We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
GJA1 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
6.6
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
237.6
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
136.0
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
88.9
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
35.0
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
32.5
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
30.5
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
29.5
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
28.2
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
24.3
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
23.4
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
22.1
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
21.8
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
19.2
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
18.4
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
16.5
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
16.4
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
14.6
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
14.3
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
14.2
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
14.0
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
13.8
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
13.7
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
13.4
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
12.4
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
12.4
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
12.1
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
12.1
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
11.9
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
11.7
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
11.6
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
11.5
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
11.3
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
11.2
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
11.1
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
11.1
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
11.0
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
10.9
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
10.8
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
10.8
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
10.6
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
9.9
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
9.7
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
9.6
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
9.5
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
9.5
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
9.5
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
9.4
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
9.4
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
9.3
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
9.3
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
9.3
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
9.2
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
9.1
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
8.9
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
8.9
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
8.8
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
8.8
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
8.8
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
8.7
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
8.7
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
8.6
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
8.5
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
8.4
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
8.4
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
8.4
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
8.4
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
8.2
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
8.2
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
8.0
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
7.9
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
7.9
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
7.8
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
7.8
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
7.8
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
7.8
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
7.8
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
7.7
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
7.7
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
7.7
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
7.6
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
7.6
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
7.6
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
7.6
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
7.5
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
7.5
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
7.5
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
7.4
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
7.3
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
7.3
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
7.2
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
7.1
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
7.0
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
7.0
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
7.0
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
6.9
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
6.8
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
6.8
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
6.8
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
6.8
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
6.8
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
6.7
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
6.7
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
6.7
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
6.6
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
6.5
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
6.5
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
6.5
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
6.5
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
6.4
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
6.4
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
6.4
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
6.4
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
6.3
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
6.3
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
6.2
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
6.1
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
6.1
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
6.1
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
6.0
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
5.9
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
5.9
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
5.9
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
5.8
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
5.8
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
5.8
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
5.8
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
5.7
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
5.7
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
5.7
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
5.7
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
5.7
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
5.7
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
5.7
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
5.6
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
5.6
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
5.6
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
5.5
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
5.5
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
5.5
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
5.4
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
5.4
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
5.4
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
5.4
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
5.4
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
5.4
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
5.4
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
5.4
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
5.3
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
5.3
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
5.3
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
5.2
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
5.2
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
5.2
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
5.2
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
5.1
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
5.1
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
5.0
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
5.0
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
5.0
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
5.0
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
4.9
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
4.9
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
4.8
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
4.8
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
4.7
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
4.7
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
4.6
