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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
HNRNPDL is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
56.9
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
216.7
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
192.7
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
180.8
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
163.5
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
149.4
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
146.5
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
141.0
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
139.8
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
138.2
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
136.9
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
129.9
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
128.8
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
128.7
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
126.4
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
125.1
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
124.9
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
121.1
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
118.8
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
117.5
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
115.0
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
111.9
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
110.0
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
109.2
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
108.0
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
107.3
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
107.3
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
107.1
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
103.0
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
102.9
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
102.1
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
101.3
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
100.9
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
100.5
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
98.8
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
98.3
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
96.9
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
96.0
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
96.0
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
95.1
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
94.0
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
93.8
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
93.3
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
93.3
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
91.8
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
91.7
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
90.2
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
90.1
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
90.0
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
88.2
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
87.9
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
87.5
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
87.3
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
87.3
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
87.3
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
86.2
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
85.7
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
85.5
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
83.9
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
83.7
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
83.2
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
83.2
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
83.2
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
81.8
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
81.3
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
81.3
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
80.6
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
80.5
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
80.4
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
79.3
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
79.2
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
78.8
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
78.4
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
78.1
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
78.0
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
77.9
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
77.9
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
77.5
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
76.4
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
76.4
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
76.1
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
75.6
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
75.4
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
74.4
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
74.1
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
73.5
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
72.6
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
72.3
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
72.0
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
71.5
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
70.7
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
70.7
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
70.7
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
70.6
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
70.5
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
70.4
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
69.9
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
69.7
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
69.4
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
69.2
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
68.7
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
68.6
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
68.6
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
68.1
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
67.6
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
67.5
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
67.3
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
67.1
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
66.9
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
66.8
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
66.3
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
66.0
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
66.0
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
65.5
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
64.8
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
64.8
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
64.2
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
63.9
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
63.8
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
63.5
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
63.5
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
63.4
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
62.9
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
62.7
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
62.0
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
61.7
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
61.5
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
61.4
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
61.3
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
61.2
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
61.1
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
60.2
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
60.2
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
60.0
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
59.7
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
59.2
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
59.1
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
58.8
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
58.8
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
58.7
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
58.4
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
58.3
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
58.2
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
58.1
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
58.1
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
58.0
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
57.5
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
57.5
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
57.3
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
57.0
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
56.7
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
56.5
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
56.0
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
56.0
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
55.6
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
55.5
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
55.3
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
55.2
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
54.9
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
54.9
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
54.5
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
54.3
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
53.9
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
53.8
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
53.6
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
53.5
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
53.3
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
53.2
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
52.7
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
52.7
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
52.6
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
52.5
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
52.4
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
52.3
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
52.1
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
52.1
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
51.9
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
51.7
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
51.3
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
51.0
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
50.4
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
50.1
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
50.0
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
49.8
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
49.2
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
49.2
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
49.0
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
48.9
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
48.9
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
48.5
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
48.5
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
48.5
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
48.4
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
48.3
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
48.0
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
47.6
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
47.6
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
47.4
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
47.3
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
47.2
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
46.9
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
46.8
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
46.5
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
46.5
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
46.0
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
45.6
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
45.5
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
45.4
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
45.3
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
45.1
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
45.1
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
45.1
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
44.8
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
44.8
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
44.7
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
44.7
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
44.7
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
44.3
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
44.3
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
44.1
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
44.1
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
43.2
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
43.1
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
43.0
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
42.8
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
42.5
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
42.4
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
42.1
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
42.0
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
42.0
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
41.7
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
41.6
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
41.3
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
41.0
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
40.9
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
40.7
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
40.6
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
40.6
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
40.5
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
40.5
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
40.3
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
40.3
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
40.3
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
40.1
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
40.0
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
39.9
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
39.9
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
39.7
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
39.7
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
39.6
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
39.5
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
39.5
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
39.1
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
38.9
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
38.7
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
38.6
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
38.2
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
38.1
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
38.0
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
37.5
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
37.3
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
37.2
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
36.7
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
36.4
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
36.3
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
36.2
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
35.8
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
35.8
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
35.7
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
35.6
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
35.6
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
35.5
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
35.1
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
35.0
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
34.3
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
34.3
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
34.3
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
34.3
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
34.0
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
34.0
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
33.9
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
33.7
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
33.6
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
33.5
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
33.4
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
32.8
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
32.7
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
32.7
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
32.5
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
32.3
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
32.2
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
32.1
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
31.9
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
31.9
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
31.8
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
31.5
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
31.4
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
30.9
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
30.8
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
30.5
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
29.9
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
29.6
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
29.4
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
29.3
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
29.2
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
28.8
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
28.8
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
28.8
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
28.5
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
28.3
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
28.2
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
27.9
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
27.6
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
27.6
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
27.6
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
27.5
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
27.4
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
27.3
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
27.2
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
27.0
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
26.5
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
26.4
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
26.1
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
25.7
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
25.6
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
25.1
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
25.0
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
24.9
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
24.7
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
24.4
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
24.3
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
24.0
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
23.5
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
23.1
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
22.8
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
22.1
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
22.0
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
21.6
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
20.8
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
20.1
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
19.9
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
19.8
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
19.5
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
19.5
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
19.5
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
18.9
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
18.0
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
17.0
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
17.0
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
16.9
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
16.8
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
16.4
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
14.9
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
14.8
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
14.4
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
13.9
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
13.2
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
12.6
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
12.2
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
11.8
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
11.5
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
10.5
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
Survival analysis data not available.
