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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
HSPB8 is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
10.1
Number of samples
362
Samples
Sample
Description
TPM
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
133.7
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
105.3
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
103.3
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
96.2
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
88.5
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
82.6
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
72.4
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
70.0
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
69.7
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
61.9
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
59.6
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
58.1
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
56.4
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
54.9
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
51.7
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
49.6
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
48.2
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
47.5
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
46.8
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
41.1
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
39.9
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
39.1
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
38.3
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
37.7
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
34.3
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
34.1
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
33.6
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
32.8
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
32.5
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
32.4
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
30.8
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
29.7
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
29.6
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
29.2
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
29.1
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
28.9
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
28.4
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
27.8
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
27.4
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
27.3
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
27.0
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
26.4
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
25.8
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
25.5
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
24.6
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
24.3
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
22.9
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
22.5
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
22.4
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
21.9
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
21.8
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
21.2
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
21.2
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
20.8
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
20.7
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
19.2
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
18.9
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
18.9
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
18.3
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
18.3
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
18.2
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
17.7
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
16.9
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
16.7
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
16.4
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
16.3
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
16.1
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
16.1
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
15.8
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
15.6
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
15.6
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
15.4
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
14.8
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
14.7
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
14.4
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
14.1
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
13.5
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
13.2
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
12.8
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
12.7
