We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
RPP38 is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
12.1
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
46.3
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
37.2
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
29.3
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
29.3
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
26.9
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
26.7
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
26.1
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
25.5
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
25.5
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
25.5
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
24.2
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
23.9
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
23.3
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
21.0
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
20.7
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
20.6
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
20.4
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
20.3
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
20.2
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
20.0
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
19.4
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
19.1
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
19.1
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
18.8
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
18.7
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
18.7
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
18.7
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
18.7
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
18.4
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
18.1
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
18.1
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
17.9
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
17.9
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
17.8
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
17.8
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
17.8
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
17.8
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
17.6
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
17.5
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
17.5
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
17.3
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
17.3
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
17.1
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
17.1
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
17.0
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
16.8
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
16.8
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
16.4
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
16.2
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
16.0
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
16.0
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
16.0
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
16.0
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
15.9
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
15.9
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
15.8
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
15.6
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
15.5
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
15.5
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
15.4
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
15.4
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
15.4
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
15.3
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
15.3
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
15.3
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
15.2
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
15.2
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
15.1
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
15.1
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
15.1
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
15.1
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
15.0
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
14.9
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
14.9
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
14.9
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
14.7
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
14.7
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
14.6
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
14.6
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
14.5
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
14.5
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
14.5
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
14.4
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
14.4
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
14.4
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
14.3
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
14.3
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
14.3
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
14.2
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
14.2
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
14.1
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
14.1
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
14.0
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
14.0
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
14.0
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
13.9
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
13.9
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
13.8
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
13.8
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
13.7
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
13.7
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
13.7
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
13.6
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
13.6
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
13.6
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
13.6
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
13.5
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
13.5
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
13.5
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
13.4
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
13.4
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
13.3
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
13.3
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
13.3
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
13.2
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
13.2
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
13.2
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
13.1
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
13.0
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
13.0
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
12.9
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
12.9
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
12.9
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
12.8
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
12.8
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
12.8
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
12.8
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
12.8
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
12.8
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
12.8
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
12.7
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
12.7
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
12.7
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
12.6
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
12.6
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
12.5
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
12.5
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
12.5
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
12.5
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
12.5
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
12.5
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
12.4
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
12.4
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
12.4
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
12.3
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
12.3
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
12.3
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
12.3
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
12.2
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
12.2
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
12.2
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
12.2
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
12.1
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
12.1
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
12.1
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
12.1
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
12.0
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
12.0
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
11.8
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
11.8
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
11.8
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
11.7
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
11.7
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
11.7
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
11.7
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
11.7