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
4.6
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
4.6
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
4.6
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
4.6
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
4.5
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
4.5
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
4.5
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
4.5
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
4.4
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
4.4
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
4.4
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
4.3
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
4.3
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
4.3
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
4.3
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
4.2
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
4.2
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
4.2
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
4.2
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
4.2
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
4.1
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
4.0
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
3.9
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
3.8
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
3.8
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
3.8
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
3.8
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
3.8
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
3.8
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
3.8
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
3.7
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
3.7
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
3.7
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
3.7
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
3.6
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
3.6
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
3.6
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
3.6
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
3.6
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
3.6
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
3.5
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
3.5
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
3.5
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
3.3
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
3.3
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
3.3
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
3.3
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
3.3
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
3.3
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
3.3
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
3.2
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
3.2
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
3.2
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
3.2
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
3.2
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
3.1
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
3.1
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
3.0
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
3.0
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
2.9
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
2.9
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
2.9
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
2.9
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
2.9
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
2.9
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
2.9
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
2.8
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
2.8
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
2.8
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
2.8
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
2.8
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
2.8
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
2.8
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
2.8
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
2.7
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
2.7
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
2.7
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
2.7
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
2.7
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
2.7
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
2.7
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
2.6
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
2.6
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
2.6
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
2.6
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
2.6
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
2.6
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
2.6
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
2.6
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
2.6
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
2.5
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
2.5
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
2.5
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
2.5
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
2.5
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
2.5
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
2.5
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
2.5
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
2.4
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
2.4
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
2.4
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
2.3
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
2.3
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
2.3
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
2.3
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
2.3
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
2.3
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
2.2
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
2.2
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
2.2
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
2.2
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
2.2
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
2.2
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
2.1
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
2.1
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
2.1
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
2.1
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
2.1
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
2.0
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
2.0
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
2.0
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
2.0
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
2.0
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
2.0
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
2.0
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
2.0
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
1.9
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
1.9
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
1.9
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
1.9
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
1.9
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
1.8
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
1.8
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
1.8
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
1.7
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
1.7
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
1.7
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
1.7
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
1.7
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
1.7
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
1.7
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
1.6
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
1.6
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
1.6
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
1.6
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
1.6
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
1.6
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
1.5
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
1.5
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
1.5
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
1.5
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
1.4
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
1.4
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
1.4
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
1.4
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
1.3
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
1.3
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
1.3
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
1.3
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
1.3
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
1.3
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
1.3
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
1.3
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
1.3
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
1.3
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
1.2
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
1.2
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
1.2
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
1.2
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
1.1