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
965
Tumor
1.5
743
Tumor
1.3
661
Tumor
1.2
131
Tumor
1.1
951
Tumor
1.0
285
Tumor
0.9
487
Tumor
0.9
977
Tumor
0.9
983
Tumor
0.8
473
Tumor
0.8
1031
Tumor
0.8
817
Tumor
0.8
517
Tumor
0.8
921
Tumor
0.7
877
Tumor
0.7
351
Tumor
0.7
537
Tumor
0.7
647
Tumor
0.7
367
Tumor
0.7
881
Tumor
0.6
815
Tumor
0.6
355
Tumor
0.6
727
Tumor
0.6
545
Tumor
0.6
463
Tumor
0.6
447
Tumor
0.6
385
Tumor
0.6
211
Tumor
0.6
283
Tumor
0.6
975
Tumor
0.6
271
Tumor
0.6
967
Tumor
0.5
755
Tumor
0.5
1021
Tumor
0.5
943
Tumor
0.5
523
Tumor
0.5
715
Tumor
0.5
724
Normal
0.5
814
Normal
0.5
867
Tumor
0.4
923
Tumor
0.4
1025
Tumor
0.4
467
Tumor
0.4
277
Tumor
0.4
641
Tumor
0.4
425
Tumor
0.4
431
Tumor
0.4
695
Tumor
0.4
297
Tumor
0.4
123
Tumor
0.4
1041
Tumor
0.4
553
Tumor
0.4
917
Tumor
0.4
497
Tumor
0.4
161
Tumor
0.4
535
Tumor
0.4
341
Tumor
0.3
227
Tumor
0.3
963
Tumor
0.3
525
Tumor
0.3
883
Tumor
0.3
937
Tumor
0.3
112
Tumor
0.3
221
Tumor
0.3
171
Tumor
0.3
861
Tumor
0.3
573
Tumor
0.3
135
Tumor
0.3
413
Tumor
0.3
957
Tumor
0.3
737
Tumor
0.3
477
Tumor
0.3
331
Tumor
0.3
471
Tumor
0.3
1015
Tumor
0.3
311
Tumor
0.3
865
Tumor
0.3
911
Tumor
0.3
813
Tumor
0.2
785
Tumor
0.2
363
Tumor
0.2
635
Tumor
0.2
141
Tumor
0.2
741
Tumor
0.2
415
Tumor
0.2
851
Tumor
0.2
391
Tumor
0.2
455
Tumor
0.2
427
Tumor
0.2
411
Tumor
0.2
435
Tumor
0.2
147
Tumor
0.2
443
Tumor
0.2
187
Tumor
0.2
671
Tumor
0.2
567
Tumor
0.1
915
Tumor
0.1
873
Tumor
0.1
383
Tumor
0.1
777
Tumor
0.1
125
Tumor
0.1
113
Tumor
0.1
421
Tumor
0.1
533
Tumor
0.1
697
Tumor
0.1
1043
Tumor
0.1
492
Normal
0.1
483
Tumor
0.1
823
Tumor
0.1
433
Tumor
0.1
261
Tumor
0.1
185
Tumor
0.1
257
Tumor
0.1
127
Tumor
0.1
685
Tumor
0.1
327
Tumor
0.1
665
Tumor
0.1
981
Tumor
0.0
491
Tumor
0.0
863
Tumor
0.0
375
Tumor
0.0
451
Tumor
0.0
498
Normal
0.0
955
Tumor
0.0
536
Normal
0.0
617
Tumor
0.0
878
Normal
0.0
1013
Tumor
0.0
493
Tumor
0.0
538
Normal
0.0
857
Tumor
-0.1
744
Normal
-0.1
478
Normal
-0.1
944
Normal
-0.1
343
Tumor
-0.1
393
Tumor
-0.1
524
Normal
-0.1
954
Normal
-0.1
916
Normal
-0.1
913
Tumor
-0.1
966
Normal
-0.1
268
Normal
-0.1
925
Tumor
-0.1
231
Tumor
-0.1
213
Tumor
-0.1
387
Tumor
-0.1
267
Tumor
-0.1
357
Tumor
-0.1
313
Tumor
-0.1
192
Normal
-0.1
571
Tumor
-0.2
924
Normal
-0.2
412
Normal
-0.2
217
Tumor
-0.2
1028
Normal
-0.2
663
Tumor
-0.2
554
Normal
-0.2
444
Normal
-0.2
284
Normal
-0.2
224
Normal
-0.2
952
Normal
-0.2
384
Normal
-0.2
527
Tumor
-0.2
434
Normal
-0.2
852
Normal
-0.2
984
Normal
-0.2
146
Normal
-0.2
557
Tumor
-0.2
546
Normal
-0.2
858
Normal
-0.2
818
Normal
-0.2
484
Normal
-0.2
212
Normal