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
12.7
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
12.5
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
12.3
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
12.1
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
12.1
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
11.9
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
11.6
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
11.6
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
11.3
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
11.2
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
11.0
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
10.9
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
10.8
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
10.7
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
10.6
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
10.5
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
10.5
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
10.4
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
10.2
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
10.2
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
10.0
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
9.8
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
9.8
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
9.3
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
9.2
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
9.0
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
8.9
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
8.7
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
8.6
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
8.6
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
8.3
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
8.2
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
8.2
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
8.1
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
8.0
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
7.7
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
7.6
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
7.6
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
7.2
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
7.0
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
6.9
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
6.9
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
6.7
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
6.6
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
6.6
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
6.5
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
6.4
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
6.2
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
6.1
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
6.1
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
6.0
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
6.0
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
6.0
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
5.9
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
5.8
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
5.7
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
5.6
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
5.6
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
5.6
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
5.6
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
5.4
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
5.3
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
5.3
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
5.2
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
5.2
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
5.1
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
5.1
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
5.0
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
5.0
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
4.9
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
4.7
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
4.7
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
4.6
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
4.5
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
4.5
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
4.4
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
4.4
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
4.3
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
4.3
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
4.3
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
4.2
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
3.9
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
3.9
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
3.9
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
3.9
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
