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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
ATP5F1A is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
229.7
Number of samples
362
Samples
Sample
Description
TPM
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
800.7
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
651.7
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
646.4
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
587.2
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
587.1
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
557.9
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
542.1
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
535.1
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
519.6
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
515.3
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
506.4
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
491.0
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
483.9
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
474.4
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
450.3
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
450.2
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
447.3
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
439.3
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
420.2
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
415.9
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
414.3
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
412.7
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
408.8
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
405.3
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
403.5
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
389.7
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
385.5
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
381.8
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
376.3
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
373.8
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
369.4
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
362.6
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
358.3
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
356.3
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
355.0
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
354.4
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
353.6
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
350.7
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
347.7
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
346.4
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
345.1
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
342.8
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
341.6
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
341.0
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
338.7
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
338.1
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
336.8
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
334.6
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
334.0
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
330.2
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
327.9
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
325.6
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
322.9
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
318.2
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
316.2
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
312.6
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
312.0
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
310.1
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
309.8
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
307.6
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
306.4
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
304.8
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
302.0
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
301.1
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
300.5
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
297.2
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
295.9
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
295.3
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
295.1
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
294.6
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
293.9
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
291.5
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
290.6
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
290.5
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
289.6
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
288.0
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
286.8
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
284.2
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
282.2
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
278.9
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
276.8
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
276.6
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
276.5
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
275.6
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
274.9
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
274.8
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
273.6
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
272.4
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
272.1
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
271.9
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
269.8
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
269.6
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
269.6
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
267.4
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
266.2
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
265.5
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
265.5
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
264.7
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
264.7
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
264.7
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
264.1
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
263.6
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
263.4
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
261.8
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
259.3
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
258.4
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
256.6
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
256.6
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
256.2
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
253.1
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
252.8
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
252.7
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
252.0
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
251.8
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
251.6
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
251.4
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
250.7
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
249.1
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
248.2
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
247.5
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
247.3
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
246.5
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
246.4
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
245.8
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
245.0
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
244.9
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
243.0
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
242.6
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
242.3
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
241.7
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
241.5
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
241.0
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
239.2
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
239.0
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
238.9
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
238.5
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
238.4
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
238.1
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
237.1
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
236.3
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
236.2
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
235.8
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
235.7
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
235.2
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
234.6
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
232.9
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
231.5
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
231.1
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
230.9
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
229.8
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
229.5
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
228.8
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
228.5
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
228.3
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
228.3
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
227.7
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
227.1
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
226.7
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
225.8
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
225.6
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
225.3
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
224.8
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
224.4
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
224.4
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
224.3
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
223.5
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
222.6
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
222.6
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
222.6
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
221.4
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
220.9
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
220.6
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
220.3
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
220.3
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
220.0
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
219.0
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
218.4
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
217.3
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
216.7
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
216.6
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
216.5
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
214.5
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
213.2
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
213.1
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
213.0
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
212.9
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
211.3
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
210.8
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
210.6
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
209.3
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
209.0
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
208.8
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
208.4
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
207.9
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
207.7
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
207.5
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
207.5
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
206.6
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
206.4
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
206.3
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
204.9
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
204.6
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
203.4
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
202.0
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
201.5
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
200.3
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
199.9
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
199.6
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
199.0
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
198.3
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
197.9
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
197.8
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
196.9
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
196.6
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
196.5
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
196.5
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
196.3
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
194.9
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
194.0
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
193.8
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
193.7
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
193.2
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
192.4
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
191.7
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
191.7
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
191.6
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
191.5
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
189.5
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
189.2
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
186.7
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
186.3
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
186.0
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
185.8
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
185.5
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
184.4
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
184.1
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
184.0
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
183.3
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
183.0
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
182.9
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
182.8
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
181.9
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
181.8
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
180.1
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
179.9
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
179.6
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
179.5
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
178.8
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
178.4
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
177.9
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
176.5
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
176.4
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
175.9
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
175.8
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
175.3
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
175.3
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
175.1
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
175.0
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
174.5
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
171.3
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
171.2
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
170.4
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
168.5
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
167.1
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
166.2
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
164.5
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
164.4
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
163.5
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
162.2
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
162.2
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
161.8
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
161.8
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
161.3
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
160.6
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
159.4
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
159.3
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
158.9
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
158.2
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
157.4
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
156.6
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
156.4
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
155.4
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
155.1
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
154.4
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
153.9
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
153.7
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
153.7
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
153.2
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
152.3
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
151.8
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
151.7
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
150.4
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
150.3
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
150.3
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
149.5
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
149.0
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
146.9
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
146.8
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
145.9
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
145.8
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
144.6
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
144.5
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
140.5
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
138.1
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
137.4
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
131.3
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
131.2
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
129.8
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
129.7
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
129.5
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
128.7
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
128.2
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
127.4
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
127.2
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
127.0
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
127.0
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
126.8
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
125.7
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
125.7
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
125.1
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
124.6
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
123.2
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
123.0
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
122.1
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
120.9
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
120.7
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
115.7
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
115.3
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
114.9
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
114.2
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
113.9
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
113.7
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
112.9
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
111.4
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
111.2
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
105.2
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
105.2
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
104.8
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
104.3
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
102.8
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
91.6
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
90.9
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
89.8
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
87.7
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
87.0
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
86.1
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
85.9
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
83.9
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
83.3
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
81.9
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
79.9
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
74.1
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
73.7
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
72.8
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
72.5
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
71.7
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
71.5
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
68.3
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
62.3
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
61.0
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
58.2
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
Survival analysis data not available.