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
1.0
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
1.0
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
1.0
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
1.0
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
0.9
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
0.9
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
0.9
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
0.9
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
0.9
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
0.9
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
0.9
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
0.8
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
0.8
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
0.8
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
0.8
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
0.8
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
0.8
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
0.6
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
0.6
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
0.6
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
0.5
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
0.5
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
0.4
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
0.4
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
GJA1 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
9.3
Number of samples
231
Samples
Sample
Description
TPM
DO45245
0 years, female, NA, stage:2, dead, 240 days
144.5
DO45155
0 years, male, NA, stage:2, alive, 2160 days
133.7
DO45211
0 years, male, NA, stage:3, alive, 240 days
70.5
DO23530
0 years, male, NA, stage:4, dead, 180 days
66.8
DO50800
0 years, male, NA, stage:2, alive, 510 days
65.0
DO45307
0 years, female, NA, stage:4, dead, 240 days
45.3
DO45297
0 years, female, NA, stage:4, dead, 1260 days
37.4
DO45103
0 years, male, NA, stage:3, alive, 450 days
31.8
DO48672
0 years, male, NA, stage:2, alive, 450 days
30.5
DO45289
0 years, female, NA, stage:3, alive, 360 days
24.5
DO45261
0 years, male, NA, stage:3, alive, 990 days
24.5
DO23537
0 years, male, NA, stage:2, dead, 900 days
24.5
DO45249
0 years, male, NA, stage:1, alive, 630 days
22.4
DO48759
0 years, male, NA, stage:3, alive, 720 days
22.3
DO45283
0 years, male, NA, stage:3, alive, 510 days
20.0
DO50819
0 years, female, NA, stage:2, alive, 510 days
18.5
DO48717
0 years, male, NA, stage:4, dead, 180 days
18.4
DO45233
0 years, male, NA, stage:3, alive, 900 days
17.6
DO45189
0 years, female, NA, stage:2, alive, 1200 days
17.4
DO45257
0 years, male, NA, stage:3, alive, 810 days
16.9
DO45139
0 years, male, NA, stage:3, alive, 1320 days
16.3
DO45259
0 years, male, NA, stage:3, alive, 330 days
14.8
DO45247
0 years, female, NA, stage:2, alive, 210 days
14.5
DO50855
0 years, male, NA, stage:2, alive, 570 days
14.3
DO45129
0 years, male, NA, stage:3, alive, 1470 days
14.2
DO45279
0 years, male, NA, stage:3, alive, 1290 days
13.9
DO50778
0 years, male, NA, stage:4, alive, 630 days
13.8
DO45135
0 years, male, NA, stage:1, alive, 1410 days
13.8
DO45263
0 years, male, NA, stage:3, dead, 270 days
13.8
DO45141
0 years, male, NA, stage:2, alive, 1320 days
13.6
DO45285
0 years, male, NA, stage:3, alive, 480 days
13.6
DO23514
0 years, male, NA, stage:2, alive, 1290 days
13.0
DO45201
0 years, male, NA, stage:1, alive, 900 days
12.8
DO45255
0 years, male, NA, stage:3, alive, 720 days
12.7
DO45119
0 years, male, NA, stage:3, dead, 510 days
12.6
DO45231
0 years, male, NA, stage:2, alive, 930 days
12.4
DO45205
0 years, female, NA, stage:2, dead, 90 days
12.4
DO23523
0 years, male, NA, stage:3, alive, 1080 days
12.3
DO48728
0 years, female, NA, stage:2, alive, 150 days
12.3
DO48681
0 years, male, NA, stage:2, alive, 900 days
12.3
DO45092
0 years, male, NA, stage:4, dead, 1200 days
12.1
DO45165
0 years, male, NA, stage:2, alive, 690 days
11.9
DO48716
0 years, male, NA, stage:2, alive, 720 days
11.8
DO50808
0 years, male, NA, stage:2, alive, 570 days
11.6
DO45197
0 years, male, NA, stage:2, alive, 1170 days
11.4
DO48720
0 years, female, NA, stage:2, alive, 570 days
11.4
DO45207
0 years, male, NA, stage:1, alive, 1050 days
11.0
DO48761
0 years, male, NA, stage:2, alive, 870 days
11.0
DO45253
0 years, male, NA, stage:2, alive, 870 days
11.0
DO50805
0 years, male, NA, stage:2, alive, 690 days
10.9
DO50798
0 years, male, NA, stage:3, dead, 30 days
10.6
DO45203
0 years, female, NA, stage:2, alive, 1170 days
10.3
DO45221
0 years, female, NA, stage:4, dead, 390 days
10.2
DO50829
0 years, male, NA, stage:3, alive, 570 days
10.2
DO50789
0 years, female, NA, stage:2, alive, 570 days
10.1
DO48700
0 years, female, NA, stage:2, alive, 810 days
10.1
DO45251
0 years, female, NA, stage:2, alive, 900 days
10.1
DO23528
0 years, female, NA, stage:2, alive, 1020 days
10.0
DO45301
0 years, male, NA, stage:2, dead, 1440 days