3.8
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
3.7
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
3.7
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
3.6
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
3.5
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
3.5
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
3.4
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
3.4
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
3.4
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
3.3
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
3.2
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
3.1
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
3.1
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
3.1
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
3.1
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
3.0
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
3.0
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
2.9
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
2.9
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
2.9
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
2.9
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
2.8
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
2.8
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
2.8
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
2.7
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
2.7
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
2.7
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
2.7
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
2.5
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
2.5
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
2.5
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
2.5
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
2.5
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
2.4
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
2.4
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
2.4
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
2.4
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
2.4
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
2.4
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
2.3
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
2.3
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
2.3
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
2.2
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
2.2
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
2.1
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
2.1
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
2.0
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
2.0
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
1.9
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
1.9
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
1.9
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
1.8
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
1.8
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
1.8
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
1.7
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
1.7
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
1.7
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
1.6
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
1.6
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
1.5
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
1.5
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
1.5
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
1.5
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
1.4
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
1.4
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
1.4
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
1.4
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
1.4
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
1.4
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
1.4
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
1.3
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
1.3
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
1.3
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
1.3
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
1.3
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
1.3
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
1.3
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
1.3
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
1.2
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
1.2
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
1.2
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
1.2
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
1.2
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
1.1
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
1.1
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
1.1
