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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
TADA1 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
11.4
Number of samples
362
Samples
Sample
Description
TPM
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
46.1
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
38.0
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
35.3
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
32.9
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
32.1
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
30.2
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
30.1
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
29.4
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
28.7
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
28.2
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
27.3
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
26.7
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
26.1
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
25.9
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
25.8
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
25.7
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
25.7
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
25.2
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
25.1
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
24.9
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
23.8
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
23.8
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
23.8
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
23.7
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
23.6
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
23.3
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
23.2
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
23.2
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
22.9
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
22.5
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
22.0
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
21.0
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
21.0
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
20.7
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
20.5
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
20.4
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
20.2
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
20.0
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
19.9
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
19.8
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
19.8
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
19.8
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
19.5
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
19.3
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
19.3
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
19.2
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
19.1
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
19.0
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
18.8
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
18.7
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
18.6
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
18.4
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
18.4
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
18.4
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
18.3
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
18.3
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
18.2
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
18.2
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
18.0
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
18.0
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
18.0
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
17.9
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
17.9
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
17.4
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
17.3
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
17.0
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
17.0
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
16.9
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
16.7
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
16.5
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
16.5
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
16.5
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
16.1
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
16.1
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
16.1
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
16.1
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
16.1
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
16.1
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
16.1
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
16.1
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