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
627
Tumor
1.8
227
Tumor
0.7
713
Tumor
0.7
571
Tumor
0.6
513
Tumor
0.6
452
Normal
0.6
1043
Tumor
0.6
534
Normal
0.6
922
Normal
0.6
882
Normal
0.6
925
Tumor
0.6
636
Normal
0.5
982
Normal
0.5
722
Normal
0.5
756
Normal
0.5
912
Normal
0.5
328
Normal
0.5
172
Normal
0.5
314
Normal
0.5
232
Normal
0.5
488
Normal
0.5
745
Tumor
0.5
428
Normal
0.5
436
Normal
0.5
824
Normal
0.5
162
Normal
0.5
786
Normal
0.5
944
Normal
0.5
424
Normal
0.5
482
Normal
0.4
714
Normal
0.4
222
Normal
0.4
615
Tumor
0.4
465
Tumor
0.4
344
Normal
0.4
868
Normal
0.4
278
Normal
0.4
1014
Normal
0.4
1045
Tumor
0.4
515
Tumor
0.4
472
Normal
0.4
818
Normal
0.4
964
Normal
0.4
858
Normal
0.4
698
Normal
0.4
448
Normal
0.4
414
Normal
0.4
394
Normal
0.4
648
Normal
0.4
128
Normal
0.4
358
Normal
0.4
738
Normal
0.4
938
Normal
0.4
926
Normal
0.4
978
Normal
0.4
864
Normal
0.4
376
Normal
0.4
361
Tumor
0.4
564
Normal
0.4
1032
Normal
0.4
618
Normal
0.4
423
Tumor
0.4
298
Normal
0.4
258
Normal
0.4
196
Normal
0.4
546
Normal
0.4
426
Normal
0.4
746
Normal
0.4
365
Tumor
0.4
356
Normal
0.4
462
Normal
0.4
1027
Tumor
0.4
514
Normal
0.4
388
Normal
0.4
862
Normal
0.4
412
Normal
0.4
1026
Normal
0.4
484
Normal
0.4
342
Normal
0.4
286
Normal
0.4
616
Normal
0.3
464
Normal
0.3
228
Normal
0.3
1025
Tumor
0.3
914
Normal
0.3
976
Normal
0.3
1046
Normal
0.3
984
Normal
0.3
518
Normal
0.3
132
Normal
0.3
364
Normal
0.3
1042
Normal
0.3
526
Normal
0.3
446
Normal
0.3
723
Tumor
0.3
924
Normal
0.3
568
Normal
0.3
494
Normal
0.3
628
Normal
0.3
218
Normal
0.3
742
Normal
0.3
728
Normal
0.3
958
Normal
0.3
823
Tumor
0.3
332
Normal
0.3
466
Normal
0.3
138
Normal
0.3
416
Normal
0.3
148
Normal
0.3
664
Normal
0.3
1022
Normal
0.3
392
Normal
0.3
538
Normal
0.3
186
Normal
0.3
528
Normal
0.3
967
Tumor
0.3
366
Normal
0.3
422
Normal
0.3
214
Normal
0.3
954
Normal
0.3
1016
Normal
0.3
468
Normal
0.3
852
Normal
0.3
354
Normal
0.2
923
Tumor
0.2
111
Normal
0.2
874
Normal
0.2
981
Tumor
0.2
136
Normal
0.2
572
Normal
0.2
666
Normal
0.2
432
Normal
0.2
918
Normal
0.2
114
Normal
0.2
884
Normal
0.2
866
Normal
0.2
257
Tumor
0.2
696
Normal
0.2
487
Tumor
0.2
352
Normal
0.2
272
Normal
0.2
145
Tumor
0.2
1044
Normal
0.2
916
Normal
0.2
686
Normal
0.2
716
Normal
0.2
362
Normal
0.2
284
Normal
0.2
956
Normal
0.2
878
Normal
0.2
474
Normal
0.2
968
Normal
0.2
642
Normal
0.2
212
Normal
0.2
524
Normal
0.2
1028
Normal
0.2
662
Normal
0.2
955
Tumor
0.2
262
Normal
0.2
368
Normal
0.2
558
Normal
0.2
554
Normal
0.2
635
Tumor
0.1
363
Tumor
0.1
396
Normal
0.1