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
1.1
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
1.1
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
1.0
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
1.0
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
1.0
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
1.0
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
1.0
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
1.0
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
1.0
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
1.0
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
1.0
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
0.9
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
0.9
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
0.9
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
0.9
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
0.9
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
0.9
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
0.9
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
0.9
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
0.8
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
0.8
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
0.8
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
0.8
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
0.8
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
0.7
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
0.7
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
0.7
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
0.7
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
0.7
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
0.7
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
0.7
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
0.7
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
0.7
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
0.6
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
0.6
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
0.6
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
0.6
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
0.5
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
0.5
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
0.5
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
0.5
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
0.5
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
0.5
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
0.5
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
0.5
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
0.5
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
0.5
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
0.5
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
0.5
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
0.5
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
0.5
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
0.5
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
0.5
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
0.4
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
0.4
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
0.4
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
0.4
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
0.4
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
0.4
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
0.4
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
0.4
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
0.4
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
0.4
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
0.4
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
0.4
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
0.4
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
0.3
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
0.3
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
0.3
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
0.3
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
0.3
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
0.3
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
0.3
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
0.3
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
0.3
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
0.3
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
0.3
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
0.3
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
0.3
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
0.3
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
0.3
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
0.3
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
0.3
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
0.2
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
0.2
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