10.0
DO45193
0 years, female, NA, stage:4, dead, 120 days
9.9
DO45287
0 years, male, NA, stage:1, alive, 390 days
9.8
DO48712
0 years, male, NA, stage:2, alive, 810 days
9.8
DO45273
0 years, male, NA, stage:2, alive, 480 days
9.8
DO50822
0 years, male, NA, stage:2, alive, 510 days
9.8
DO23515
0 years, male, NA, stage:2, alive, 1230 days
9.8
DO50857
0 years, male, NA, stage:2, alive, 210 days
9.7
DO50807
0 years, male, NA, stage:1, alive, 540 days
9.7
DO48746
0 years, male, NA, stage:3, alive, 570 days
9.5
DO50809
0 years, male, NA, stage:3, dead, 720 days
9.3
DO45177
0 years, female, NA, stage:3, alive, 1260 days
9.3
DO45091
0 years, male, NA, stage:2, dead, 1320 days
9.2
DO45097
0 years, male, NA, stage:3, alive, 1620 days
9.2
DO50820
0 years, female, NA, stage:3, alive, 510 days
9.2
DO45183
0 years, female, NA, stage:2, dead, 570 days
9.1
DO45303
0 years, female, NA, stage:3, alive, 990 days
9.1
DO45187
0 years, female, NA, stage:1, alive, 1260 days
9.0
DO45157
0 years, male, NA, stage:2, alive, 1980 days
9.0
DO48733
0 years, male, NA, stage:2, alive, 600 days
8.9
DO45225
0 years, male, NA, stage:1, alive, 1050 days
8.9
DO23510
0 years, female, NA, stage:2, alive, 870 days
8.8
DO50832
0 years, male, NA, stage:3, alive, 90 days
8.7
DO23552
0 years, female, NA, stage:1, alive, 810 days
8.6
DO45111
0 years, male, NA, stage:2, alive, 1590 days
8.6
DO45185
0 years, male, NA, stage:2, alive, 600 days
8.4
DO48730
0 years, female, NA, stage:2, alive, 630 days
8.2
DO45267
0 years, male, NA, stage:3, dead, 570 days
8.1
DO48747
0 years, male, NA, stage:3, alive, 540 days
8.1
DO50825
0 years, male, NA, stage:2, alive, 390 days
8.0
DO45223
0 years, male, NA, stage:4, alive, 1020 days
7.9
DO23518
0 years, male, NA, stage:2, alive, 1320 days
7.8
DO23551
0 years, male, NA, stage:3, dead, 150 days
7.7
DO23524
0 years, female, NA, stage:2, alive, 1050 days
7.7
DO23545
0 years, male, NA, stage:2, dead, 570 days
7.7
DO45121
0 years, male, NA, stage:3, alive, 1530 days
7.6
DO50787
0 years, male, NA, stage:3, alive, 480 days
7.6
DO23547
0 years, male, NA, stage:1, alive, 1020 days
7.4
DO50774
0 years, female, NA, stage:2, alive, 720 days
7.4
DO50850
0 years, male, NA, stage:3, alive, 720 days
7.4
DO50815
0 years, male, NA, stage:3, alive, 150 days
7.4
DO45095
0 years, male, NA, stage:2, alive, 1620 days
7.3
DO23542
0 years, male, NA, stage:3, alive, 960 days
7.3
DO45281
0 years, male, NA, stage:4, alive, 750 days
7.2
DO23536
0 years, male, NA, stage:2, alive, 930 days
7.0
DO45127
0 years, male, NA, stage:3, dead, 420 days
6.9
DO48697
0 years, female, NA, stage:2, dead, 810 days
6.9
DO45153
0 years, female, NA, stage:2, alive, 1380 days
6.8
DO50817
0 years, male, NA, stage:2, alive, 390 days
6.7
DO23521
0 years, male, NA, stage:3, alive, 1110 days
6.6
DO48736
0 years, female, NA, stage:1, alive, 600 days
6.6
DO45213
0 years, male, NA, stage:1, alive, 1200 days
6.3
DO48677
0 years, male, NA, stage:3, alive, 1140 days
6.3
DO48732
0 years, male, NA, stage:3, alive, 630 days
6.3
DO48743
0 years, female, NA, stage:2, alive, 570 days
6.2
DO48682
0 years, female, NA, stage:3, dead, 120 days
6.2
DO50793
0 years, male, NA, stage:4, alive, 540 days
6.1
DO45179
0 years, female, NA, stage:2, alive, 600 days
6.1
DO23535
0 years, male, NA, stage:1, alive, 960 days
6.0
DO48701
0 years, male, NA, stage:2, alive, 780 days
5.9
DO48719
0 years, male, NA, stage:2, alive, 690 days
5.9
DO23527
0 years, male, NA, stage:1, alive, 1050 days
5.9
DO50806
0 years, male, NA, stage:4, alive, 540 days
5.8
DO48725
0 years, male, NA, stage:1, alive, 780 days
5.8
DO48757
0 years, female, NA, stage:3, alive, 480 days
5.8
DO48727
0 years, female, NA, stage:2, dead, 390 days
5.8
DO45219
0 years, male, NA, stage:2, alive, 1080 days
5.7
DO23531
0 years, female, NA, stage:3, alive, 900 days
5.6
DO45181
0 years, female, NA, stage:2, alive, 1200 days
5.6
DO50783
0 years, male, NA, stage:3, alive, 480 days
5.6
DO45159
0 years, male, NA, stage:3, alive, 1470 days
5.6
DO23529
0 years, male, NA, stage:4, alive, 930 days
5.5
DO50804
0 years, male, NA, stage:2, alive, 720 days
5.5
DO48715
0 years, female, NA, stage:2, dead, 690 days
5.3
DO50803
0 years, female, NA, stage:1, alive, 540 days
5.2
DO23541
0 years, male, NA, stage:2, alive, 930 days
5.2
DO50816
0 years, male, NA, stage:2, alive, 390 days
5.1
DO50802
0 years, male, NA, stage:2, alive, 930 days
5.1
DO45137
0 years, male, NA, stage:1, alive, 1320 days
5.0
DO50814
0 years, male, NA, stage:3, alive, 420 days
5.0
DO45275
0 years, male, NA, stage:3, dead, 10 days
4.9
DO48695
0 years, male, NA, stage:2, alive, 720 days
4.8
DO45227
0 years, female, NA, stage:2, alive, 1020 days
4.8
DO48742
0 years, male, NA, stage:2, alive, 600 days
4.7
DO45237
0 years, male, NA, stage:2, alive, 900 days
4.7
DO45113
0 years, male, NA, stage:3, alive, 1560 days
4.4
DO45299
0 years, female, NA, stage:1, alive, 1440 days
4.3
DO45125
0 years, male, NA, stage:3, alive, 1680 days