15.7
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
15.6
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
15.4
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
15.1
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
15.0
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
14.9
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
14.9
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
14.8
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
14.8
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
14.7
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
14.7
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
14.7
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
14.6
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
14.4
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
14.4
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
14.3
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
14.3
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
14.3
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
14.3
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
14.1
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
14.0
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
14.0
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
13.9
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
13.9
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
13.8
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
13.6
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
13.6
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
13.5
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
13.5
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
13.5
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
13.5
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
13.4
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
13.4
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
13.4
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
13.3
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
13.3
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
13.3
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
13.2
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
13.1
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
13.1
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
13.1
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
12.9
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
12.9
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
12.8
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
12.8
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
12.6
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
12.6
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
12.5
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
12.4
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
12.4
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
12.4
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
12.2
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
12.2
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
12.2
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
12.1
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
12.0
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
12.0
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
12.0
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
12.0
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
11.9
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
11.9
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
11.9
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
11.9
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
11.8
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
11.7
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
11.7
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
11.6
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
11.5
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
11.5
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
11.5
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
11.4
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
11.4
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
11.4
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
11.3
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
11.3
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
11.2
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
11.2
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
11.2
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
11.1
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
11.1
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
11.1
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
11.1
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
11.0
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
11.0
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
11.0
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
10.9
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
10.8
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
10.8
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
10.8
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
10.8
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
10.7
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
10.6
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
10.6
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
10.5
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
10.4
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
10.4
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
10.4
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
10.4
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
10.4
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
10.3
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
10.1
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
10.0
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
10.0
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
10.0
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
9.9
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
9.9
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
9.9
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
9.9
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
9.8
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
9.8
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
9.7
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
9.6
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
9.6
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
9.6
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
9.6
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
9.4
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
9.4
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
9.4
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
9.4
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
9.4
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
9.3
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
9.3
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
9.3
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
9.2
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
9.1
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
8.9
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
8.9
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
8.8
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
8.8
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
8.8
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
8.8
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
8.6
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
8.5
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
8.4
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
8.4
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
8.4
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
8.3
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
8.3
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
8.2
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
8.2
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
8.2
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
8.2
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
8.1
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
8.1
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
8.0
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
7.9
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
7.9
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
7.9
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
7.9
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
7.8
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
7.8
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
7.8
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
7.7
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
7.7
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
7.6
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
7.6
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
7.5
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
7.5
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
7.5
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
7.4
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
7.4
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
7.4
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
7.4
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
7.4
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
7.3
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
7.3
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
7.3
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
7.2
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
7.1
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
7.1
