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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
h
m
l
n
Glial cells:
Not detected
Neuronal cells:
Medium
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
73.7
nTPM
HPA Brain:
49.3
nTPM
GTEx:
73.7
nTPM
FANTOM5:
201.1
Scaled Tags Per Million
Pig:
87.5
nTPM
Mouse:
240.5
nTPM
Allen mouse:
18.6
Expression energy
HIPPOCAMPUS - Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
Antibody HPA003243
Glial cells
Not detected
Neuronal cells
Medium
HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
49.3
Sample id
Sample description
nTPM
Hippocampus nTPM: 40.0
1898
Male, age 80, left hemisphere
55.6
1855
Male, age 76, left hemisphere
43.9
1911
Female, age 85, right hemisphere
42.6
2529
Female, age 94, left hemisphere
38.3
2148
Female, age 91, left hemisphere
30.6
2621
Female, age 67, right hemisphere
28.9
Dentate gyrus nTPM: 42.2
2010
Male, age 76, both hemispheres
57.7
1927
Female, age 91, both hemispheres
48.9
2530
Female, age 94, left hemisphere
46.1
2246
Female, age 85, both hemispheres
40.5
2528
Male, age 74, both hemispheres
36.1
2531
Female, age 67, both hemispheres
24.1
Entorhinal gyrus nTPM: 30.7
2117
Female, age 91, right hemisphere
40.9
1938
Female, age 85, left hemisphere
38.3
2764
Male, age 80, right hemisphere
32.0
1787
Male, age 76, left hemisphere
31.3
2686
Male, age 75, right hemisphere
23.0
2613
Female, age 94, left hemisphere
18.6
Hippocampus, CA1 nTPM: 49.3
2749
Male, age 80, left hemisphere
76.1
1873
Female, age 85, both hemispheres
61.6
2045
Male, age 76, both hemispheres
42.3
2082
Female, age 91, right hemisphere
34.7
2527
Male, age 74, both hemispheres
31.9
Hippocampus, CA2 nTPM: 45.5
1963
Male, age 80, left hemisphere
64.4
1892
Male, age 76, both hemispheres
63.7
1940
Female, age 85, left hemisphere
48.1
2249
Male, age 74, both hemispheres
41.1
2113
Female, age 91, right hemisphere
31.0
2437
Female, age 94, left hemisphere
24.5
Hippocampus, CA3 nTPM: 43.8
2137
Male, age 80, left hemisphere
69.9
1891
Female, age 85, both hemispheres
50.8
1867
Male, age 76, both hemispheres
50.1
2620
Female, age 94, left hemisphere
42.0
2436
Male, age 74, both hemispheres
29.7
2861
Female, age 67, both hemispheres
20.1
Parahippocampal cortex nTPM: 33.3
1850
Male, age 80, both hemispheres
57.9
2018
Male, age 76, both hemispheres
47.4
1933
Female, age 85, both hemispheres
43.3
1990
Female, age 91, right hemisphere
33.7
2250
Female, age 67, right hemisphere
29.8
2692
Male, age 74, both hemispheres
28.6
2532
Female, age 72, left hemisphere
27.9
2693
Female, age 94, both hemispheres
26.4
2245
Female, age 91, both hemispheres
22.1
2622
Female, age 67, right hemisphere
15.9
Perirhinal gyrus nTPM: 43.9
1794
Male, age 80, right hemisphere
53.3
1847
Female, age 91, left hemisphere
53.1
1841
Female, age 85, right hemisphere
51.2
2848
Male, age 76, right hemisphere
34.3
2521
Female, age 94, right hemisphere
27.4
Subiculum nTPM: 40.3
1901
Male, age 80, both hemispheres
56.6
1977
Female, age 85, both hemispheres