4.3
DO50845
0 years, male, NA, stage:3, alive, 210 days
4.3
DO45235
0 years, female, NA, stage:1, alive, 900 days
4.2
DO227801
0 years, female, NA, stage:1, alive, 660 days
4.2
DO48704
0 years, female, NA, stage:3, alive, 750 days
4.1
DO23533
0 years, male, NA, stage:2, alive, 900 days
4.1
DO23519
0 years, male, NA, stage:3, alive, 630 days
4.1
DO45243
0 years, female, NA, stage:3, alive, 930 days
4.1
DO48737
0 years, male, NA, stage:1, alive, 720 days
4.1
DO45143
0 years, male, NA, stage:3, alive, 1290 days
4.0
DO50840
0 years, male, NA, stage:2, alive, 330 days
3.9
DO50776
0 years, male, NA, stage:1, alive, 690 days
3.9
DO23526
0 years, male, NA, stage:3, alive, 1050 days
3.9
DO45239
0 years, male, NA, stage:2, alive, 870 days
3.9
DO45199
0 years, female, NA, stage:2, alive, 1350 days
3.8
DO45161
0 years, male, NA, stage:2, dead, 540 days
3.8
DO45265
0 years, male, NA, stage:3, alive, 1020 days
3.8
DO45191
0 years, female, NA, stage:2, alive, 1200 days
3.6
DO45305
0 years, male, NA, stage:4, alive, 300 days
3.5
DO45099
0 years, male, NA, stage:3, alive, 1590 days
3.5
DO45217
0 years, female, NA, stage:3, dead, 270 days
3.5
DO45173
0 years, male, NA, stage:3, alive, 1170 days
3.5
DO45277
0 years, male, NA, stage:3, alive, 600 days
3.4
DO50813
0 years, male, NA, stage:2, alive, 420 days
3.4
DO48721
0 years, female, NA, stage:1, alive, 900 days
3.4
DO48706
0 years, male, NA, stage:2, alive, 870 days
3.3
DO45215
0 years, male, NA, stage:2, alive, 1170 days
3.3
DO45096
0 years, male, NA, stage:2, dead, 1290 days
3.3
DO45109
0 years, male, NA, stage:2, alive, 1590 days
3.2
DO48679
0 years, male, NA, stage:2, alive, 1200 days
3.2
DO23534
0 years, male, NA, stage:2, alive, 840 days
3.2
DO45229
0 years, male, NA, stage:1, alive, 990 days
3.2
DO50844
0 years, male, NA, stage:4, alive, 300 days
3.2
DO50818
0 years, male, NA, stage:2, alive, 510 days
3.2
DO50859
0 years, male, NA, stage:2, alive, 180 days
3.2
DO50791
0 years, female, NA, stage:1, dead, 480 days
3.0
DO45123
0 years, female, NA, stage:2, dead, 570 days
3.0
DO45175
0 years, male, NA, stage:2, alive, 1140 days
2.9
DO48693
0 years, male, NA, stage:2, alive, 900 days
2.8
DO23516
0 years, male, NA, stage:3, dead, 20 days
2.7
DO45169
0 years, male, NA, stage:3, alive, 1350 days
2.7
DO45269
0 years, male, NA, stage:3, alive, 750 days
2.7
DO23539
0 years, male, NA, stage:1, alive, 1110 days
2.7
DO23525
0 years, male, NA, stage:4, alive, 1050 days
2.6
DO50799
0 years, female, NA, stage:2, alive, 540 days
2.6
DO48723
0 years, male, NA, stage:1, alive, 600 days
2.5
DO45133
0 years, male, NA, stage:3, dead, 660 days
2.5
DO48751
0 years, male, NA, stage:2, dead, 480 days
2.4
DO45163
0 years, male, NA, stage:2, alive, 960 days
2.3
DO45115
0 years, male, NA, stage:2, alive, 840 days
2.2
DO45131
0 years, male, NA, stage:4, dead, 360 days
1.9
DO23546
0 years, male, NA, stage:2, alive, 1050 days
1.9
DO50811
0 years, male, NA, stage:1, alive, 450 days
1.9
DO45117
0 years, female, NA, stage:2, dead, 1110 days
1.9
DO45094
0 years, male, NA, stage:3, alive, 1650 days
1.9
DO45241
0 years, male, NA, stage:1, alive, 1080 days
1.9
DO45093
0 years, male, NA, stage:2, dead, 720 days
1.8
DO45145
0 years, male, NA, stage:3, dead, 60 days
1.8
DO23550
0 years, male, NA, stage:1, alive, 990 days
1.8
DO45171
0 years, male, NA, stage:3, alive, 600 days
1.8
DO23508
0 years, female, NA, stage:2, alive, 390 days
1.7
DO23548
0 years, female, NA, stage:1, alive, 840 days
1.7
DO23517
0 years, male, NA, stage:2, alive, 1200 days
1.7
DO50839
0 years, female, NA, stage:3, alive, 330 days
1.5
DO45105
0 years, male, NA, stage:1, alive, 1680 days
1.4
DO23543
0 years, male, NA, stage:2, alive, 1020 days
1.3
DO23549
0 years, male, NA, stage:3, alive, 990 days
1.3
DO23509
0 years, male, NA, stage:3, dead, 780 days
1.2
DO23538
0 years, male, NA, stage:2, alive, 450 days
1.2
DO50785
0 years, male, NA, stage:4, dead, 90 days
1.1
DO45195
0 years, male, NA, stage:1, alive, 390 days
1.1
DO23513
0 years, male, NA, stage:3, alive, 1200 days
1.0
DO23540
0 years, male, NA, stage:1, alive, 750 days
1.0
DO23544
0 years, male, NA, stage:2, alive, 960 days
0.9
DO48741
0 years, male, NA, stage:3, alive, 240 days
0.9
DO45209
0 years, male, NA, stage:4, alive, 1350 days
0.9
DO48674
0 years, male, NA, stage:2, alive, 1260 days
0.9
DO227643
0 years, male, NA, stage:2, alive, 1260 days
0.8
DO48760
0 years, female, NA, stage:2, alive, 690 days
0.7
DO23512
0 years, male, NA, stage:1, alive, 1260 days
0.7
DO23511
0 years, female, NA, stage:3, dead, 180 days
0.6
DO45149
0 years, female, NA, stage:2, alive, 1260 days
0.6
DO45101
0 years, male, NA, stage:2, alive, 1680 days
0.5
DO23532
0 years, female, NA, stage:1, alive, 960 days
0.3
DO45167
0 years, male, NA, stage:2, dead, 1440 days
0.3
DO45107
0 years, female, NA, stage:2, alive, 1710 days
0.2
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
744
Normal
3.6
554
Normal
3.3
778
Normal
2.9
342