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
7.0
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
7.0
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
7.0
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
6.9
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
6.9
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
6.9
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
6.9
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
6.9
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
6.8
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
6.8
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
6.8
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
6.7
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
6.7
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
6.7
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
6.6
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
6.6
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
6.6
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
6.6
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
6.5
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
6.5
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
6.5
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
6.5
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
6.5
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
6.4
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
6.4
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
6.3
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
6.3
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
6.2
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
6.2
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
6.2
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
6.1
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
6.1
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
6.1
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
6.1
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
6.1
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
6.1
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
6.0
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
5.9
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
5.9
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
5.9
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
5.8
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
5.8
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
5.7
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
5.7
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
5.6
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
5.6
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
5.6
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
5.6
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
5.5
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
5.4
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
5.3
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
5.3
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
5.3
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
5.3
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
5.2
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
5.1
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
5.1
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
5.1
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
5.0
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
5.0
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
5.0
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
5.0
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
5.0
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
5.0
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
4.9
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
4.8
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
4.8
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
4.7
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
4.7
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
4.7
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
4.6
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
4.6
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
4.5
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
4.5
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
4.4
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
4.3
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
4.2
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
4.2
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
4.1
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
4.1
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
4.1
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
4.0
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
3.9
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
3.9
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
3.8
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
3.8