49.5
2042
Male, age 76, both hemispheres
45.4
2729
Female, age 91, right hemisphere
33.9
2438
Female, age 94, left hemisphere
30.0
2619
Male, age 74, both hemispheres
26.5
HIPPOCAMPAL FORMATION - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
73.7
GTEx sample id
Sample description
nTPM
Brain - Hippocampus Average nTPM: 73.7
Samples: 197
Max nTPM: 147.4
Min nTPM: 15.1
Std nTPM: 26.2
Median nTPM: 70.1
GTEX-13QIC-0011-R1a-SM-5O9CJ
60-69 years, female
147.4
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y
40-49 years, male
138.1
GTEX-131XH-0011-R1a-SM-5DUWA
50-59 years, male
135.6
GTEX-Q2AG-0011-R1A-SM-2HMJI
40-49 years, female
127.4
GTEX-1F48J-0011-R1a-SM-9QEIC
50-59 years, female
126.0
GTEX-13RTJ-0011-R1a-SM-5O9D9
60-69 years, male
124.8
GTEX-15ER7-0011-R1b-SM-7KUE1
20-29 years, female
123.4
GTEX-1IY9M-0011-R1a-SM-EXURZ
60-69 years, male
120.2
GTEX-1IOXB-0011-R1a-SM-D4P27
50-59 years, male
119.7
GTEX-17EVP-0011-R1a-SM-7DHLA
40-49 years, male
119.4
GTEX-WZTO-0011-R1B-SM-3NMAR
40-49 years, male
119.0
GTEX-1H3O1-0011-R1b-SM-CL554
60-69 years, male
118.9
GTEX-14C5O-0011-R1b-SM-6AJBW
60-69 years, male
117.8
GTEX-WHSE-0011-R1A-SM-3P5ZK
20-29 years, male
117.8
GTEX-P44H-0011-R1A-SM-3NM8J
40-49 years, male
114.0
GTEX-13JUV-0011-R1a-SM-5LZY4
40-49 years, female
113.8
GTEX-1F75A-0011-R1b-SM-CE6RA
50-59 years, male
111.7
GTEX-1B8L1-0011-R1a-SM-7P8SS
60-69 years, male
111.4
GTEX-YFC4-0011-R1a-SM-4V6EH
40-49 years, female
111.0
GTEX-1HSKV-0011-R1b-SM-CMKH7
60-69 years, male
110.9
GTEX-14LLW-0011-R1a-SM-5ZZVD
70-79 years, female
110.7
GTEX-1HT8W-0011-R1b-SM-CJI3V
30-39 years, male
110.7
GTEX-1HBPI-0011-R1b-SM-A9SKF
50-59 years, male
109.1
GTEX-N7MS-0011-R1a-SM-2HMJG
60-69 years, male
108.2
GTEX-1IDJH-0011-R1b-SM-ARU6U
70-79 years, male
107.9
GTEX-13JVG-0011-R1a-SM-5KM32
60-69 years, male
107.4
GTEX-16XZZ-0011-R1a-SM-7LTAH
60-69 years, male
106.9
GTEX-17EVQ-0011-R1a-SM-7189S
70-79 years, male
106.2
GTEX-1EMGI-0011-R1b-SM-9OSWZ
60-69 years, male
103.4
GTEX-1LB8K-0011-R1b-SM-EZ6MV
50-59 years, male
103.3
GTEX-1H23P-0011-R1a-SM-ACKVC
60-69 years, male
103.2
GTEX-17MF6-0011-R1a-SM-72D6O
40-49 years, male
103.0
GTEX-1I1GQ-0011-R1a-SM-CY8GG
50-59 years, male
101.5
GTEX-12ZZX-0011-R1a-SM-5EQ6B
40-49 years, female
101.3
GTEX-1B933-0011-R1b-SM-9QEGW
50-59 years, female
101.1
GTEX-N7MT-0011-R1a-SM-CNPO1
60-69 years, female
100.6
GTEX-1AX9I-0011-R1b-SM-7RHG2
60-69 years, male
99.4
GTEX-1H3NZ-0011-R1a-SM-CKZP5
60-69 years, male
99.2
GTEX-1CB4G-0011-R1b-SM-9QEHT
60-69 years, male
98.6
GTEX-1BAJH-0011-R1a-SM-7P8SV
70-79 years, male
97.9
GTEX-1ICLZ-0011-R1b-SM-A9SM3
60-69 years, male
97.6
GTEX-1H1CY-0011-R1a-SM-CKZOZ
60-69 years, female
96.8
GTEX-144GL-0011-R1a-SM-5PNZ5
50-59 years, male
96.6
GTEX-WL46-0011-R1A-SM-3LK6M
50-59 years, male
95.7
GTEX-13O3O-0011-R1b-SM-5KM2K
60-69 years, female
95.6
GTEX-17JCI-0011-R1b-SM-718A3
60-69 years, female
95.3
GTEX-T6MN-0011-R1A-SM-32QOY
50-59 years, male
95.1
GTEX-1H1ZS-0011-R1b-SM-A9G1E
70-79 years, male
94.5
GTEX-13N1W-0011-R1b-SM-5MR4T