Normal
2.6
738
Normal
2.5
1022
Normal
2.5
746
Normal
2.4
862
Normal
2.4
538
Normal
2.2
283
Tumor
2.2
616
Normal
2.2
344
Normal
2.0
211
Tumor
2.0
642
Normal
1.9
1026
Normal
1.9
742
Normal
1.9
546
Normal
1.7
728
Normal
1.7
698
Normal
1.6
474
Normal
1.5
534
Normal
1.5
452
Normal
1.5
1014
Normal
1.4
462
Normal
1.4
618
Normal
1.3
524
Normal
1.3
824
Normal
1.3
572
Normal
1.3
723
Tumor
1.3
456
Normal
1.2
816
Normal
1.2
756
Normal
1.2
354
Normal
1.2
564
Normal
1.2
864
Normal
1.2
436
Normal
1.1
528
Normal
1.1
466
Normal
1.1
468
Normal
1.1
672
Normal
1.0
866
Normal
1.0
818
Normal
1.0
714
Normal
1.0
526
Normal
0.9
568
Normal
0.9
627
Tumor
0.9
952
Normal
0.9
434
Normal
0.9
716
Normal
0.8
1028
Normal
0.8
311
Tumor
0.8
786
Normal
0.8
464
Normal
0.8
954
Normal
0.8
1044
Normal
0.8
938
Normal
0.7
874
Normal
0.7
868
Normal
0.7
488
Normal
0.7
492
Normal
0.7
1032
Normal
0.7
858
Normal
0.7
722
Normal
0.7
518
Normal
0.7
666
Normal
0.7
686
Normal
0.6
982
Normal
0.6
984
Normal
0.6
922
Normal
0.6
648
Normal
0.6
1016
Normal
0.5
1046
Normal
0.5
514
Normal
0.5
636
Normal
0.5
664
Normal
0.5
671
Tumor
0.5
662
Normal
0.5
491
Tumor
0.5
448
Normal
0.5
663
Tumor
0.4
558
Normal
0.4
574
Normal
0.4
956
Normal
0.4
498
Normal
0.4
472
Normal
0.4
227
Tumor
0.4
981
Tumor
0.4
976
Normal
0.4
665
Tumor
0.4
478
Normal
0.4
412
Normal
0.4
328
Normal
0.4
924
Normal
0.3
926
Normal
0.3
484
Normal
0.3
494
Normal
0.3
352
Normal
0.3
964
Normal
0.3
497
Tumor
0.2
482
Normal
0.2
363
Tumor
0.2
944
Normal
0.2
661
Tumor
0.2
332
Normal
0.2
298
Normal
0.2
943
Tumor
0.2
696
Normal
0.2
823
Tumor
0.2
271
Tumor
0.2
356
Normal
0.1
958
Normal
0.1
966
Normal
0.1
123
Tumor
0.1
284
Normal
0.1
358
Normal
0.1
861
Tumor
0.1
364
Normal
0.1
953
Tumor
0.1
312
Normal
0.1
918
Normal
0.1
968
Normal
0.1
916
Normal
0.0
487
Tumor
0.0
331
Tumor
0.0
1042
Normal
0.0
923
Tumor
0.0
286
Normal
0.0
628
Normal
0.0
228
Normal
0.0
224
Normal
0.0
314
Normal
0.0
446
Normal
0.0
493
Tumor
0.0
536
Normal
-0.1
297
Tumor
-0.1
647
Tumor
-0.1
957
Tumor
-0.1
278
Normal
-0.1
125
Tumor
-0.1
212
Normal
-0.1
925
Tumor
-0.1
483
Tumor
-0.1
277
Tumor
-0.1
852
Normal
-0.1
223
Tumor
-0.2
641
Tumor
-0.2
978
Normal
-0.2
112
Tumor
-0.2
921
Tumor
-0.2
857
Tumor
-0.2
341
Tumor
-0.2
313
Tumor
-0.2
963
Tumor
-0.2
1041
Tumor
-0.2
261
Tumor
-0.2
127
Tumor
-0.2
411
Tumor
-0.2
481
Tumor
-0.2
113
Tumor
-0.3
955
Tumor
-0.3
915
Tumor
-0.3
615
Tumor
-0.3
965
Tumor
-0.3
416
Normal
-0.4
461
Tumor
-0.4
355
Tumor
-0.4
343
Tumor
-0.4
432
Normal
-0.4
975
Tumor
-0.4
415
Tumor
-0.4
721
Tumor
-0.4
557
Tumor
-0.4
563
Tumor
-0.4
267
Tumor
-0.4
741
Tumor
-0.4
553
Tumor
-0.5
257
Tumor
-0.5
327
Tumor
-0.5
357
Tumor
-0.5
1015
Tumor
-0.5
983
Tumor
-0.5
937
Tumor
-0.5
967
Tumor
-0.5
777
Tumor
-0.5
697
Tumor
-0.5
473
Tumor
-0.6
917
Tumor
-0.6
353
Tumor
-0.6
713
Tumor
-0.6
867
Tumor
-0.6
231
Tumor
-0.6
111
Normal
-0.6
128
Normal
-0.6
1045
Tumor
-0.6
268
Normal
-0.7
285
Tumor
-0.7
126
Normal
-0.7
262
Normal
-0.7
272
Normal
-0.7
1025
Tumor
-0.7
232
Normal
-0.7
977
Tumor
-0.7
124
Normal
-0.8
567
Tumor
-0.8
571
Tumor
-0.8
727
Tumor
-0.8
695
Tumor
-0.8
1013
Tumor
-0.8
444
Normal
-0.8
465
Tumor
-0.8
114
Normal
-0.8
785
Tumor
-0.9
951
Tumor
-0.9
814
Normal
-0.9
467
Tumor
-0.9
463
Tumor
-0.9
817
Tumor
-0.9
617
Tumor
-0.9
873
Tumor
-1.0
447
Tumor
-1.0
258
Normal
-1.0
685
Tumor
-1.0
863
Tumor
-1.0
1043
Tumor
-1.1
477
Tumor
-1.1
755
Tumor
-1.1
471
Tumor
-1.1
516
Normal
-1.1
351
Tumor
-1.1
865
Tumor
-1.1
715
Tumor
-1.2
724
Normal
-1.3
815
Tumor
-1.3
851
Tumor
-1.3
533
Tumor
-1.4
455
Tumor
-1.4
435
Tumor
-1.4
1027
Tumor
-1.4
431
Tumor
-1.4
1031
Tumor
-1.5
513
Tumor
-1.5
451
Tumor
-1.5
527
Tumor
-1.6
445
Tumor
-1.6
1021
Tumor
-1.6
743
Tumor
-1.6
433
Tumor
-1.7
537
Tumor
-1.8
443
Tumor
-1.8
737
Tumor
-1.8
573
Tumor
-1.9
545
Tumor
-1.9
535
Tumor
-1.9
517
Tumor
-2.0
515
Tumor
-2.2
813
Tumor
-2.5
745
Tumor
-2.6
525
Tumor
-2.8
523
Tumor
-3.1
635
Tumor
-5.3
911
Tumor
N/A
912
Normal
N/A
913
Tumor
N/A
914
Normal
N/A
361
Tumor
N/A
362
Normal
N/A
365
Tumor
N/A
366
Normal
N/A
367
Tumor
N/A
368
Normal
N/A
131
Tumor
N/A
132
Normal
N/A
375
Tumor
N/A
376
Normal
N/A
135
Tumor
N/A
136
Normal
N/A
137
Tumor
N/A
138
Normal
N/A
141
Tumor
N/A
383
Tumor
N/A
142
Normal
N/A
384
Normal
N/A
385
Tumor
N/A
386
Normal
N/A
145
Tumor
N/A
387
Tumor
N/A
146
Normal
N/A
388
Normal
N/A
147
Tumor
N/A
148
Normal
N/A
391
Tumor
N/A
392
Normal
N/A
393
Tumor
N/A
394
Normal
N/A
395
Tumor
N/A
396
Normal
N/A
161
Tumor
N/A
162
Normal
N/A
171
Tumor
N/A
172
Normal
N/A
185
Tumor
N/A
186
Normal
N/A
187
Tumor
N/A
188
Normal
N/A
191
Tumor
N/A
192
Normal
N/A
195
Tumor
N/A
196
Normal
N/A
877
Tumor
N/A
878
Normal
N/A
881
Tumor
N/A
882
Normal
N/A
883
Tumor
N/A
884
Normal
N/A
413
Tumor
N/A
414
Normal
N/A
421
Tumor
N/A
422
Normal
N/A
423
Tumor
N/A
424
Normal
N/A
425
Tumor
N/A
426
Normal
N/A
427
Tumor
N/A
428
Normal
N/A
213
Tumor
N/A
214
Normal
N/A
217
Tumor
N/A
218
Normal
N/A
221
Tumor
N/A
222
Normal
N/A
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