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
3.8
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
3.7
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
3.7
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
3.3
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
3.2
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
3.1
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
3.0
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
2.9
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
2.8
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
2.8
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
2.8
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
2.7
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
2.7
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
2.6
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
2.5
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
2.4
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
2.3
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
2.1
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
1.9
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
1.8
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
1.6
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
1.6
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
1.4
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
0.9
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
0.7
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
TADA1 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
14.0
Number of samples
231
Samples
Sample
Description
TPM
DO48746
0 years, male, NA, stage:3, alive, 570 days
68.8
DO45163
0 years, male, NA, stage:2, alive, 960 days
43.0
DO45257
0 years, male, NA, stage:3, alive, 810 days
41.3
DO23528
0 years, female, NA, stage:2, alive, 1020 days
38.9
DO23521
0 years, male, NA, stage:3, alive, 1110 days
38.6
DO50857
0 years, male, NA, stage:2, alive, 210 days
31.7
DO50783
0 years, male, NA, stage:3, alive, 480 days
30.3
DO45123
0 years, female, NA, stage:2, dead, 570 days
30.3
DO45107
0 years, female, NA, stage:2, alive, 1710 days
29.4
DO48704
0 years, female, NA, stage:3, alive, 750 days
28.8
DO45187
0 years, female, NA, stage:1, alive, 1260 days
27.9
DO45207
0 years, male, NA, stage:1, alive, 1050 days
27.4
DO50822
0 years, male, NA, stage:2, alive, 510 days
27.0
DO23533
0 years, male, NA, stage:2, alive, 900 days
26.4
DO50811
0 years, male, NA, stage:1, alive, 450 days
26.1
DO50840
0 years, male, NA, stage:2, alive, 330 days
25.7
DO50817
0 years, male, NA, stage:2, alive, 390 days
25.6
DO23546
0 years, male, NA, stage:2, alive, 1050 days
24.7
DO50793
0 years, male, NA, stage:4, alive, 540 days
24.2
DO23548
0 years, female, NA, stage:1, alive, 840 days
23.6
DO23543
0 years, male, NA, stage:2, alive, 1020 days
23.5
DO23541
0 years, male, NA, stage:2, alive, 930 days
23.5
DO48757
0 years, female, NA, stage:3, alive, 480 days
23.4
DO50820
0 years, female, NA, stage:3, alive, 510 days
23.1
DO45179
0 years, female, NA, stage:2, alive, 600 days
23.0
DO45253
0 years, male, NA, stage:2, alive, 870 days
22.6
DO227801
0 years, female, NA, stage:1, alive, 660 days
22.6
DO45197
0 years, male, NA, stage:2, alive, 1170 days
22.5
DO50804
0 years, male, NA, stage:2, alive, 720 days
21.9
DO45281
0 years, male, NA, stage:4, alive, 750 days
21.7
DO45129
0 years, male, NA, stage:3, alive, 1470 days
21.6
DO48706
0 years, male, NA, stage:2, alive, 870 days
21.6
DO23538
0 years, male, NA, stage:2, alive, 450 days
21.0
DO45227
0 years, female, NA, stage:2, alive, 1020 days
21.0
DO48672
0 years, male, NA, stage:2, alive, 450 days
20.9
DO45177
0 years, female, NA, stage:3, alive, 1260 days
20.7
DO45225
0 years, male, NA, stage:1, alive, 1050 days
20.7
DO45121
0 years, male, NA, stage:3, alive, 1530 days
20.7
DO23524
0 years, female, NA, stage:2, alive, 1050 days
20.3
DO23514
0 years, male, NA, stage:2, alive, 1290 days
20.2
DO50844
0 years, male, NA, stage:4, alive, 300 days
20.2
DO48677
0 years, male, NA, stage:3, alive, 1140 days
19.9
DO48697
0 years, female, NA, stage:2, dead, 810 days
19.8
DO48736
0 years, female, NA, stage:1, alive, 600 days
19.6
DO45183
0 years, female, NA, stage:2, dead, 570 days
19.6
DO45235
0 years, female, NA, stage:1, alive, 900 days
19.5
DO23527
0 years, male, NA, stage:1, alive, 1050 days
19.4
DO45099
0 years, male, NA, stage:3, alive, 1590 days
19.4
DO45103
0 years, male, NA, stage:3, alive, 450 days
19.4
DO45259
0 years, male, NA, stage:3, alive, 330 days
19.3
DO50859
0 years, male, NA, stage:2, alive, 180 days
19.2
DO45096
0 years, male, NA, stage:2, dead, 1290 days
19.0
DO45094
0 years, male, NA, stage:3, alive, 1650 days
18.6
DO48751
0 years, male, NA, stage:2, dead, 480 days
18.2
DO48721
0 years, female, NA, stage:1, alive, 900 days
18.2
DO45203
0 years, female, NA, stage:2, alive, 1170 days
18.2
DO23509
0 years, male, NA, stage:3, dead, 780 days
18.0
DO50809
0 years, male, NA, stage:3, dead, 720 days