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
11.7
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
11.6
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
11.6
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
11.5
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
11.5
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
11.5
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
11.4
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
11.4
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
11.4
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
11.4
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
11.3
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
11.3
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
11.3
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
11.3
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
11.3
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
11.2
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
11.2
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
11.2
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
11.2
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
11.2
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
11.2
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
11.1
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
11.1
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
11.1
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
11.0
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
11.0
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
11.0
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
10.9
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
10.9
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
10.8
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
10.8
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
10.7
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
10.7
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
10.6
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
10.6
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
10.6
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
10.6
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
10.6
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
10.5
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
10.5
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
10.5
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
10.5
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
10.5
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
10.4
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
10.4
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
10.4
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
10.4
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
10.4
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
10.3
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
10.3
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
10.3
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
10.3
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
10.3
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
10.3
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
10.2
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
10.2
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
10.2
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
10.1
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
10.1
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
10.0
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
10.0
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
10.0
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
10.0
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
10.0
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
10.0
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
10.0
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
9.9
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
9.9
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
9.9
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
9.9
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
9.9
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
9.9
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
9.9
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
9.8
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
9.8
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
9.7
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
9.7
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
9.7
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
9.6
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
9.6
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
9.6
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
9.6
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
9.6
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
9.6
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
9.5
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
9.5
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
9.4
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
9.4
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
9.4
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
9.4
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
9.4
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
9.4
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
9.3
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
9.3
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
9.3
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
9.2
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
9.2
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
9.2
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
9.2
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
9.2
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
9.1
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
9.1
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
9.1
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
9.1
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
9.1
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
9.0
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
9.0
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
9.0
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
9.0
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
8.9
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
8.9
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
8.9
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
8.8
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
8.8
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
8.8
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
8.7
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
8.7
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
8.7
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
8.6
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
8.6
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
8.6
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
8.5
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
8.5
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
8.5
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
8.5
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
8.5
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
8.5
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
8.5
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
8.4
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
8.4
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
8.4
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
8.3
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
8.3
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
8.3
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
8.2
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
8.2
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
8.2
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
8.1
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
8.1
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
8.0
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
8.0
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
8.0
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
8.0
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
7.9
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
7.8
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
7.8
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
7.8
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
7.7
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
7.6
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
7.6
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
7.6
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
7.6
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
7.6
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
7.5
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
7.5
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
7.5
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
7.4
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
7.4
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
7.2
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
7.2
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
7.2
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
7.2
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
7.1
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
7.1
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
7.1
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
7.1
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
7.0
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
7.0
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
7.0
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
7.0