0.2
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
0.2
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
0.2
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
0.2
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
0.2
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
0.2
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
0.2
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
0.2
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
0.2
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
0.2
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
0.2
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
0.1
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
0.1
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
0.1
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
0.1
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
0.1
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
0.1
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
0.1
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
0.1
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
0.1
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
0.1
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
0.1
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
0.1
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
0.1
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
0.1
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
HSPB8 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
8.3
Number of samples
231
Samples
Sample
Description
TPM
DO45275
0 years, male, NA, stage:3, dead, 10 days
203.9
DO50829
0 years, male, NA, stage:3, alive, 570 days
129.7
DO45303
0 years, female, NA, stage:3, alive, 990 days
56.5
DO45139
0 years, male, NA, stage:3, alive, 1320 days
53.9
DO50805
0 years, male, NA, stage:2, alive, 690 days
52.4
DO45249
0 years, male, NA, stage:1, alive, 630 days
51.0
DO23514
0 years, male, NA, stage:2, alive, 1290 days
44.7
DO45305
0 years, male, NA, stage:4, alive, 300 days
41.6
DO45307
0 years, female, NA, stage:4, dead, 240 days
39.7
DO45211
0 years, male, NA, stage:3, alive, 240 days
36.2
DO45092
0 years, male, NA, stage:4, dead, 1200 days
35.4
DO23530
0 years, male, NA, stage:4, dead, 180 days
29.2
DO45277
0 years, male, NA, stage:3, alive, 600 days
28.9
DO23547
0 years, male, NA, stage:1, alive, 1020 days
28.5
DO23541
0 years, male, NA, stage:2, alive, 930 days
27.4
DO45149
0 years, female, NA, stage:2, alive, 1260 days
27.3
DO45235
0 years, female, NA, stage:1, alive, 900 days
25.7
DO48700
0 years, female, NA, stage:2, alive, 810 days
25.6
DO48719
0 years, male, NA, stage:2, alive, 690 days
25.0
DO227801
0 years, female, NA, stage:1, alive, 660 days
24.8
DO45119
0 years, male, NA, stage:3, dead, 510 days
23.3
DO45165
0 years, male, NA, stage:2, alive, 690 days
22.0
DO23510
0 years, female, NA, stage:2, alive, 870 days
21.6
DO48720
0 years, female, NA, stage:2, alive, 570 days
20.8
DO50776
0 years, male, NA, stage:1, alive, 690 days
19.9
DO45257
0 years, male, NA, stage:3, alive, 810 days
19.6
DO48732
0 years, male, NA, stage:3, alive, 630 days
19.2
DO45131
0 years, male, NA, stage:4, dead, 360 days
18.8
DO45143
0 years, male, NA, stage:3, alive, 1290 days
18.5
DO45273
0 years, male, NA, stage:2, alive, 480 days
17.2
DO45267
0 years, male, NA, stage:3, dead, 570 days
16.8
DO48682
0 years, female, NA, stage:3, dead, 120 days
15.9
DO45135
0 years, male, NA, stage:1, alive, 1410 days
15.5
DO45285
0 years, male, NA, stage:3, alive, 480 days
15.5
DO50825
0 years, male, NA, stage:2, alive, 390 days
14.9
DO45253
0 years, male, NA, stage:2, alive, 870 days
14.5
DO48679
0 years, male, NA, stage:2, alive, 1200 days
14.5
DO23542
0 years, male, NA, stage:3, alive, 960 days
14.4
DO48761
0 years, male, NA, stage:2, alive, 870 days
14.0
DO50774
0 years, female, NA, stage:2, alive, 720 days
13.8
DO45171
0 years, male, NA, stage:3, alive, 600 days
13.0
DO45155
0 years, male, NA, stage:2, alive, 2160 days
13.0
DO48704
0 years, female, NA, stage:3, alive, 750 days
12.3
DO23523
0 years, male, NA, stage:3, alive, 1080 days
12.2
DO23549
0 years, male, NA, stage:3, alive, 990 days
11.6
DO45251
0 years, female, NA, stage:2, alive, 900 days
11.4
DO45095
0 years, male, NA, stage:2, alive, 1620 days
11.3
DO50845
0 years, male, NA, stage:3, alive, 210 days
11.2
DO48733
0 years, male, NA, stage:2, alive, 600 days
11.2
DO48747
0 years, male, NA, stage:3, alive, 540 days
10.7
DO23526
0 years, male, NA, stage:3, alive, 1050 days
10.6
DO45091
0 years, male, NA, stage:2, dead, 1320 days
10.6
DO50822
0 years, male, NA, stage:2, alive, 510 days
10.0
DO45153
0 years, female, NA, stage:2, alive, 1380 days
10.0
DO45231
0 years, male, NA, stage:2, alive, 930 days
8.9
DO45283
0 years, male, NA, stage:3, alive, 510 days
8.6
DO45233
0 years, male, NA, stage:3, alive, 900 days
8.6
DO50778
0 years, male, NA, stage:4, alive, 630 days
8.4
DO48743
0 years, female, NA, stage:2, alive, 570 days