17.7
DO45133
0 years, male, NA, stage:3, dead, 660 days
17.7
DO45205
0 years, female, NA, stage:2, dead, 90 days
17.0
DO23512
0 years, male, NA, stage:1, alive, 1260 days
16.9
DO45193
0 years, female, NA, stage:4, dead, 120 days
16.8
DO23542
0 years, male, NA, stage:3, alive, 960 days
16.6
DO45171
0 years, male, NA, stage:3, alive, 600 days
16.6
DO23536
0 years, male, NA, stage:2, alive, 930 days
16.4
DO45159
0 years, male, NA, stage:3, alive, 1470 days
16.3
DO45237
0 years, male, NA, stage:2, alive, 900 days
16.2
DO50855
0 years, male, NA, stage:2, alive, 570 days
16.0
DO50807
0 years, male, NA, stage:1, alive, 540 days
16.0
DO50799
0 years, female, NA, stage:2, alive, 540 days
15.9
DO45243
0 years, female, NA, stage:3, alive, 930 days
15.7
DO45201
0 years, male, NA, stage:1, alive, 900 days
15.4
DO45255
0 years, male, NA, stage:3, alive, 720 days
15.3
DO45247
0 years, female, NA, stage:2, alive, 210 days
15.2
DO45137
0 years, male, NA, stage:1, alive, 1320 days
14.9
DO45267
0 years, male, NA, stage:3, dead, 570 days
14.8
DO45263
0 years, male, NA, stage:3, dead, 270 days
14.7
DO45169
0 years, male, NA, stage:3, alive, 1350 days
14.7
DO45165
0 years, male, NA, stage:2, alive, 690 days
14.7
DO50791
0 years, female, NA, stage:1, dead, 480 days
14.6
DO45251
0 years, female, NA, stage:2, alive, 900 days
14.6
DO45213
0 years, male, NA, stage:1, alive, 1200 days
14.3
DO45221
0 years, female, NA, stage:4, dead, 390 days
14.3
DO48760
0 years, female, NA, stage:2, alive, 690 days
14.2
DO48693
0 years, male, NA, stage:2, alive, 900 days
14.2
DO45265
0 years, male, NA, stage:3, alive, 1020 days
14.2
DO50816
0 years, male, NA, stage:2, alive, 390 days
14.2
DO48741
0 years, male, NA, stage:3, alive, 240 days
14.2
DO45241
0 years, male, NA, stage:1, alive, 1080 days
14.1
DO45275
0 years, male, NA, stage:3, dead, 10 days
14.1
DO48723
0 years, male, NA, stage:1, alive, 600 days
13.9
DO23552
0 years, female, NA, stage:1, alive, 810 days
13.9
DO48737
0 years, male, NA, stage:1, alive, 720 days
13.8
DO45219
0 years, male, NA, stage:2, alive, 1080 days
13.8
DO50789
0 years, female, NA, stage:2, alive, 570 days
13.7
DO48743
0 years, female, NA, stage:2, alive, 570 days
13.7
DO45189
0 years, female, NA, stage:2, alive, 1200 days
13.6
DO45279
0 years, male, NA, stage:3, alive, 1290 days
13.5
DO23539
0 years, male, NA, stage:1, alive, 1110 days
13.5
DO50776
0 years, male, NA, stage:1, alive, 690 days
13.3
DO50850
0 years, male, NA, stage:3, alive, 720 days
13.2
DO45277
0 years, male, NA, stage:3, alive, 600 days
13.2
DO45239
0 years, male, NA, stage:2, alive, 870 days
13.1
DO50802
0 years, male, NA, stage:2, alive, 930 days
13.1
DO45141
0 years, male, NA, stage:2, alive, 1320 days
13.1
DO45105
0 years, male, NA, stage:1, alive, 1680 days
13.0
DO23515
0 years, male, NA, stage:2, alive, 1230 days
12.7
DO48700
0 years, female, NA, stage:2, alive, 810 days
12.6
DO23510
0 years, female, NA, stage:2, alive, 870 days
12.6
DO23508
0 years, female, NA, stage:2, alive, 390 days
12.5
DO45097
0 years, male, NA, stage:3, alive, 1620 days
12.5
DO48695
0 years, male, NA, stage:2, alive, 720 days
12.4
DO45175
0 years, male, NA, stage:2, alive, 1140 days
12.4
DO45185
0 years, male, NA, stage:2, alive, 600 days
12.3
DO45161
0 years, male, NA, stage:2, dead, 540 days
12.3
DO23516
0 years, male, NA, stage:3, dead, 20 days
12.3
DO45113
0 years, male, NA, stage:3, alive, 1560 days
12.2
DO50814
0 years, male, NA, stage:3, alive, 420 days
12.1
DO48701
0 years, male, NA, stage:2, alive, 780 days
12.0
DO23531
0 years, female, NA, stage:3, alive, 900 days
11.9
DO45303
0 years, female, NA, stage:3, alive, 990 days
11.9
DO45095
0 years, male, NA, stage:2, alive, 1620 days
11.9
DO50787
0 years, male, NA, stage:3, alive, 480 days
11.8
DO48759
0 years, male, NA, stage:3, alive, 720 days
11.8
DO50839
0 years, female, NA, stage:3, alive, 330 days
11.7
DO45299
0 years, female, NA, stage:1, alive, 1440 days
11.7
DO45231
0 years, male, NA, stage:2, alive, 930 days
11.7
DO23550
0 years, male, NA, stage:1, alive, 990 days
11.5
DO48717
0 years, male, NA, stage:4, dead, 180 days
11.5
DO45153
0 years, female, NA, stage:2, alive, 1380 days
11.4
DO50825
0 years, male, NA, stage:2, alive, 390 days
11.4
DO45173
0 years, male, NA, stage:3, alive, 1170 days
11.3
DO227643
0 years, male, NA, stage:2, alive, 1260 days
11.3
DO45143
0 years, male, NA, stage:3, alive, 1290 days
11.3
DO45199
0 years, female, NA, stage:2, alive, 1350 days
11.2
DO23545
0 years, male, NA, stage:2, dead, 570 days
11.2
DO45157
0 years, male, NA, stage:2, alive, 1980 days
11.1
DO23534
0 years, male, NA, stage:2, alive, 840 days
11.1
DO45117
0 years, female, NA, stage:2, dead, 1110 days
11.0
DO23518
0 years, male, NA, stage:2, alive, 1320 days
11.0
DO45301
0 years, male, NA, stage:2, dead, 1440 days
10.8
DO45209
0 years, male, NA, stage:4, alive, 1350 days
10.8
DO48681
0 years, male, NA, stage:2, alive, 900 days
10.7
DO48712
0 years, male, NA, stage:2, alive, 810 days
10.6
DO45287