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
7.0
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
7.0
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
6.9
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
6.9
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
6.7
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
6.7
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
6.7
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
6.6
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
6.6
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
6.6
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
6.3
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
6.1
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
6.0
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
6.0
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
6.0
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
5.9
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
5.9
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
5.9
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
5.8
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
5.7
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
5.7
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
5.5
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
5.3
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
5.3
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
4.8
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
RPP38 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
11.5
Number of samples
231
Samples
Sample
Description
TPM
DO23513
0 years, male, NA, stage:3, alive, 1200 days
33.1
DO45299
0 years, female, NA, stage:1, alive, 1440 days
28.7
DO23521
0 years, male, NA, stage:3, alive, 1110 days
26.9
DO23534
0 years, male, NA, stage:2, alive, 840 days
25.8
DO45205
0 years, female, NA, stage:2, dead, 90 days
25.7
DO48697
0 years, female, NA, stage:2, dead, 810 days
25.6
DO45145
0 years, male, NA, stage:3, dead, 60 days
25.5
DO48747
0 years, male, NA, stage:3, alive, 540 days
24.2
DO45209
0 years, male, NA, stage:4, alive, 1350 days
24.0
DO50791
0 years, female, NA, stage:1, dead, 480 days
23.5
DO23526
0 years, male, NA, stage:3, alive, 1050 days
21.5
DO50809
0 years, male, NA, stage:3, dead, 720 days
21.1
DO45297
0 years, female, NA, stage:4, dead, 1260 days
21.1
DO48737
0 years, male, NA, stage:1, alive, 720 days
19.7
DO45277
0 years, male, NA, stage:3, alive, 600 days
19.1
DO50802
0 years, male, NA, stage:2, alive, 930 days
18.9
DO50825
0 years, male, NA, stage:2, alive, 390 days
18.8
DO45133
0 years, male, NA, stage:3, dead, 660 days
18.7
DO23509
0 years, male, NA, stage:3, dead, 780 days
18.7
DO48741
0 years, male, NA, stage:3, alive, 240 days
18.7
DO45301
0 years, male, NA, stage:2, dead, 1440 days
18.5
DO45119
0 years, male, NA, stage:3, dead, 510 days
18.3
DO45285
0 years, male, NA, stage:3, alive, 480 days
17.2
DO45305
0 years, male, NA, stage:4, alive, 300 days
16.9
DO48721
0 years, female, NA, stage:1, alive, 900 days
16.4
DO45307
0 years, female, NA, stage:4, dead, 240 days
16.3
DO23508
0 years, female, NA, stage:2, alive, 390 days
16.1
DO45203
0 years, female, NA, stage:2, alive, 1170 days
15.9
DO45121
0 years, male, NA, stage:3, alive, 1530 days
15.9
DO23519
0 years, male, NA, stage:3, alive, 630 days
15.8
DO45171
0 years, male, NA, stage:3, alive, 600 days
15.8
DO48701
0 years, male, NA, stage:2, alive, 780 days
15.6
DO23532
0 years, female, NA, stage:1, alive, 960 days
15.6
DO48746
0 years, male, NA, stage:3, alive, 570 days
15.4
DO45287
0 years, male, NA, stage:1, alive, 390 days
15.4
DO45155
0 years, male, NA, stage:2, alive, 2160 days
15.4
DO23523
0 years, male, NA, stage:3, alive, 1080 days
15.3
DO50811
0 years, male, NA, stage:1, alive, 450 days
15.1
DO45249
0 years, male, NA, stage:1, alive, 630 days
15.0
DO23533
0 years, male, NA, stage:2, alive, 900 days
14.9
DO23516
0 years, male, NA, stage:3, dead, 20 days
14.9
DO45289
0 years, female, NA, stage:3, alive, 360 days
14.9
DO45141
0 years, male, NA, stage:2, alive, 1320 days
14.8
DO48759
0 years, male, NA, stage:3, alive, 720 days
14.3
DO50806
0 years, male, NA, stage:4, alive, 540 days
14.3
DO45097
0 years, male, NA, stage:3, alive, 1620 days
14.2
DO45303
0 years, female, NA, stage:3, alive, 990 days
14.0
DO50845
0 years, male, NA, stage:3, alive, 210 days
14.0
DO45269
0 years, male, NA, stage:3, alive, 750 days
13.9
DO45245
0 years, female, NA, stage:2, dead, 240 days
13.8
DO23543
0 years, male, NA, stage:2, alive, 1020 days
13.5
DO23547
0 years, male, NA, stage:1, alive, 1020 days
13.4
DO45217
0 years, female, NA, stage:3, dead, 270 days
13.4
DO50776
0 years, male, NA, stage:1, alive, 690 days
13.4
DO45175
0 years, male, NA, stage:2, alive, 1140 days
13.3
DO45185
0 years, male, NA, stage:2, alive, 600 days
13.3
DO48751
0 years, male, NA, stage:2, dead, 480 days
13.3
DO48723
0 years, male, NA, stage:1, alive, 600 days
13.2
DO45129
0 years, male, NA, stage:3, alive, 1470 days
