MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:1.3 nTPM
HPA Brain:13.6 nTPM
GTEx:1.3 nTPM
FANTOM5:7.7 Scaled Tags Per Million
Pig:12.1 nTPM
Mouse:2.5 nTPM
Allen mouse:0.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 13.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 12.2
2219 Male, age 76, both hemispheres 21.1
2586 Male, age 75, left hemisphere 14.1
1827 Male, age 72, unknown 12.9
2828 Female, age 72, unknown 12.4
2666 Male, age 74, left hemisphere 11.4
1830 Male, age 51, unknown 11.1
1833 Male, age 53, unknown 10.5
2411 Female, age 72, unknown 10.3
1870 Female, age 42, unknown 10.1
2019 Male, age 18, unknown 8.0
Dorsal raphe nucleus
nTPM: 10.6
2016 Female, age 72, unknown 11.5
2298 Female, age 72, unknown 10.9
2047 Male, age 72, unknown 10.8
2750 Male, age 76, both hemispheres 10.5
1828 Male, age 53, unknown 9.2
Inferior colliculus
nTPM: 13.6
2849 Male, age 72, unknown 15.9
1890 Male, age 53, unknown 14.2
1848 Female, age 42, unknown 13.6
2097 Female, age 72, unknown 10.5
Median raphe nucleus
nTPM: 10.7
2220 Male, age 76, midline 10.7
Periaquaductal grey, anterior
nTPM: 13.3
2502 Female, age 75, unknown 13.6
1795 Male, age 51, unknown 13.4
1947 Male, age 18, unknown 13.1
Periaquaductal grey, dorsal
nTPM: 13.4
1840 Male, age 53, unknown 16.0
2850 Male, age 76, both hemispheres 15.5
1831 Male, age 72, unknown 11.3
2464 Female, age 72, unknown 10.9
Periaquaductal grey, lateral
nTPM: 13.0
2053 Male, age 18, unknown 14.2
2140 Male, age 76, both hemispheres 13.7
2272 Male, age 74, both hemispheres 11.2
Pretectal area
nTPM: 10.9
2407 Male, age 75, both hemispheres 15.5
2825 Male, age 18, unknown 14.8
2273 Male, age 74, both hemispheres 12.7
2316 Male, age 76, right hemisphere 12.6
2667 Female, age 75, unknown 11.9
2224 Female, age 72, unknown 11.7
1944 Female, age 72, unknown 8.8
1815 Male, age 53, unknown 8.5
2007 Male, age 72, unknown 8.2
1816 Male, age 51, unknown 7.9
1817 Female, age 42, unknown 7.1
Red nucleus
nTPM: 11.9
2584 Male, age 75, left hemisphere 16.2
1865 Male, age 51, unknown 13.4
1954 Female, age 42, unknown 13.2
2227 Male, age 72, unknown 13.2
1904 Male, age 53, unknown 12.8
2769 Male, age 72, unknown 12.7
2588 Male, age 74, left hemisphere 11.7
2823 Male, age 76, right hemisphere 11.5
2503 Female, age 72, unknown 11.1
1821 Female, age 72, unknown 9.7
2725 Female, age 75, unknown 9.3
2785 Male, age 18, unknown 8.4
Substantia nigra
nTPM: 10.6
2583 Male, age 75, right hemisphere 13.8
2699 Male, age 18, unknown 13.8
2665 Male, age 74, both hemispheres 12.0
2241 Male, age 72, unknown 10.8
2590 Female, age 75, unknown 10.2
1941 Male, age 53, unknown 9.7
1851 Male, age 51, unknown 9.4
1916 Female, age 42, unknown 9.2
2409 Female, age 72, unknown 8.5
1889 Female, age 72, unknown 8.1
Superior colliculus
nTPM: 11.9
2664 Male, age 75, both hemispheres 14.3
1895 Male, age 76, right hemisphere 13.9
1796 Male, age 53, unknown 13.4
2668 Female, age 75, unknown 13.2
1839 Male, age 51, unknown 12.4
2261 Male, age 18, unknown 12.0
1995 Male, age 72, unknown 10.6
2587 Male, age 74, left hemisphere 10.1
1913 Female, age 42, unknown 9.6
2087 Female, age 72, unknown 9.5
Ventral tegmental area
nTPM: 12.9
1942 Male, age 51, unknown 16.5
2218 Male, age 76, both hemispheres 14.1
2021 Male, age 53, unknown 13.8
2223 Female, age 72, unknown 12.1
1915 Female, age 42, unknown 11.6
2410 Female, age 72, unknown 9.5

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 1.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 1.3
Samples: 139

Max nTPM: 3.4
Min nTPM: 0.6
Std nTPM: 0.4
Median nTPM: 1.3
GTEX-YFC4-0011-R2a-SM-4V6DZ 40-49 years, female 3.4
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 3.0
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 2.8
GTEX-NL4W-0011-R2a-SM-2I5GV 50-59 years, male 2.5
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 2.5
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 2.2
GTEX-14BIN-0011-R2a-SM-5S2RJ 50-59 years, female 2.1
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 2.0
GTEX-16Z82-0011-R2b-SM-79OK9 60-69 years, male 2.0
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 2.0
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 2.0
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 7.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 7.7
FF:10158-103A5 76 years, female 7.7

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 12.1
Pig sample Sample description nTPM
Substantia nigra
nTPM: 11.8
Samples: 4

Max nTPM: 14.3
Min nTPM: 10.3
Sample A Female 10.6
Sample B Female 14.3
Sample C Male 12.1
Sample D Male 10.3
Midbrain
nTPM: 11.3
Samples: 4

Max nTPM: 11.7
Min nTPM: 10.7
Sample A Female 11.7
Sample B Female 11.5
Sample C Male 10.7
Sample D Male 11.3
Periaqueductal gray
nTPM: 12.1
Samples: 3

Max nTPM: 12.7
Min nTPM: 11.0
Sample B Female 12.7
Sample C Male 12.7
Sample D Male 11.0
Superior colliculi
nTPM: 10.3
Samples: 4

Max nTPM: 11.8
Min nTPM: 9.2
Sample A Female 10.6
Sample B Female 9.2
Sample C Male 9.5
Sample D Male 11.8

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 2.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 2.5
Samples: 4

Max nTPM: 2.8
Min nTPM: 2.0
Sample A Male 2.0
Sample B Male 2.4
Sample C Female 2.7
Sample D Female 2.8

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.0
1532 Antisense, RP_Baylor_103398, Mouse strain C57BL/6J (56 days, male) 0.0
1533 Antisense, RP_Baylor_103398, Mouse strain C57BL/6J (56 days, male) 0.0

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