0 years, male, NA, stage:1, alive, 390 days
10.6
DO50798
0 years, male, NA, stage:3, dead, 30 days
10.5
DO23537
0 years, male, NA, stage:2, dead, 900 days
10.5
DO45283
0 years, male, NA, stage:3, alive, 510 days
10.5
DO45127
0 years, male, NA, stage:3, dead, 420 days
10.5
DO23535
0 years, male, NA, stage:1, alive, 960 days
10.4
DO45101
0 years, male, NA, stage:2, alive, 1680 days
10.3
DO23526
0 years, male, NA, stage:3, alive, 1050 days
10.3
DO50818
0 years, male, NA, stage:2, alive, 510 days
10.3
DO48725
0 years, male, NA, stage:1, alive, 780 days
10.3
DO48682
0 years, female, NA, stage:3, dead, 120 days
10.3
DO45273
0 years, male, NA, stage:2, alive, 480 days
10.3
DO45181
0 years, female, NA, stage:2, alive, 1200 days
10.1
DO50805
0 years, male, NA, stage:2, alive, 690 days
10.0
DO50806
0 years, male, NA, stage:4, alive, 540 days
10.0
DO45215
0 years, male, NA, stage:2, alive, 1170 days
9.9
DO45091
0 years, male, NA, stage:2, dead, 1320 days
9.9
DO48761
0 years, male, NA, stage:2, alive, 870 days
9.8
DO50815
0 years, male, NA, stage:3, alive, 150 days
9.8
DO45125
0 years, male, NA, stage:3, alive, 1680 days
9.7
DO23549
0 years, male, NA, stage:3, alive, 990 days
9.7
DO45092
0 years, male, NA, stage:4, dead, 1200 days
9.6
DO45229
0 years, male, NA, stage:1, alive, 990 days
9.6
DO23517
0 years, male, NA, stage:2, alive, 1200 days
9.5
DO23513
0 years, male, NA, stage:3, alive, 1200 days
9.5
DO48733
0 years, male, NA, stage:2, alive, 600 days
9.4
DO45115
0 years, male, NA, stage:2, alive, 840 days
9.4
DO50808
0 years, male, NA, stage:2, alive, 570 days
9.4
DO45191
0 years, female, NA, stage:2, alive, 1200 days
9.4
DO48719
0 years, male, NA, stage:2, alive, 690 days
9.3
DO50845
0 years, male, NA, stage:3, alive, 210 days
9.3
DO45155
0 years, male, NA, stage:2, alive, 2160 days
9.3
DO50785
0 years, male, NA, stage:4, dead, 90 days
9.2
DO45139
0 years, male, NA, stage:3, alive, 1320 days
9.1
DO45305
0 years, male, NA, stage:4, alive, 300 days
8.9
DO45131
0 years, male, NA, stage:4, dead, 360 days
8.8
DO48679
0 years, male, NA, stage:2, alive, 1200 days
8.7
DO50813
0 years, male, NA, stage:2, alive, 420 days
8.6
DO45119
0 years, male, NA, stage:3, dead, 510 days
8.6
DO45233
0 years, male, NA, stage:3, alive, 900 days
8.6
DO45167
0 years, male, NA, stage:2, dead, 1440 days
8.5
DO48716
0 years, male, NA, stage:2, alive, 720 days
8.5
DO50803
0 years, female, NA, stage:1, alive, 540 days
8.5
DO50774
0 years, female, NA, stage:2, alive, 720 days
8.3
DO45111
0 years, male, NA, stage:2, alive, 1590 days
8.2
DO48674
0 years, male, NA, stage:2, alive, 1260 days
8.1
DO45249
0 years, male, NA, stage:1, alive, 630 days
8.1
DO45261
0 years, male, NA, stage:3, alive, 990 days
8.0
DO23529
0 years, male, NA, stage:4, alive, 930 days
8.0
DO48730
0 years, female, NA, stage:2, alive, 630 days
7.9
DO45223
0 years, male, NA, stage:4, alive, 1020 days
7.7
DO45145
0 years, male, NA, stage:3, dead, 60 days
7.7
DO48742
0 years, male, NA, stage:2, alive, 600 days
7.6
DO50829
0 years, male, NA, stage:3, alive, 570 days
7.6
DO48728
0 years, female, NA, stage:2, alive, 150 days
7.3
DO23532
0 years, female, NA, stage:1, alive, 960 days
7.2
DO48720
0 years, female, NA, stage:2, alive, 570 days
7.2
DO45217
0 years, female, NA, stage:3, dead, 270 days
7.0
DO48727
0 years, female, NA, stage:2, dead, 390 days
6.9
DO45093
0 years, male, NA, stage:2, dead, 720 days
6.6
DO45307
0 years, female, NA, stage:4, dead, 240 days
6.5
DO45297
0 years, female, NA, stage:4, dead, 1260 days
6.4
DO23519
0 years, male, NA, stage:3, alive, 630 days
6.4
DO23525
0 years, male, NA, stage:4, alive, 1050 days
6.3
DO23540
0 years, male, NA, stage:1, alive, 750 days
6.2
DO48732
0 years, male, NA, stage:3, alive, 630 days
5.9
DO45289
0 years, female, NA, stage:3, alive, 360 days
5.8
DO45195
0 years, male, NA, stage:1, alive, 390 days
5.5
DO23547
0 years, male, NA, stage:1, alive, 1020 days
5.5
DO50800
0 years, male, NA, stage:2, alive, 510 days
5.4
DO45135
0 years, male, NA, stage:1, alive, 1410 days
5.4
DO23511
0 years, female, NA, stage:3, dead, 180 days
5.3
DO45269
0 years, male, NA, stage:3, alive, 750 days
5.2
DO50778
0 years, male, NA, stage:4, alive, 630 days
5.1
DO48715
0 years, female, NA, stage:2, dead, 690 days
5.1
DO45109
0 years, male, NA, stage:2, alive, 1590 days
4.9
DO50832
0 years, male, NA, stage:3, alive, 90 days
4.8
DO45211
0 years, male, NA, stage:3, alive, 240 days
4.7
DO23523
0 years, male, NA, stage:3, alive, 1080 days
4.6
DO50819
0 years, female, NA, stage:2, alive, 510 days
4.4
DO45149
0 years, female, NA, stage:2, alive, 1260 days
4.4
DO23544
0 years, male, NA, stage:2, alive, 960 days
4.2
DO45285
0 years, male, NA, stage:3, alive, 480 days
4.0
DO23530
0 years, male, NA, stage:4, dead, 180 days
4.0
DO23551
0 years, male, NA, stage:3, dead, 150 days
3.6
DO48747
0 years, male, NA, stage:3, alive, 540 days
3.4
DO45245
0 years, female, NA, stage:2, dead, 240 days
3.3
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
743
