
878
Normal
0.1
444
Normal
0.1
186
Normal
0.1
185
Tumor
0.1
125
Tumor
0.1
536
Normal
0.1
352
Normal
0.1
572
Normal
0.1
327
Tumor
0.1
286
Normal
0.1
423
Tumor
0.1
364
Normal
0.1
982
Normal
0.1
228
Normal
0.1
524
Normal
0.1
416
Normal
0.1
138
Normal
0.1
916
Normal
0.1
1045
Tumor
0.1
664
Normal
0.1
127
Tumor
0.1
951
Tumor
0.0
224
Normal
0.0
744
Normal
0.0
478
Normal
0.0
384
Normal
0.0
546
Normal
0.0
874
Normal
0.0
943
Tumor
0.0
824
Normal
0.0
568
Normal
0.0
514
Normal
0.0
358
Normal
0.0
1044
Normal
0.0
538
Normal
0.0
924
Normal
0.0
615
Tumor
0.0
727
Tumor
0.0
356
Normal
0.0
814
Normal
0.0
414
Normal
0.0
354
Normal
0.0
278
Normal
0.0
868
Normal
0.0
284
Normal
0.0
432
Normal
0.0
218
Normal
0.0
984
Normal
0.0
142
Normal
0.0
922
Normal
0.0
386
Normal
0.0
518
Normal
0.0
462
Normal
0.0
422
Normal
0.0
968
Normal
0.0
126
Normal
0.0
647
Tumor
0.0
297
Tumor
0.0
482
Normal
0.0
383
Tumor
0.0
484
Normal
0.0
618
Normal
0.0
314
Normal
0.0
858
Normal
0.0
365
Tumor
0.0
488
Normal
0.0
823
Tumor
0.0
862
Normal
0.0
421
Tumor
0.0
232
Normal
0.0
913
Tumor
0.0
466
Normal
0.0
573
Tumor
0.0
742
Normal
0.0
283
Tumor
0.0
361
Tumor
0.0
272
Normal
0.0
136
Normal
0.0
533
Tumor
0.0
385
Tumor
0.0
474
Normal
0.0
351
Tumor
0.0
563
Tumor
-0.1
926
Normal
-0.1
636
Normal
-0.1
357
Tumor
-0.1
628
Normal
-0.1
394
Normal
-0.1
1022
Normal
-0.1
328
Normal
-0.1
918
Normal
-0.1
964
Normal
-0.1
468
Normal
-0.1
966
Normal
-0.1
376
Normal
-0.1
778
Normal
-0.1
313
Tumor
-0.1
818
Normal
-0.1
852
Normal
-0.1
162
Normal
-0.1
914
Normal
-0.1
113
Tumor
-0.1
424
Normal
-0.1
738
Normal
-0.1
917
Tumor
-0.1
332
Normal
-0.1
452
Normal
-0.1
695
Tumor
-0.1
145
Tumor
-0.1
755
Tumor
-0.1
978
Normal
-0.1
686
Normal
-0.1
713
Tumor
-0.1
554
Normal
-0.1
112
Tumor
-0.1
172
Normal
-0.1
1046
Normal
-0.1
353
Tumor
-0.1
746
Normal
-0.1
214
Normal
-0.1
685
Tumor
-0.1
866
Normal
-0.1
436
Normal
-0.1
312
Normal
-0.1
627
Tumor
-0.1
461
Tumor
-0.1
392
Normal
-0.1
956
Normal
-0.1
666
Normal
-0.1
257
Tumor
-0.1
396
Normal
-0.1
728
Normal
-0.1
434
Normal
-0.1
954
Normal
-0.1
642
Normal
-0.1
616
Normal
-0.1
446
Normal
-0.1
161
Tumor
-0.1
343
Tumor
-0.1
111
Normal
-0.1
464
Normal
-0.1
428
Normal
-0.2
977
Tumor
-0.2
426
Normal
-0.2
786
Normal
-0.2
456
Normal
-0.2
366
Normal
-0.2
697
Tumor
-0.2
132
Normal
-0.2
196
Normal
-0.2
191
Tumor
-0.2
952
Normal
-0.2
362
Normal
-0.2
368
Normal
-0.2
128
Normal
-0.2
648
Normal
-0.2
268
Normal
-0.2
188
Normal
-0.2
515
Tumor
-0.2
723
Tumor
-0.2
427
Tumor
-0.2
722
Normal
-0.2
344
Normal
-0.2
258
Normal
-0.2
455
Tumor
-0.2
864
Normal
-0.2
222
Normal
-0.2
545
Tumor
-0.2
698
Normal
-0.2
1026
Normal
-0.2
671
Tumor
-0.2
1016
Normal
-0.2
957
Tumor
-0.2
114
Normal
-0.2
777
Tumor
-0.2
262
Normal
-0.2
187
Tumor
-0.2
1028
Normal
-0.2
433
Tumor
-0.3
171
Tumor
-0.3
137
Tumor
-0.3
261
Tumor
-0.3
443
Tumor
-0.3
298
Normal
-0.3
877
Tumor
-0.3
863
Tumor
-0.3
395
Tumor
-0.3
665
Tumor
-0.3
342
Normal
-0.3
715
Tumor
-0.4
513
Tumor
-0.4
721
Tumor
-0.4
195
Tumor
-0.4
1027
Tumor
-0.4
467
Tumor
-0.4
231
Tumor
-0.5
477
Tumor
-0.5
493
Tumor
-0.5
635
Tumor
-0.5
857
Tumor
-0.5
393
Tumor
-0.5
213
Tumor
-0.6
955
Tumor
-0.7
445
Tumor
-0.7
135
Tumor
-0.7
865
Tumor
-0.7
211
Tumor
-0.7
375
Tumor
-0.7
481
Tumor
-0.9
785
Tumor
-0.9
557
Tumor
-1.0
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