7.7
DO45103
0 years, male, NA, stage:3, alive, 450 days
7.6
DO48736
0 years, female, NA, stage:1, alive, 600 days
7.5
DO48742
0 years, male, NA, stage:2, alive, 600 days
7.5
DO45093
0 years, male, NA, stage:2, dead, 720 days
6.9
DO45241
0 years, male, NA, stage:1, alive, 1080 days
6.9
DO45169
0 years, male, NA, stage:3, alive, 1350 days
6.7
DO23508
0 years, female, NA, stage:2, alive, 390 days
6.6
DO45205
0 years, female, NA, stage:2, dead, 90 days
6.4
DO45181
0 years, female, NA, stage:2, alive, 1200 days
6.4
DO45157
0 years, male, NA, stage:2, alive, 1980 days
6.3
DO48716
0 years, male, NA, stage:2, alive, 720 days
6.3
DO50800
0 years, male, NA, stage:2, alive, 510 days
6.0
DO45109
0 years, male, NA, stage:2, alive, 1590 days
6.0
DO45203
0 years, female, NA, stage:2, alive, 1170 days
5.8
DO45243
0 years, female, NA, stage:3, alive, 930 days
5.8
DO50855
0 years, male, NA, stage:2, alive, 570 days
5.7
DO50808
0 years, male, NA, stage:2, alive, 570 days
5.7
DO23535
0 years, male, NA, stage:1, alive, 960 days
5.7
DO50819
0 years, female, NA, stage:2, alive, 510 days
5.7
DO23544
0 years, male, NA, stage:2, alive, 960 days
5.6
DO23515
0 years, male, NA, stage:2, alive, 1230 days
5.5
DO50809
0 years, male, NA, stage:3, dead, 720 days
5.3
DO45229
0 years, male, NA, stage:1, alive, 990 days
5.2
DO48712
0 years, male, NA, stage:2, alive, 810 days
5.1
DO45223
0 years, male, NA, stage:4, alive, 1020 days
5.0
DO48697
0 years, female, NA, stage:2, dead, 810 days
5.0
DO23551
0 years, male, NA, stage:3, dead, 150 days
4.9
DO50785
0 years, male, NA, stage:4, dead, 90 days
4.9
DO48728
0 years, female, NA, stage:2, alive, 150 days
4.8
DO23546
0 years, male, NA, stage:2, alive, 1050 days
4.8
DO45141
0 years, male, NA, stage:2, alive, 1320 days
4.7
DO45177
0 years, female, NA, stage:3, alive, 1260 days
4.7
DO50803
0 years, female, NA, stage:1, alive, 540 days
4.6
DO50813
0 years, male, NA, stage:2, alive, 420 days
4.5
DO23524
0 years, female, NA, stage:2, alive, 1050 days
4.2
DO45297
0 years, female, NA, stage:4, dead, 1260 days
4.2
DO23521
0 years, male, NA, stage:3, alive, 1110 days
4.2
DO45213
0 years, male, NA, stage:1, alive, 1200 days
4.2
DO45221
0 years, female, NA, stage:4, dead, 390 days
4.2
DO50787
0 years, male, NA, stage:3, alive, 480 days
4.1
DO50815
0 years, male, NA, stage:3, alive, 150 days
4.1
DO45137
0 years, male, NA, stage:1, alive, 1320 days
4.1
DO50806
0 years, male, NA, stage:4, alive, 540 days
4.1
DO45287
0 years, male, NA, stage:1, alive, 390 days
3.9
DO50791
0 years, female, NA, stage:1, dead, 480 days
3.9
DO45129
0 years, male, NA, stage:3, alive, 1470 days
3.8
DO45289
0 years, female, NA, stage:3, alive, 360 days
3.6
DO45187
0 years, female, NA, stage:1, alive, 1260 days
3.5
DO23519
0 years, male, NA, stage:3, alive, 630 days
3.4
DO23513
0 years, male, NA, stage:3, alive, 1200 days
3.4
DO45201
0 years, male, NA, stage:1, alive, 900 days
3.2
DO45281
0 years, male, NA, stage:4, alive, 750 days
3.2
DO23518
0 years, male, NA, stage:2, alive, 1320 days
3.2
DO50850
0 years, male, NA, stage:3, alive, 720 days
3.0
DO50817
0 years, male, NA, stage:2, alive, 390 days
3.0
DO45261
0 years, male, NA, stage:3, alive, 990 days
3.0
DO45225
0 years, male, NA, stage:1, alive, 1050 days
2.9
DO23531
0 years, female, NA, stage:3, alive, 900 days
2.9
DO23539
0 years, male, NA, stage:1, alive, 1110 days
2.9
DO48701
0 years, male, NA, stage:2, alive, 780 days
2.8
DO45189
0 years, female, NA, stage:2, alive, 1200 days
2.8
DO45279
0 years, male, NA, stage:3, alive, 1290 days
2.8
DO48672
0 years, male, NA, stage:2, alive, 450 days
2.8
DO48725
0 years, male, NA, stage:1, alive, 780 days
2.7
DO45259
0 years, male, NA, stage:3, alive, 330 days
2.5
DO45173
0 years, male, NA, stage:3, alive, 1170 days
2.5
DO48737
0 years, male, NA, stage:1, alive, 720 days
2.5
DO45263
0 years, male, NA, stage:3, dead, 270 days
2.4
DO45255
0 years, male, NA, stage:3, alive, 720 days
2.4
DO48717
0 years, male, NA, stage:4, dead, 180 days
2.3
DO48693
0 years, male, NA, stage:2, alive, 900 days
2.3
DO45245
0 years, female, NA, stage:2, dead, 240 days
2.1
DO45301
0 years, male, NA, stage:2, dead, 1440 days
2.1
DO45121
0 years, male, NA, stage:3, alive, 1530 days
2.1
DO45185
0 years, male, NA, stage:2, alive, 600 days
2.1
DO23511
0 years, female, NA, stage:3, dead, 180 days
1.9
DO45161
0 years, male, NA, stage:2, dead, 540 days
1.9
DO45207
0 years, male, NA, stage:1, alive, 1050 days
1.9
DO45159
0 years, male, NA, stage:3, alive, 1470 days
1.9
DO23552
0 years, female, NA, stage:1, alive, 810 days
1.8
DO45099
0 years, male, NA, stage:3, alive, 1590 days
1.7
DO23525
0 years, male, NA, stage:4, alive, 1050 days
1.7
DO23527
0 years, male, NA, stage:1, alive, 1050 days
1.6
DO45101
0 years, male, NA, stage:2, alive, 1680 days
1.6
DO48730
0 years, female, NA, stage:2, alive, 630 days
1.5
DO45219
0 years, male, NA, stage:2, alive, 1080 days
1.5
DO48760
0 years, female, NA, stage:2, alive, 690 days
1.5
DO45127