-0.2
938
Normal
-0.2
953
Tumor
-0.2
1032
Normal
-0.2
742
Normal
-0.2
516
Normal
-0.2
721
Tumor
-0.2
958
Normal
-0.2
746
Normal
-0.2
534
Normal
-0.2
1026
Normal
-0.2
1022
Normal
-0.2
395
Tumor
-0.2
778
Normal
-0.2
738
Normal
-0.2
445
Tumor
-0.2
866
Normal
-0.2
448
Normal
-0.2
488
Normal
-0.3
386
Normal
-0.3
368
Normal
-0.3
824
Normal
-0.3
126
Normal
-0.3
698
Normal
-0.3
968
Normal
-0.3
191
Tumor
-0.3
716
Normal
-0.3
528
Normal
-0.3
298
Normal
-0.3
223
Tumor
-0.3
352
Normal
-0.3
1045
Tumor
-0.3
922
Normal
-0.3
461
Tumor
-0.3
228
Normal
-0.3
696
Normal
-0.3
481
Tumor
-0.3
188
Normal
-0.3
494
Normal
-0.3
882
Normal
-0.3
918
Normal
-0.3
728
Normal
-0.3
864
Normal
-0.3
1044
Normal
-0.3
874
Normal
-0.3
862
Normal
-0.3
128
Normal
-0.3
286
Normal
-0.3
563
Tumor
-0.3
756
Normal
-0.3
344
Normal
-0.3
518
Normal
-0.3
124
Normal
-0.3
976
Normal
-0.3
142
Normal
-0.3
786
Normal
-0.3
868
Normal
-0.3
361
Tumor
-0.3
964
Normal
-0.3
472
Normal
-0.3
745
Tumor
-0.3
914
Normal
-0.4
816
Normal
-0.4
664
Normal
-0.4
628
Normal
-0.4
686
Normal
-0.4
376
Normal
-0.4
312
Normal
-0.4
332
Normal
-0.4
926
Normal
-0.4
982
Normal
-0.4
714
Normal
-0.4
1016
Normal
-0.4
364
Normal
-0.4
1027
Tumor
-0.4
1014
Normal
-0.4
362
Normal
-0.4
474
Normal
-0.4
396
Normal
-0.4
956
Normal
-0.4
666
Normal
-0.4
662
Normal
-0.4
884
Normal
-0.4
672
Normal
-0.4
366
Normal
-0.4
145
Tumor
-0.4
436
Normal
-0.4
465
Tumor
-0.4
272
Normal
-0.4
1042
Normal
-0.4
388
Normal
-0.4
262
Normal
-0.4
137
Tumor
-0.4
912
Normal
-0.4
342
Normal
-0.4
713
Tumor
-0.4
416
Normal
-0.4
394
Normal
-0.4
723
Tumor
-0.5
111
Normal
-0.5
462
Normal
-0.5
214
Normal
-0.5
392
Normal
-0.5
278
Normal
-0.5
114
Normal
-0.5
232
Normal
-0.5
1046
Normal
-0.5
468
Normal
-0.5
978
Normal
-0.5
258
Normal
-0.5
648
Normal
-0.5
314
Normal
-0.5
514
Normal
-0.5
423
Tumor
-0.5
482
Normal
-0.5
196
Normal
-0.5
138
Normal
-0.5
365
Tumor
-0.5
526
Normal
-0.5
456
Normal
-0.5
513
Tumor
-0.5
195
Tumor
-0.5
722
Normal
-0.5
515
Tumor
-0.5
186
Normal
-0.5
446
Normal
-0.5
148
Normal
-0.5
642
Normal
-0.5
466
Normal
-0.5
358
Normal
-0.5
356
Normal
-0.5
354
Normal
-0.6
136
Normal
-0.6
618
Normal
-0.6
132
Normal
-0.6
172
Normal
-0.6
162
Normal
-0.6
574
Normal
-0.6
464
Normal
-0.6
432
Normal
-0.6
218
Normal
-0.6
328
Normal
-0.6
222
Normal
-0.6
636
Normal
-0.6
558
Normal
-0.6
568
Normal
-0.7
422
Normal
-0.7
616
Normal
-0.7
572
Normal
-0.7
627
Tumor
-0.7
428
Normal
-0.8
452
Normal
-0.8
424
Normal
-0.8
353
Tumor
-0.8
426
Normal
-0.8
564
Normal
-0.8
414
Normal
-0.9
615
Tumor
-0.9
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
