MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:21.1 nTPM
HPA Brain:71.7 nTPM
GTEx:21.1 nTPM
FANTOM5:68.7 Scaled Tags Per Million
Pig:90.4 nTPM
Mouse:106.1 nTPM
Allen mouse:15.8 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 71.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 51.9
2411 Female, age 72, unknown 62.1
1827 Male, age 72, unknown 59.4
2586 Male, age 75, left hemisphere 55.9
2666 Male, age 74, left hemisphere 55.9
2219 Male, age 76, both hemispheres 51.6
2019 Male, age 18, unknown 51.1
1870 Female, age 42, unknown 50.8
1833 Male, age 53, unknown 44.8
2828 Female, age 72, unknown 44.8
1830 Male, age 51, unknown 42.8
Dorsal raphe nucleus
nTPM: 60.2
2298 Female, age 72, unknown 68.6
2047 Male, age 72, unknown 65.3
1828 Male, age 53, unknown 64.1
2750 Male, age 76, both hemispheres 56.8
2016 Female, age 72, unknown 46.5
Inferior colliculus
nTPM: 44.5
2097 Female, age 72, unknown 53.7
1890 Male, age 53, unknown 42.7
1848 Female, age 42, unknown 42.3
2849 Male, age 72, unknown 39.4
Median raphe nucleus
nTPM: 60.5
2220 Male, age 76, midline 60.5
Periaquaductal grey, anterior
nTPM: 64.5
1947 Male, age 18, unknown 74.8
2502 Female, age 75, unknown 61.6
1795 Male, age 51, unknown 57.3
Periaquaductal grey, dorsal
nTPM: 48.8
1840 Male, age 53, unknown 56.7
2464 Female, age 72, unknown 48.3
1831 Male, age 72, unknown 45.4
2850 Male, age 76, both hemispheres 45.0
Periaquaductal grey, lateral
nTPM: 39.7
2053 Male, age 18, unknown 40.1
2272 Male, age 74, both hemispheres 40.1
2140 Male, age 76, both hemispheres 38.8
Pretectal area
nTPM: 49.6
1816 Male, age 51, unknown 60.0
2007 Male, age 72, unknown 58.3
1944 Female, age 72, unknown 56.7
2224 Female, age 72, unknown 55.4
1817 Female, age 42, unknown 54.1
1815 Male, age 53, unknown 50.6
2825 Male, age 18, unknown 46.0
2667 Female, age 75, unknown 44.4
2273 Male, age 74, both hemispheres 43.4
2407 Male, age 75, both hemispheres 42.7
2316 Male, age 76, right hemisphere 34.2
Red nucleus
nTPM: 44.7
1821 Female, age 72, unknown 59.1
2584 Male, age 75, left hemisphere 51.4
2725 Female, age 75, unknown 50.7
1954 Female, age 42, unknown 46.2
2588 Male, age 74, left hemisphere 44.0
2503 Female, age 72, unknown 43.1
1904 Male, age 53, unknown 41.1
1865 Male, age 51, unknown 40.8
2769 Male, age 72, unknown 40.7
2227 Male, age 72, unknown 40.6
2785 Male, age 18, unknown 40.0
2823 Male, age 76, right hemisphere 38.3
Substantia nigra
nTPM: 71.7
2241 Male, age 72, unknown 105.4
1916 Female, age 42, unknown 105.2
1851 Male, age 51, unknown 84.0
1941 Male, age 53, unknown 75.3
2409 Female, age 72, unknown 68.5
1889 Female, age 72, unknown 62.1
2699 Male, age 18, unknown 60.5
2665 Male, age 74, both hemispheres 53.8
2583 Male, age 75, right hemisphere 51.3
2590 Female, age 75, unknown 51.1
Superior colliculus
nTPM: 46.5
2668 Female, age 75, unknown 62.0
2664 Male, age 75, both hemispheres 53.2
2261 Male, age 18, unknown 52.7
2087 Female, age 72, unknown 49.9
1796 Male, age 53, unknown 49.7
2587 Male, age 74, left hemisphere 46.0
1839 Male, age 51, unknown 45.3
1895 Male, age 76, right hemisphere 42.2
1913 Female, age 42, unknown 35.3
1995 Male, age 72, unknown 28.2
Ventral tegmental area
nTPM: 61.6
1915 Female, age 42, unknown 71.6
2410 Female, age 72, unknown 71.6
2218 Male, age 76, both hemispheres 65.5
1942 Male, age 51, unknown 60.3
2021 Male, age 53, unknown 51.2
2223 Female, age 72, unknown 49.6

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 21.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 21.1
Samples: 139

Max nTPM: 61.4
Min nTPM: 9.0
Std nTPM: 9.2
Median nTPM: 18.2
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 61.4
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 59.0
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 49.0
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 44.4
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 40.8
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 39.3
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 38.9
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 38.3
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 37.4
GTEX-13SLX-0011-R2b-SM-5S2VP 50-59 years, female 35.5
GTEX-13G51-0011-R2b-SM-5LZXS 60-69 years, male 34.6
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 68.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 68.7
FF:10158-103A5 76 years, female 68.7

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 90.4
Pig sample Sample description nTPM
Substantia nigra
nTPM: 90.4
Samples: 4

Max nTPM: 126.7
Min nTPM: 34.6
Sample A Female 126.7
Sample B Female 75.9
Sample C Male 124.2
Sample D Male 34.6
Midbrain
nTPM: 76.6
Samples: 4

Max nTPM: 101.2
Min nTPM: 43.8
Sample A Female 43.8
Sample B Female 86.8
Sample C Male 101.2
Sample D Male 74.7
Periaqueductal gray
nTPM: 62.5
Samples: 3

Max nTPM: 74.6
Min nTPM: 52.0
Sample B Female 60.9
Sample C Male 74.6
Sample D Male 52.0
Superior colliculi
nTPM: 67.7
Samples: 4

Max nTPM: 83.3
Min nTPM: 49.5
Sample A Female 75.5
Sample B Female 49.5
Sample C Male 83.3
Sample D Male 62.5

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 106.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 106.1
Samples: 4

Max nTPM: 113.8
Min nTPM: 91.7
Sample A Male 91.7
Sample B Male 109.5
Sample C Female 113.8
Sample D Female 109.5

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 15.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 15.8
69735831 Antisense, RP_050503_03_F05, Mouse strain C57BL/6J (56 days, male) 15.8

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