0 years, male, NA, stage:3, dead, 420 days
1.5
DO45094
0 years, male, NA, stage:3, alive, 1650 days
1.5
DO23545
0 years, male, NA, stage:2, dead, 570 days
1.3
DO50820
0 years, female, NA, stage:3, alive, 510 days
1.3
DO48695
0 years, male, NA, stage:2, alive, 720 days
1.3
DO45197
0 years, male, NA, stage:2, alive, 1170 days
1.3
DO45247
0 years, female, NA, stage:2, alive, 210 days
1.3
DO23532
0 years, female, NA, stage:1, alive, 960 days
1.2
DO23550
0 years, male, NA, stage:1, alive, 990 days
1.2
DO48741
0 years, male, NA, stage:3, alive, 240 days
1.1
DO48759
0 years, male, NA, stage:3, alive, 720 days
1.1
DO45179
0 years, female, NA, stage:2, alive, 600 days
1.0
DO23543
0 years, male, NA, stage:2, alive, 1020 days
1.0
DO23548
0 years, female, NA, stage:1, alive, 840 days
1.0
DO23538
0 years, male, NA, stage:2, alive, 450 days
0.9
DO227643
0 years, male, NA, stage:2, alive, 1260 days
0.9
DO23536
0 years, male, NA, stage:2, alive, 930 days
0.9
DO23540
0 years, male, NA, stage:1, alive, 750 days
0.8
DO50798
0 years, male, NA, stage:3, dead, 30 days
0.8
DO23512
0 years, male, NA, stage:1, alive, 1260 days
0.8
DO45123
0 years, female, NA, stage:2, dead, 570 days
0.8
DO50783
0 years, male, NA, stage:3, alive, 480 days
0.8
DO50807
0 years, male, NA, stage:1, alive, 540 days
0.8
DO50818
0 years, male, NA, stage:2, alive, 510 days
0.7
DO48723
0 years, male, NA, stage:1, alive, 600 days
0.7
DO45215
0 years, male, NA, stage:2, alive, 1170 days
0.7
DO45195
0 years, male, NA, stage:1, alive, 390 days
0.7
DO23537
0 years, male, NA, stage:2, dead, 900 days
0.7
DO45125
0 years, male, NA, stage:3, alive, 1680 days
0.7
DO23517
0 years, male, NA, stage:2, alive, 1200 days
0.7
DO50816
0 years, male, NA, stage:2, alive, 390 days
0.6
DO45113
0 years, male, NA, stage:3, alive, 1560 days
0.6
DO45237
0 years, male, NA, stage:2, alive, 900 days
0.6
DO45299
0 years, female, NA, stage:1, alive, 1440 days
0.6
DO48757
0 years, female, NA, stage:3, alive, 480 days
0.6
DO23529
0 years, male, NA, stage:4, alive, 930 days
0.6
DO45145
0 years, male, NA, stage:3, dead, 60 days
0.5
DO45227
0 years, female, NA, stage:2, alive, 1020 days
0.5
DO50839
0 years, female, NA, stage:3, alive, 330 days
0.5
DO50840
0 years, male, NA, stage:2, alive, 330 days
0.5
DO23528
0 years, female, NA, stage:2, alive, 1020 days
0.5
DO45269
0 years, male, NA, stage:3, alive, 750 days
0.5
DO48674
0 years, male, NA, stage:2, alive, 1260 days
0.5
DO45096
0 years, male, NA, stage:2, dead, 1290 days
0.4
DO48715
0 years, female, NA, stage:2, dead, 690 days
0.4
DO48681
0 years, male, NA, stage:2, alive, 900 days
0.4
DO45133
0 years, male, NA, stage:3, dead, 660 days
0.4
DO50789
0 years, female, NA, stage:2, alive, 570 days
0.4
DO50802
0 years, male, NA, stage:2, alive, 930 days
0.4
DO50799
0 years, female, NA, stage:2, alive, 540 days
0.4
DO50811
0 years, male, NA, stage:1, alive, 450 days
0.4
DO50814
0 years, male, NA, stage:3, alive, 420 days
0.3
DO45199
0 years, female, NA, stage:2, alive, 1350 days
0.3
DO50804
0 years, male, NA, stage:2, alive, 720 days
0.3
DO50857
0 years, male, NA, stage:2, alive, 210 days
0.3
DO23533
0 years, male, NA, stage:2, alive, 900 days
0.3
DO45105
0 years, male, NA, stage:1, alive, 1680 days
0.3
DO45183
0 years, female, NA, stage:2, dead, 570 days
0.3
DO45167
0 years, male, NA, stage:2, dead, 1440 days
0.3
DO45191
0 years, female, NA, stage:2, alive, 1200 days
0.3
DO45163
0 years, male, NA, stage:2, alive, 960 days
0.3
DO23534
0 years, male, NA, stage:2, alive, 840 days
0.3
DO45193
0 years, female, NA, stage:4, dead, 120 days
0.2
DO45111
0 years, male, NA, stage:2, alive, 1590 days
0.2
DO48677
0 years, male, NA, stage:3, alive, 1140 days
0.2
DO48706
0 years, male, NA, stage:2, alive, 870 days
0.2
DO50793
0 years, male, NA, stage:4, alive, 540 days
0.2
DO50832
0 years, male, NA, stage:3, alive, 90 days
0.2
DO45117
0 years, female, NA, stage:2, dead, 1110 days
0.2
DO48746
0 years, male, NA, stage:3, alive, 570 days
0.2
DO45209
0 years, male, NA, stage:4, alive, 1350 days
0.2
DO23516
0 years, male, NA, stage:3, dead, 20 days
0.2
DO48727
0 years, female, NA, stage:2, dead, 390 days
0.1
DO45239
0 years, male, NA, stage:2, alive, 870 days
0.1
DO45097
0 years, male, NA, stage:3, alive, 1620 days
0.1
DO45217
0 years, female, NA, stage:3, dead, 270 days
0.1
DO45107
0 years, female, NA, stage:2, alive, 1710 days
0.1
DO45265
0 years, male, NA, stage:3, alive, 1020 days
0.1
DO45175
0 years, male, NA, stage:2, alive, 1140 days
0.1
DO50859
0 years, male, NA, stage:2, alive, 180 days
0.1
DO48721
0 years, female, NA, stage:1, alive, 900 days
0.1
DO23509
0 years, male, NA, stage:3, dead, 780 days
0.1
DO45115
0 years, male, NA, stage:2, alive, 840 days
0.1
DO48751
0 years, male, NA, stage:2, dead, 480 days
0.1
DO50844
0 years, male, NA, stage:4, alive, 300 days
0.0
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
533
Tumor
2.6
925
Tumor
2.2
395
Tumor
1.9
911
Tumor
1.8
427
Tumor
1.6
525
Tumor
1.6
913
Tumor
1.4
451
Tumor
1.4