13.2
DO50816
0 years, male, NA, stage:2, alive, 390 days
13.0
DO48672
0 years, male, NA, stage:2, alive, 450 days
12.9
DO45103
0 years, male, NA, stage:3, alive, 450 days
12.8
DO45115
0 years, male, NA, stage:2, alive, 840 days
12.8
DO23512
0 years, male, NA, stage:1, alive, 1260 days
12.7
DO23529
0 years, male, NA, stage:4, alive, 930 days
12.7
DO50859
0 years, male, NA, stage:2, alive, 180 days
12.7
DO48695
0 years, male, NA, stage:2, alive, 720 days
12.6
DO48700
0 years, female, NA, stage:2, alive, 810 days
12.6
DO45237
0 years, male, NA, stage:2, alive, 900 days
12.6
DO50819
0 years, female, NA, stage:2, alive, 510 days
12.6
DO50813
0 years, male, NA, stage:2, alive, 420 days
12.5
DO45179
0 years, female, NA, stage:2, alive, 600 days
12.5
DO50829
0 years, male, NA, stage:3, alive, 570 days
12.4
DO48719
0 years, male, NA, stage:2, alive, 690 days
12.3
DO23515
0 years, male, NA, stage:2, alive, 1230 days
12.3
DO48681
0 years, male, NA, stage:2, alive, 900 days
12.3
DO45221
0 years, female, NA, stage:4, dead, 390 days
12.2
DO23510
0 years, female, NA, stage:2, alive, 870 days
12.1
DO50798
0 years, male, NA, stage:3, dead, 30 days
12.1
DO48682
0 years, female, NA, stage:3, dead, 120 days
12.1
DO45099
0 years, male, NA, stage:3, alive, 1590 days
12.1
DO50785
0 years, male, NA, stage:4, dead, 90 days
12.1
DO23536
0 years, male, NA, stage:2, alive, 930 days
12.1
DO45281
0 years, male, NA, stage:4, alive, 750 days
12.0
DO23514
0 years, male, NA, stage:2, alive, 1290 days
11.9
DO45275
0 years, male, NA, stage:3, dead, 10 days
11.9
DO50808
0 years, male, NA, stage:2, alive, 570 days
11.9
DO50817
0 years, male, NA, stage:2, alive, 390 days
11.8
DO45273
0 years, male, NA, stage:2, alive, 480 days
11.8
DO45257
0 years, male, NA, stage:3, alive, 810 days
11.7
DO45195
0 years, male, NA, stage:1, alive, 390 days
11.7
DO45267
0 years, male, NA, stage:3, dead, 570 days
11.4
DO23528
0 years, female, NA, stage:2, alive, 1020 days
11.4
DO45219
0 years, male, NA, stage:2, alive, 1080 days
11.4
DO45157
0 years, male, NA, stage:2, alive, 1980 days
11.4
DO45153
0 years, female, NA, stage:2, alive, 1380 days
11.4
DO23546
0 years, male, NA, stage:2, alive, 1050 days
11.4
DO45211
0 years, male, NA, stage:3, alive, 240 days
11.3
DO45199
0 years, female, NA, stage:2, alive, 1350 days
11.3
DO45263
0 years, male, NA, stage:3, dead, 270 days
11.3
DO23541
0 years, male, NA, stage:2, alive, 930 days
11.2
DO45279
0 years, male, NA, stage:3, alive, 1290 days
11.2
DO23539
0 years, male, NA, stage:1, alive, 1110 days
11.1
DO48757
0 years, female, NA, stage:3, alive, 480 days
11.1
DO50814
0 years, male, NA, stage:3, alive, 420 days
11.0
DO45227
0 years, female, NA, stage:2, alive, 1020 days
11.0
DO48732
0 years, male, NA, stage:3, alive, 630 days
11.0
DO45165
0 years, male, NA, stage:2, alive, 690 days
10.9
DO45123
0 years, female, NA, stage:2, dead, 570 days
10.9
DO45159
0 years, male, NA, stage:3, alive, 1470 days
10.9
DO48677
0 years, male, NA, stage:3, alive, 1140 days
10.9
DO48736
0 years, female, NA, stage:1, alive, 600 days
10.8
DO23525
0 years, male, NA, stage:4, alive, 1050 days
10.7
DO48704
0 years, female, NA, stage:3, alive, 750 days
10.7
DO45127
0 years, male, NA, stage:3, dead, 420 days
10.6
DO45092
0 years, male, NA, stage:4, dead, 1200 days
10.5
DO50855
0 years, male, NA, stage:2, alive, 570 days
10.5
DO45251
0 years, female, NA, stage:2, alive, 900 days
10.4
DO45255
0 years, male, NA, stage:3, alive, 720 days
10.4
DO45131
0 years, male, NA, stage:4, dead, 360 days
10.4
DO48679
0 years, male, NA, stage:2, alive, 1200 days
10.4
DO23535
0 years, male, NA, stage:1, alive, 960 days
10.3
DO48720
0 years, female, NA, stage:2, alive, 570 days
10.2
DO23542
0 years, male, NA, stage:3, alive, 960 days
10.2
DO23548
0 years, female, NA, stage:1, alive, 840 days
10.2
DO45095
0 years, male, NA, stage:2, alive, 1620 days
10.2
DO48717
0 years, male, NA, stage:4, dead, 180 days
10.2
DO48728
0 years, female, NA, stage:2, alive, 150 days
10.2
DO48716
0 years, male, NA, stage:2, alive, 720 days
10.2
DO45117
0 years, female, NA, stage:2, dead, 1110 days
10.1
DO45223
0 years, male, NA, stage:4, alive, 1020 days
10.1
DO50793
0 years, male, NA, stage:4, alive, 540 days
10.1
DO45241
0 years, male, NA, stage:1, alive, 1080 days
10.1
DO45163
0 years, male, NA, stage:2, alive, 960 days
10.0
DO45113
0 years, male, NA, stage:3, alive, 1560 days
10.0
DO23537
0 years, male, NA, stage:2, dead, 900 days
9.9
DO50839
0 years, female, NA, stage:3, alive, 330 days
9.9
DO50844
0 years, male, NA, stage:4, alive, 300 days
9.8
DO50778
0 years, male, NA, stage:4, alive, 630 days
9.7
DO48725
0 years, male, NA, stage:1, alive, 780 days
9.7
DO45169
0 years, male, NA, stage:3, alive, 1350 days
9.6
DO45235
0 years, female, NA, stage:1, alive, 900 days
9.6
DO23524
0 years, female, NA, stage:2, alive, 1050 days
9.6
DO45187
0 years, female, NA, stage:1, alive, 1260 days
9.5
DO45213
0 years, male, NA, stage:1, alive, 1200 days