Tumor
1.1
432
Normal
1.1
446
Normal
1.1
863
Tumor
0.9
957
Tumor
0.9
573
Tumor
0.9
862
Normal
0.9
921
Tumor
0.7
533
Tumor
0.7
965
Tumor
0.7
357
Tumor
0.7
923
Tumor
0.7
571
Tumor
0.7
557
Tumor
0.7
433
Tumor
0.7
213
Tumor
0.7
1031
Tumor
0.6
724
Normal
0.6
975
Tumor
0.6
391
Tumor
0.5
431
Tumor
0.5
427
Tumor
0.5
445
Tumor
0.5
285
Tumor
0.5
271
Tumor
0.5
444
Normal
0.5
393
Tumor
0.5
824
Normal
0.5
425
Tumor
0.5
967
Tumor
0.5
915
Tumor
0.5
221
Tumor
0.5
131
Tumor
0.4
911
Tumor
0.4
882
Normal
0.4
394
Normal
0.4
963
Tumor
0.4
866
Normal
0.4
443
Tumor
0.4
211
Tumor
0.4
567
Tumor
0.4
434
Normal
0.4
1021
Tumor
0.4
283
Tumor
0.4
737
Tumor
0.4
392
Normal
0.4
436
Normal
0.4
563
Tumor
0.4
386
Normal
0.4
917
Tumor
0.4
741
Tumor
0.4
777
Tumor
0.4
912
Normal
0.4
564
Normal
0.4
944
Normal
0.4
396
Normal
0.3
227
Tumor
0.3
1025
Tumor
0.3
873
Tumor
0.3
925
Tumor
0.3
857
Tumor
0.3
435
Tumor
0.3
161
Tumor
0.3
938
Normal
0.3
878
Normal
0.3
497
Tumor
0.3
874
Normal
0.3
527
Tumor
0.3
864
Normal
0.3
171
Tumor
0.3
742
Normal
0.3
816
Normal
0.2
387
Tumor
0.2
884
Normal
0.2
258
Normal
0.2
1041
Tumor
0.2
553
Tumor
0.2
388
Normal
0.2
572
Normal
0.2
481
Tumor
0.2
217
Tumor
0.2
141
Tumor
0.2
341
Tumor
0.2
268
Normal
0.2
267
Tumor
0.2
185
Tumor
0.2
491
Tumor
0.2
615
Tumor
0.2
191
Tumor
0.2
858
Normal
0.2
493
Tumor
0.2
483
Tumor
0.1
413
Tumor
0.1
187
Tumor
0.1
868
Normal
0.1
635
Tumor
0.1
818
Normal
0.1
147
Tumor
0.1
881
Tumor
0.1
914
Normal
0.1
744
Normal
0.1
647
Tumor
0.1
663
Tumor
0.1
814
Normal
0.1
641
Tumor
0.1
954
Normal
0.1
195
Tumor
0.1
817
Tumor
0.1
727
Tumor
0.1
343
Tumor
0.1
951
Tumor
0.1
813
Tumor
0.1
212
Normal
0.1
883
Tumor
0.1
723
Tumor
0.1
545
Tumor
0.1
977
Tumor
0.1
492
Normal
0.0
344
Normal
0.0
865
Tumor
0.0
228
Normal
0.0
851
Tumor
0.0
913
Tumor
0.0
498
Normal
0.0
823
Tumor
0.0
447
Tumor
0.0
484
Normal
0.0
262
Normal
0.0
487
Tumor
0.0
534
Normal
0.0
261
Tumor
0.0
395
Tumor
0.0
546
Normal
0.0
272
Normal
0.0
353
Tumor
0.0
218
Normal
0.0
192
Normal
0.0
351
Tumor
0.0
352
Normal
0.0
877
Tumor
0.0
648
Normal
0.0
1022
Normal
0.0
196
Normal
0.0
342
Normal
0.0
138
Normal
0.0
778
Normal
0.0
617
Tumor
0.0
755
Tumor
-0.1
257
Tumor
-0.1
852
Normal
-0.1
222
Normal
-0.1
1032
Normal
-0.1
728
Normal
-0.1
148
Normal
-0.1
661
Tumor
-0.1
423
Tumor
-0.1
528
Normal
-0.1
666
Normal
-0.1
746
Normal
-0.1
785
Tumor
-0.1
142
Normal
-0.1
924
Normal
-0.1
756
Normal
-0.1
231
Tumor
-0.1
738
Normal
-0.1
223
Tumor
-0.1
354
Normal
-0.1
188
Normal
-0.1
554
Normal
-0.1
1026
Normal
-0.1
462
Normal
-0.1
1027
Tumor
-0.1
132
Normal
-0.1
286
Normal
-0.1
224
Normal
-0.1
477
Tumor
-0.1
488
Normal
-0.1
461
Tumor
-0.1
815
Tumor
-0.1
953
Tumor
-0.1
1043
Tumor
-0.2
574
Normal
-0.2
361
Tumor
-0.2
494
Normal
-0.2
1045
Tumor
-0.2
558
Normal
-0.2
943
Tumor
-0.2
358
Normal
-0.2
537
Tumor
-0.2
284
Normal
-0.2
665
Tumor
-0.2
956
Normal
-0.2
671
Tumor
-0.2
698
Normal
-0.2
662
Normal
-0.2
162
Normal
-0.2
146
Normal
-0.2
214
Normal
-0.2
172
Normal
-0.2
385
Tumor
-0.2
966
Normal
-0.2
1042
Normal
-0.2
232
Normal
-0.2
926
Normal
-0.2
145
Tumor
-0.2
672
Normal
-0.2
375
Tumor
-0.2
1046
Normal
-0.2
568
Normal
-0.3
135
Tumor
-0.3
664
Normal
-0.3
955
Tumor
-0.3
922
Normal
-0.3
473
Tumor
-0.3
916
Normal
-0.3
918
Normal
-0.3
471
Tumor
-0.3
137
Tumor
-0.3
983
Tumor
-0.3
136
Normal
-0.3
482
Normal
-0.3
472
Normal
-0.3
538
Normal
-0.3
448
Normal
-0.3
186
Normal
-0.3
1028
Normal
-0.3
968
Normal
-0.3
1016
Normal
-0.3
937
Tumor
-0.3
365
Tumor
-0.4
426
Normal
-0.4
964
Normal
-0.4
745
Tumor
-0.4
474
Normal
-0.4
628
Normal
-0.4
1013
Tumor
-0.4
1044
Normal
-0.4
367
Tumor
-0.4
421
Tumor
-0.4
861
Tumor
-0.4
786
Normal
-0.4
478
Normal
-0.5
642
Normal
-0.5
618
Normal
-0.5
958
Normal
-0.5
1015
Tumor
-0.5
535
Tumor
-0.5
636
Normal
-0.5
984
Normal
-0.5
627
Tumor
-0.5
976
Normal
-0.6
952
Normal
-0.6
366
Normal
-0.6
383
Tumor
-0.6
616
Normal
-0.6
697
Tumor
-0.6
362
Normal
-0.6
428
Normal
-0.7
536
Normal
-0.7
414
Normal
-0.7
982
Normal
-0.7
422
Normal
-0.7
1014
Normal
-0.7
981
Tumor
-0.8
376
Normal
-0.8
978
Normal
-0.8
424
Normal
-0.8
867
Tumor
-0.9
368
Normal
-0.9
384
Normal
-0.9
111
Normal
N/A
112
Tumor
N/A
113
Tumor
N/A
355
Tumor
N/A
114
Normal
N/A
356
Normal
N/A
363
Tumor
N/A
364
Normal
N/A
123
Tumor
N/A
124
Normal
N/A
125
Tumor
N/A
126
Normal
N/A
127
Tumor
N/A
128
Normal
N/A
277
Tumor
N/A
278
Normal
N/A
713
Tumor
N/A
714
Normal
N/A
715
Tumor
N/A
716
Normal
N/A
721
Tumor
N/A
722
Normal
N/A
297
Tumor
N/A
298
Normal
N/A
513
Tumor
N/A
514
Normal
N/A
515
Tumor
N/A
516
Normal
N/A
517
Tumor
N/A
518
Normal
N/A
523
Tumor
N/A
524
Normal
N/A
525
Tumor
N/A
526
Normal
N/A
411
Tumor
N/A
412
Normal
N/A
415
Tumor
N/A
416
Normal
N/A
311
Tumor
N/A
312
Normal
N/A
313
Tumor
N/A
314
Normal
N/A
685
Tumor
N/A
686
Normal
N/A
327
Tumor
N/A
328
Normal
N/A
451
Tumor
N/A
331
Tumor
N/A
452
Normal
N/A
332
Normal
N/A
695
Tumor
N/A
696
Normal
N/A
455
Tumor
N/A
456
Normal
N/A
463
Tumor
N/A
464
Normal
N/A
465
Tumor
N/A
466
Normal
N/A
467
Tumor
N/A
468
Normal
N/A
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