456
Normal
0.1
142
Normal
0.1
312
Normal
0.1
785
Tumor
0.1
481
Tumor
0.1
393
Tumor
0.1
816
Normal
0.1
873
Tumor
0.1
755
Tumor
0.1
386
Normal
0.1
1041
Tumor
0.1
537
Tumor
0.1
146
Normal
0.1
478
Normal
0.1
516
Normal
0.1
867
Tumor
0.1
727
Tumor
0.1
966
Normal
0.1
224
Normal
0.1
915
Tumor
0.1
952
Normal
0.1
863
Tumor
0.1
778
Normal
0.1
672
Normal
0.1
126
Normal
0.1
744
Normal
0.1
1013
Tumor
0.1
451
Tumor
0.1
574
Normal
0.1
695
Tumor
0.1
491
Tumor
0.0
353
Tumor
0.0
113
Tumor
0.0
327
Tumor
0.0
268
Normal
0.0
461
Tumor
0.0
517
Tumor
0.0
911
Tumor
0.0
411
Tumor
0.0
443
Tumor
0.0
415
Tumor
0.0
384
Normal
0.0
741
Tumor
0.0
124
Normal
0.0
434
Normal
0.0
953
Tumor
0.0
483
Tumor
0.0
188
Normal
0.0
563
Tumor
-0.1
498
Normal
-0.1
137
Tumor
-0.1
444
Normal
-0.1
492
Normal
-0.1
777
Tumor
-0.1
937
Tumor
-0.1
477
Tumor
-0.1
427
Tumor
-0.1
1031
Tumor
-0.1
697
Tumor
-0.1
557
Tumor
-0.1
217
Tumor
-0.1
313
Tumor
-0.1
553
Tumor
-0.1
261
Tumor
-0.1
267
Tumor
-0.1
525
Tumor
-0.2
536
Normal
-0.2
223
Tumor
-0.2
112
Tumor
-0.2
567
Tumor
-0.2
527
Tumor
-0.2
135
Tumor
-0.2
161
Tumor
-0.2
127
Tumor
-0.2
341
Tumor
-0.2
191
Tumor
-0.2
617
Tumor
-0.2
231
Tumor
-0.2
721
Tumor
-0.2
425
Tumor
-0.2
383
Tumor
-0.2
192
Normal
-0.2
195
Tumor
-0.2
1015
Tumor
-0.2
523
Tumor
-0.2
433
Tumor
-0.2
297
Tumor
-0.3
883
Tumor
-0.3
737
Tumor
-0.3
857
Tumor
-0.3
221
Tumor
-0.3
921
Tumor
-0.3
125
Tumor
-0.3
357
Tumor
-0.3
861
Tumor
-0.3
431
Tumor
-0.3
171
Tumor
-0.3
187
Tumor
-0.3
665
Tumor
-0.3
851
Tumor
-0.3
573
Tumor
-0.3
141
Tumor
-0.3
533
Tumor
-0.4
815
Tumor
-0.4
185
Tumor
-0.4
387
Tumor
-0.4
421
Tumor
-0.4
213
Tumor
-0.4
913
Tumor
-0.4
473
Tumor
-0.4
271
Tumor
-0.4
957
Tumor
-0.4
641
Tumor
-0.4
813
Tumor
-0.4
455
Tumor
-0.4
447
Tumor
-0.4
951
Tumor
-0.5
355
Tumor
-0.5
814
Normal
-0.5
715
Tumor
-0.5
535
Tumor
-0.5
743
Tumor
-0.5
663
Tumor
-0.5
375
Tumor
-0.5
467
Tumor
-0.5
983
Tumor
-0.5
647
Tumor
-0.5
413
Tumor
-0.5
463
Tumor
-0.5
963
Tumor
-0.5
385
Tumor
-0.5
685
Tumor
-0.6
493
Tumor
-0.6
977
Tumor
-0.6
917
Tumor
-0.6
1021
Tumor
-0.6
285
Tumor
-0.6
435
Tumor
-0.6
367
Tumor
-0.6
471
Tumor
-0.6
147
Tumor
-0.6
881
Tumor
-0.6
975
Tumor
-0.6
391
Tumor
-0.7
277
Tumor
-0.7
497
Tumor
-0.7
943
Tumor
-0.7
445
Tumor
-0.7
331
Tumor
-0.7
395
Tumor
-0.7
351
Tumor
-0.8
865
Tumor
-0.8
671
Tumor
-0.8
817
Tumor
-0.8
877
Tumor
-0.8
311
Tumor
-0.8
211
Tumor
-0.9
343
Tumor
-0.9
661
Tumor
-0.9
123
Tumor
-0.9
724
Normal
-1.0
131
Tumor
-1.0
545
Tumor
-1.0
283
Tumor
-1.1
965
Tumor
-1.1
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.