9.5
DO45243
0 years, female, NA, stage:3, alive, 930 days
9.4
DO45143
0 years, male, NA, stage:3, alive, 1290 days
9.4
DO45096
0 years, male, NA, stage:2, dead, 1290 days
9.4
DO50805
0 years, male, NA, stage:2, alive, 690 days
9.4
DO45259
0 years, male, NA, stage:3, alive, 330 days
9.4
DO45229
0 years, male, NA, stage:1, alive, 990 days
9.3
DO50804
0 years, male, NA, stage:2, alive, 720 days
9.3
DO23549
0 years, male, NA, stage:3, alive, 990 days
9.3
DO23545
0 years, male, NA, stage:2, dead, 570 days
9.3
DO48743
0 years, female, NA, stage:2, alive, 570 days
9.2
DO45201
0 years, male, NA, stage:1, alive, 900 days
9.2
DO45173
0 years, male, NA, stage:3, alive, 1170 days
9.2
DO45139
0 years, male, NA, stage:3, alive, 1320 days
9.2
DO45247
0 years, female, NA, stage:2, alive, 210 days
9.1
DO23544
0 years, male, NA, stage:2, alive, 960 days
9.1
DO50799
0 years, female, NA, stage:2, alive, 540 days
9.1
DO48730
0 years, female, NA, stage:2, alive, 630 days
9.1
DO45135
0 years, male, NA, stage:1, alive, 1410 days
9.0
DO50818
0 years, male, NA, stage:2, alive, 510 days
9.0
DO45161
0 years, male, NA, stage:2, dead, 540 days
8.9
DO48693
0 years, male, NA, stage:2, alive, 900 days
8.9
DO45283
0 years, male, NA, stage:3, alive, 510 days
8.9
DO45183
0 years, female, NA, stage:2, dead, 570 days
8.9
DO45094
0 years, male, NA, stage:3, alive, 1650 days
8.8
DO45107
0 years, female, NA, stage:2, alive, 1710 days
8.8
DO50783
0 years, male, NA, stage:3, alive, 480 days
8.7
DO45149
0 years, female, NA, stage:2, alive, 1260 days
8.7
DO48733
0 years, male, NA, stage:2, alive, 600 days
8.7
DO23540
0 years, male, NA, stage:1, alive, 750 days
8.6
DO45239
0 years, male, NA, stage:2, alive, 870 days
8.6
DO45225
0 years, male, NA, stage:1, alive, 1050 days
8.6
DO45177
0 years, female, NA, stage:3, alive, 1260 days
8.4
DO50800
0 years, male, NA, stage:2, alive, 510 days
8.4
DO50787
0 years, male, NA, stage:3, alive, 480 days
8.4
DO45215
0 years, male, NA, stage:2, alive, 1170 days
8.3
DO48715
0 years, female, NA, stage:2, dead, 690 days
8.3
DO45207
0 years, male, NA, stage:1, alive, 1050 days
8.3
DO227643
0 years, male, NA, stage:2, alive, 1260 days
8.3
DO45191
0 years, female, NA, stage:2, alive, 1200 days
8.3
DO45197
0 years, male, NA, stage:2, alive, 1170 days
8.3
DO45233
0 years, male, NA, stage:3, alive, 900 days
8.3
DO50789
0 years, female, NA, stage:2, alive, 570 days
8.2
DO45181
0 years, female, NA, stage:2, alive, 1200 days
8.2
DO23527
0 years, male, NA, stage:1, alive, 1050 days
8.2
DO48712
0 years, male, NA, stage:2, alive, 810 days
8.0
DO50832
0 years, male, NA, stage:3, alive, 90 days
8.0
DO45189
0 years, female, NA, stage:2, alive, 1200 days
8.0
DO23530
0 years, male, NA, stage:4, dead, 180 days
7.9
DO50803
0 years, female, NA, stage:1, alive, 540 days
7.8
DO227801
0 years, female, NA, stage:1, alive, 660 days
7.8
DO23518
0 years, male, NA, stage:2, alive, 1320 days
7.8
DO45101
0 years, male, NA, stage:2, alive, 1680 days
7.8
DO50815
0 years, male, NA, stage:3, alive, 150 days
7.7
DO45193
0 years, female, NA, stage:4, dead, 120 days
7.7
DO50807
0 years, male, NA, stage:1, alive, 540 days
7.6
DO45265
0 years, male, NA, stage:3, alive, 1020 days
7.5
DO45091
0 years, male, NA, stage:2, dead, 1320 days
7.4
DO23551
0 years, male, NA, stage:3, dead, 150 days
7.4
DO48674
0 years, male, NA, stage:2, alive, 1260 days
7.4
DO50774
0 years, female, NA, stage:2, alive, 720 days
7.4
DO45093
0 years, male, NA, stage:2, dead, 720 days
7.2
DO48727
0 years, female, NA, stage:2, dead, 390 days
7.2
DO45111
0 years, male, NA, stage:2, alive, 1590 days
7.2
DO48760
0 years, female, NA, stage:2, alive, 690 days
7.1
DO50850
0 years, male, NA, stage:3, alive, 720 days
7.1
DO23550
0 years, male, NA, stage:1, alive, 990 days
6.9
DO23531
0 years, female, NA, stage:3, alive, 900 days
6.9
DO50820
0 years, female, NA, stage:3, alive, 510 days
6.8
DO45125
0 years, male, NA, stage:3, alive, 1680 days
6.8
DO48706
0 years, male, NA, stage:2, alive, 870 days
6.7
DO45231
0 years, male, NA, stage:2, alive, 930 days
6.7
DO45109
0 years, male, NA, stage:2, alive, 1590 days
6.7
DO23538
0 years, male, NA, stage:2, alive, 450 days
6.7
DO45261
0 years, male, NA, stage:3, alive, 990 days
6.6
DO48742
0 years, male, NA, stage:2, alive, 600 days
6.4
DO48761
0 years, male, NA, stage:2, alive, 870 days
6.3
DO45137
0 years, male, NA, stage:1, alive, 1320 days
6.2
DO45105
0 years, male, NA, stage:1, alive, 1680 days
5.9
DO50857
0 years, male, NA, stage:2, alive, 210 days
5.9
DO45253
0 years, male, NA, stage:2, alive, 870 days
5.7
DO50822
0 years, male, NA, stage:2, alive, 510 days
5.6
DO50840
0 years, male, NA, stage:2, alive, 330 days
5.5
DO45167
0 years, male, NA, stage:2, dead, 1440 days
5.3
DO23517
0 years, male, NA, stage:2, alive, 1200 days
4.7
DO23552
0 years, female, NA, stage:1, alive, 810 days
4.6
DO23511
0 years, female, NA, stage:3, dead, 180 days
3.6
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
967
Tumor
0.9
331
Tumor