513
Tumor
1.3
557
Tumor
1.3
231
Tumor
1.2
132
Normal
0.8
142
Normal
0.8
491
Tumor
0.7
257
Tumor
0.6
567
Tumor
0.6
138
Normal
0.6
537
Tumor
0.6
536
Normal
0.6
146
Normal
0.5
545
Tumor
0.5
283
Tumor
0.5
354
Normal
0.5
267
Tumor
0.5
443
Tumor
0.5
161
Tumor
0.5
881
Tumor
0.5
444
Normal
0.5
527
Tumor
0.5
192
Normal
0.4
136
Normal
0.4
697
Tumor
0.4
713
Tumor
0.4
387
Tumor
0.4
328
Normal
0.4
211
Tumor
0.3
478
Normal
0.3
311
Tumor
0.3
327
Tumor
0.3
916
Normal
0.3
436
Normal
0.3
363
Tumor
0.3
471
Tumor
0.3
636
Normal
0.3
492
Normal
0.3
364
Normal
0.2
352
Normal
0.2
538
Normal
0.2
818
Normal
0.2
461
Tumor
0.2
224
Normal
0.2
755
Tumor
0.2
852
Normal
0.2
958
Normal
0.2
524
Normal
0.2
342
Normal
0.2
915
Tumor
0.2
223
Tumor
0.2
823
Tumor
0.2
493
Tumor
0.1
816
Normal
0.1
498
Normal
0.1
353
Tumor
0.1
824
Normal
0.1
171
Tumor
0.1
943
Tumor
0.1
616
Normal
0.1
375
Tumor
0.1
714
Normal
0.1
1044
Normal
0.1
976
Normal
0.1
432
Normal
0.1
618
Normal
0.1
384
Normal
0.1
298
Normal
0.1
361
Tumor
0.1
358
Normal
0.1
975
Tumor
0.1
367
Tumor
0.1
416
Normal
0.1
421
Tumor
0.0
884
Normal
0.0
434
Normal
0.0
716
Normal
0.0
376
Normal
0.0
185
Tumor
0.0
572
Normal
0.0
574
Normal
0.0
917
Tumor
0.0
671
Tumor
0.0
188
Normal
0.0
392
Normal
0.0
642
Normal
0.0
516
Normal
0.0
366
Normal
0.0
448
Normal
0.0
386
Normal
0.0
385
Tumor
0.0
172
Normal
0.0
982
Normal
-0.1
447
Tumor
-0.1
874
Normal
-0.1
553
Tumor
-0.1
563
Tumor
-0.1
284
Normal
-0.1
278
Normal
-0.1
268
Normal
-0.1
858
Normal
-0.1
228
Normal
-0.1
314
Normal
-0.1
558
Normal
-0.1
698
Normal
-0.1
866
Normal
-0.1
195
Tumor
-0.1
968
Normal
-0.1
137
Tumor
-0.1
312
Normal
-0.1
494
Normal
-0.1
568
Normal
-0.1
455
Tumor
-0.1
212
Normal
-0.1
362
Normal
-0.1
356
Normal
-0.1
868
Normal
-0.1
964
Normal
-0.2
641
Tumor
-0.2
474
Normal
-0.2
446
Normal
-0.2
696
Normal
-0.2
232
Normal
-0.2
912
Normal
-0.2
564
Normal
-0.2
966
Normal
-0.2
297
Tumor
-0.2
472
Normal
-0.2
857
Tumor
-0.2
412
Normal
-0.2
484
Normal
-0.2
528
Normal
-0.2
162
Normal
-0.2
628
Normal
-0.2
882
Normal
-0.2
786
Normal
-0.2
918
Normal
-0.2
415
Tumor
-0.2
984
Normal
-0.2
686
Normal
-0.2
1015
Tumor
-0.2
722
Normal
-0.2
332
Normal
-0.2
1045
Tumor
-0.2
258
Normal
-0.2
978
Normal
-0.2
983
Tumor
-0.2
1013
Tumor
-0.2
1027
Tumor
-0.2
148
Normal
-0.2
262
Normal
-0.3
466
Normal
-0.3
914
Normal
-0.3
924
Normal
-0.3
617
Tumor
-0.3
546
Normal
-0.3
923
Tumor
-0.3
394
Normal
-0.3
286
Normal
-0.3
814
Normal
-0.3
534
Normal
-0.3
191
Tumor
-0.3
368
Normal
-0.3
213
Tumor
-0.3
488
Normal
-0.3
956
Normal
-0.3
721
Tumor
-0.3
883
Tumor
-0.3
272
Normal
-0.3
462
Normal
-0.4
514
Normal
-0.4
817
Tumor
-0.4
554
Normal
-0.4
778
Normal
-0.4
926
Normal
-0.4
187
Tumor
-0.4
864
Normal
-0.4
746
Normal
-0.4
344
Normal
-0.4
482
Normal
-0.4
672
Normal
-0.4
186
Normal
-0.4
922
Normal
-0.4
744
Normal
-0.4
715
Tumor
-0.4
396
Normal
-0.4
878
Normal
-0.4
1046
Normal
-0.4
742
Normal
-0.4
1028
Normal
-0.4
483
Tumor
-0.5
218
Normal
-0.5
465
Tumor
-0.5
1014
Normal
-0.5
952
Normal
-0.5
756
Normal
-0.5
285
Tumor
-0.5
666
Normal
-0.5
963
Tumor
-0.5
217
Tumor
-0.5
261
Tumor
-0.5
456
Normal
-0.5
468
Normal
-0.5
662
Normal
-0.5
487
Tumor
-0.5
464
Normal
-0.6
861
Tumor
-0.6
433
Tumor
-0.6
135
Tumor
-0.6
526
Normal
-0.6
141
Tumor
-0.6
877
Tumor
-0.6
227
Tumor
-0.6
424
Normal
-0.6
452
Normal
-0.6
428
Normal
-0.6
953
Tumor
-0.6
1016
Normal
-0.6
221
Tumor
-0.6
214
Normal
-0.6
535
Tumor
-0.6
473
Tumor
-0.6
615
Tumor
-0.6
388
Normal
-0.6
481
Tumor
-0.7
862
Normal
-0.7
723
Tumor
-0.7
355
Tumor
-0.7
518
Normal
-0.7
351
Tumor
-0.7
413
Tumor
-0.7
664
Normal
-0.7
785
Tumor
-0.7
1032
Normal
-0.7
863
Tumor
-0.7
728
Normal
-0.7
196
Normal
-0.7
944
Normal
-0.7
383
Tumor
-0.7
977
Tumor
-0.7
1043
Tumor
-0.7
1042
Normal
-0.7
867
Tumor
-0.8
738
Normal
-0.8
463
Tumor
-0.8
497
Tumor
-0.8
627
Tumor
-0.8
954
Normal
-0.8
393
Tumor
-0.8
145
Tumor
-0.8
431
Tumor
-0.8
467
Tumor
-0.9
414
Normal
-0.9
938
Normal
-0.9
873
Tumor
-0.9
921
Tumor
-0.9
1026
Normal
-0.9
813
Tumor
-0.9
981
Tumor
-0.9
422
Normal
-0.9
1022
Normal
-0.9
423
Tumor
-0.9
222
Normal
-0.9
571
Tumor
-1.0
523
Tumor
-1.0
573
Tumor
-1.0
665
Tumor
-1.0
391
Tumor
-1.0
343
Tumor
-1.1
851
Tumor
-1.1
648
Normal
-1.1
426
Normal
-1.1
685
Tumor
-1.1
365
Tumor
-1.1
965
Tumor
-1.1
815
Tumor
-1.1
147
Tumor
-1.1
741
Tumor
-1.2
937
Tumor
-1.2
745
Tumor
-1.2
331
Tumor
-1.2
477
Tumor
-1.2
277
Tumor
-1.2
425
Tumor
-1.2
517
Tumor
-1.3
957
Tumor
-1.3
647
Tumor
-1.3
411
Tumor
-1.4
967
Tumor
-1.4
515
Tumor
-1.4
695
Tumor
-1.4
955
Tumor
-1.5
341
Tumor
-1.5
271
Tumor
-1.5
724
Normal
-1.5
313
Tumor
-1.5
635
Tumor
-1.5
131
Tumor
-1.6
661
Tumor
-1.7
435
Tumor
-1.7
743
Tumor
-1.7
445
Tumor
-1.7
737
Tumor
-1.7
951
Tumor
-1.7
777
Tumor
-1.8
865
Tumor
-1.9
727
Tumor
-1.9
1031
Tumor
-2.0
663
Tumor
-2.0
1041
Tumor
-2.1
357
Tumor
-2.2
1025
Tumor
-2.3
1021
Tumor
-2.4
111
Normal
N/A
112
Tumor
N/A
113
Tumor
N/A
114
Normal
N/A
123
Tumor
N/A
124
Normal
N/A
125
Tumor
N/A
126
Normal
N/A
127
Tumor
N/A
128
Normal
N/A
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