0.9
865
Tumor
0.8
1025
Tumor
0.7
965
Tumor
0.6
497
Tumor
0.6
567
Tumor
0.6
743
Tumor
0.6
533
Tumor
0.6
285
Tumor
0.6
545
Tumor
0.6
423
Tumor
0.5
537
Tumor
0.5
357
Tumor
0.5
513
Tumor
0.5
557
Tumor
0.4
313
Tumor
0.4
367
Tumor
0.4
395
Tumor
0.4
385
Tumor
0.4
724
Normal
0.4
493
Tumor
0.4
443
Tumor
0.4
137
Tumor
0.4
267
Tumor
0.4
411
Tumor
0.4
427
Tumor
0.4
881
Tumor
0.4
227
Tumor
0.3
431
Tumor
0.3
413
Tumor
0.3
861
Tumor
0.3
817
Tumor
0.3
344
Normal
0.3
553
Tumor
0.3
426
Normal
0.3
777
Tumor
0.3
857
Tumor
0.3
131
Tumor
0.3
1031
Tumor
0.3
445
Tumor
0.3
428
Normal
0.3
571
Tumor
0.3
353
Tumor
0.3
1021
Tumor
0.3
815
Tumor
0.3
123
Tumor
0.3
414
Normal
0.3
1027
Tumor
0.3
185
Tumor
0.3
361
Tumor
0.3
354
Normal
0.3
424
Normal
0.3
375
Tumor
0.3
564
Normal
0.2
975
Tumor
0.2
517
Tumor
0.2
823
Tumor
0.2
433
Tumor
0.2
483
Tumor
0.2
425
Tumor
0.2
883
Tumor
0.2
937
Tumor
0.2
685
Tumor
0.2
327
Tumor
0.2
535
Tumor
0.2
388
Normal
0.2
925
Tumor
0.2
737
Tumor
0.2
662
Normal
0.2
141
Tumor
0.2
546
Normal
0.2
386
Normal
0.2
648
Normal
0.2
135
Tumor
0.2
572
Normal
0.2
187
Tumor
0.2
447
Tumor
0.2
467
Tumor
0.2
873
Tumor
0.2
351
Tumor
0.2
568
Normal
0.2
257
Tumor
0.2
297
Tumor
0.2
343
Tumor
0.2
422
Normal
0.2
466
Normal
0.2
421
Tumor
0.2
663
Tumor
0.2
271
Tumor
0.2
957
Tumor
0.2
387
Tumor
0.2
664
Normal
0.2
342
Normal
0.2
912
Normal
0.2
358
Normal
0.1
228
Normal
0.1
1046
Normal
0.1
396
Normal
0.1
672
Normal
0.1
261
Tumor
0.1
786
Normal
0.1
186
Normal
0.1
911
Tumor
0.1
162
Normal
0.1
113
Tumor
0.1
487
Tumor
0.1
953
Tumor
0.1
527
Tumor
0.1
851
Tumor
0.1
232
Normal
0.1
745
Tumor
0.1
213
Tumor
0.1
172
Normal
0.1
671
Tumor
0.1
756
Normal
0.1
212
Normal
0.1
284
Normal
0.1
538
Normal
0.1
814
Normal
0.1
864
Normal
0.1
125
Tumor
0.1
534
Normal
0.1
628
Normal
0.1
223
Tumor
0.1
272
Normal
0.1
1041
Tumor
0.1
665
Tumor
0.1
915
Tumor
0.1
481
Tumor
0.1
574
Normal
0.1
666
Normal
0.0
161
Tumor
0.0
463
Tumor
0.0
661
Tumor
0.0
558
Normal
0.0
882
Normal
0.0
394
Normal
0.0
1045
Tumor
0.0
188
Normal
0.0
465
Tumor
0.0
448
Normal
0.0
697
Tumor
0.0
148
Normal
0.0
722
Normal
0.0
515
Tumor
0.0
471
Tumor
0.0
636
Normal
0.0
713
Tumor
0.0
727
Tumor
0.0
478
Normal
0.0
262
Normal
0.0
921
Tumor
0.0
563
Tumor
0.0
484
Normal
0.0
913
Tumor
0.0
698
Normal
0.0
525
Tumor
0.0
715
Tumor
0.0
136
Normal
0.0
858
Normal
0.0
518
Normal
0.0
714
Normal
0.0
813
Tumor
0.0
436
Normal
0.0
618
Normal
0.0
341
Tumor
0.0
268
Normal
0.0
211
Tumor
0.0
867
Tumor
0.0
482
Normal
0.0
686
Normal
0.0
554
Normal
0.0
862
Normal
0.0
286
Normal
0.0
171
Tumor
0.0
456
Normal
0.0
434
Normal
0.0
627
Tumor
0.0
917
Tumor
0.0
1026
Normal
0.0
355
Tumor
0.0
444
Normal
0.0
356
Normal
0.0
922
Normal
0.0
983
Tumor
0.0
468
Normal
0.0
874
Normal
0.0
716
Normal
0.0
311
Tumor
0.0
923
Tumor
0.0
146
Normal
0.0
283
Tumor
0.0
363
Tumor
0.0
573
Tumor
0.0
523
Tumor
0.0
432
Normal
0.0
491
Tumor
0.0
393
Tumor
0.0
615
Tumor
0.0
452
Normal
-0.1
785
Tumor
-0.1
616
Normal
-0.1
944
Normal
-0.1
966
Normal
-0.1
258
Normal
-0.1
376
Normal
-0.1
1022
Normal
-0.1
494
Normal
-0.1
352
Normal
-0.1
498
Normal
-0.1
926
Normal
-0.1
298
Normal
-0.1
914
Normal
-0.1
755
Tumor
-0.1
1028
Normal
-0.1
1032
Normal
-0.1
778
Normal
-0.1
477
Tumor
-0.1
866
Normal
-0.1
884
Normal
-0.1
741
Tumor
-0.1
278
Normal
-0.1
1044
Normal
-0.1
128
Normal
-0.1
455
Tumor
-0.1
314
Normal
-0.1
721
Tumor
-0.1
536
Normal
-0.1
145
Tumor
-0.1
362
Normal
-0.1
954
Normal
-0.1
364
Normal
-0.1
852
Normal
-0.1
446
Normal
-0.1
224
Normal
-0.1
412
Normal
-0.1
112
Tumor
-0.1
723
Tumor
-0.1
742
Normal
-0.1
514
Normal
-0.1
132
Normal
-0.1
951
Tumor
-0.1
415
Tumor
-0.1
617
Tumor
-0.1
1013
Tumor
-0.1
492
Normal
-0.1
127
Tumor
-0.1
416
Normal
-0.1
472
Normal
-0.1
1016
Normal
-0.1
111
Normal
-0.1
461
Tumor
-0.1
231
Tumor
-0.1
964
Normal
-0.1
696
Normal
-0.1
221
Tumor
-0.1
368
Normal
-0.1
464
Normal
-0.1
332
Normal
-0.1
746
Normal
-0.1
982
Normal
-0.1
526
Normal
-0.1
462
Normal
-0.1
968
Normal
-0.1
142
Normal
-0.1
138
Normal
-0.1
328
Normal
-0.2
963
Tumor
-0.2
147
Tumor
-0.2
435
Tumor
-0.2
868
Normal
-0.2
738
Normal
-0.2
877
Tumor
-0.2
217
Tumor
-0.2
488
Normal
-0.2
635
Tumor
-0.2
938
Normal
-0.2
474
Normal
-0.2
977
Tumor
-0.2
114
Normal
-0.2
924
Normal
-0.2
744
Normal
-0.2
728
Normal
-0.2
955
Tumor
-0.2
391
Tumor
-0.2
1042
Normal
-0.2
816
Normal
-0.2
516
Normal
-0.2
695
Tumor
-0.2
1014
Normal
-0.2
451
Tumor
-0.2
943
Tumor
-0.2
916
Normal
-0.2
981
Tumor
-0.2
1015
Tumor
-0.2
195
Tumor
-0.2
392
Normal
-0.2
277
Tumor
-0.2
642
Normal
-0.2
196
Normal
-0.2
976
Normal
-0.2
863
Tumor
-0.3
528
Normal
-0.3
956
Normal
-0.3
473
Tumor
-0.3
918
Normal
-0.3
1043
Tumor
-0.3
124
Normal
-0.3
824
Normal
-0.3
641
Tumor
-0.3
647
Tumor
-0.3
984
Normal
-0.3
126
Normal
-0.3
312
Normal
-0.3
818
Normal
-0.3
191
Tumor
-0.3
384
Normal
-0.3
214
Normal
-0.3
524
Normal
-0.4
952
Normal
-0.4
978
Normal
-0.4
878
Normal
-0.4
958
Normal
-0.4
383
Tumor
-0.4
192
Normal
-0.5
222
Normal
-0.5
366
Normal
-0.5
365
Tumor
-0.5
218
Normal
-0.6
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