70-79 years, male
93.3
GTEX-1E2YA-0011-R1b-SM-CJI29
50-59 years, male
92.6
GTEX-145MH-0011-R1b-SM-5PNWY
50-59 years, male
92.1
GTEX-13N2G-0011-R1b-SM-5MR3G
60-69 years, male
92.0
GTEX-T5JC-0011-R1A-SM-32PM6
20-29 years, male
91.3
GTEX-ZAB4-0011-R1a-SM-4RGNO
40-49 years, male
91.1
GTEX-15UF6-0011-R1a-SM-9QEGH
70-79 years, female
90.4
GTEX-WWYW-0011-R1A-SM-3TW8G
50-59 years, female
90.3
GTEX-1GN1U-0011-R1a-SM-CJI25
50-59 years, female
89.6
GTEX-12WSE-0011-R1b-SM-5GU4V
20-29 years, male
87.8
GTEX-RNOR-0011-R1A-SM-CNNP5
50-59 years, female
86.7
GTEX-1GMR8-0011-R1b-SM-CJI2O
50-59 years, female
85.9
GTEX-17HG3-0011-R1a-SM-7LG6H
30-39 years, female
84.7
GTEX-13G51-0011-R1a-SM-5LZYR
60-69 years, male
84.5
GTEX-QMR6-0011-R1A-SM-32PKW
50-59 years, male
84.0
GTEX-12WSH-0011-R1a-SM-5GU5V
50-59 years, male
83.6
GTEX-139TT-0011-R1a-SM-5LZVD
60-69 years, male
83.4
GTEX-13FXS-0011-R1a-SM-5K7U6
50-59 years, male
83.4
GTEX-1A8G6-0011-R1a-SM-7P8PC
60-69 years, male
83.2
GTEX-1HGF4-0011-R1a-SM-CJI3S
60-69 years, male
82.0
GTEX-1C6VQ-0011-R1a-SM-7P8Q2
50-59 years, male
81.4
GTEX-1H1DG-0011-R1b-SM-CKZP1
70-79 years, male
80.7
GTEX-13OW6-0011-R1a-SM-5L3HQ
50-59 years, male
80.6
GTEX-13OVL-0011-R1a-SM-5L3H5
50-59 years, male
79.9
GTEX-1I1GS-0011-R1a-SM-CJI43
60-69 years, male
79.4
GTEX-1313W-0011-R1b-SM-5EQ4A
50-59 years, female
79.0
GTEX-14ABY-0011-R1a-SM-6EU2W
50-59 years, male
78.9
GTEX-13X6I-0011-R1b-SM-5PNZC
60-69 years, male
78.6
GTEX-145LU-0011-R1a-SM-5Q5CE
50-59 years, male
78.1
GTEX-14PN4-0011-R1b-SM-69LP8
50-59 years, male
77.5
GTEX-1I1GV-0011-R1a-SM-CL559
60-69 years, male
77.5
GTEX-11DXW-0011-R1a-SM-DNZZD
40-49 years, male
77.4
GTEX-ZDXO-0011-R1a-SM-4WKF4
60-69 years, male
75.7
GTEX-ZUA1-0011-R1a-SM-4YCE2
40-49 years, male
75.2
GTEX-1B8SF-0011-R1b-SM-7P8Q8
60-69 years, male
75.1
GTEX-11GSO-0011-R1b-SM-57WD3
60-69 years, male
74.6
GTEX-1EKGG-0011-R1b-SM-9QEI1
60-69 years, male
74.6
GTEX-1F6IF-0011-R1b-SM-9WG78
60-69 years, male
73.7
GTEX-1212Z-0011-R1b-SM-5BC72
60-69 years, male
73.5
GTEX-13O3Q-0011-R1b-SM-5KM3L
50-59 years, male
73.4
GTEX-17HHY-0011-R1a-SM-7189V
50-59 years, male
73.3
GTEX-13FLW-0011-R1b-SM-5LZX2
50-59 years, male
72.9
GTEX-15DCD-0011-R1b-SM-6LPIJ
70-79 years, female
72.7
GTEX-XMD1-0011-R1A-SM-4AT4C
60-69 years, male
72.2
GTEX-12WSF-0011-R1a-SM-5DUVI
70-79 years, male
72.1
GTEX-18A6Q-0011-R1b-SM-731DI
60-69 years, male
72.1
GTEX-1J1OQ-0011-R1a-SM-A9G1Z
40-49 years, female
72.0
GTEX-1EH9U-0011-R1b-SM-CJI2B
60-69 years, male
71.9
GTEX-QVUS-0011-R1A-SM-3GAD2
60-69 years, female
71.2
GTEX-P44G-0011-R1A-SM-2I3FE
30-39 years, male
70.4
GTEX-14LZ3-0011-R1a-SM-69LP5
60-69 years, female
70.1
GTEX-15CHQ-0011-R1a-SM-COH27
60-69 years, male
69.9
GTEX-1F6I4-0011-R1a-SM-9OSWU
60-69 years, male
69.7
GTEX-11TUW-0011-R1a-SM-DO92S
60-69 years, male
69.5
GTEX-1GN73-0011-R1a-SM-CKZNT
60-69 years, male
69.2
GTEX-16YQH-0011-R1a-SM-7LT8R
30-39 years, male
69.0
GTEX-1EX96-0011-R1a-SM-CE6R5
50-59 years, male
69.0
GTEX-13NZA-0011-R1b-SM-5LUAF
60-69 years, male
68.9
GTEX-14E6D-0011-R1b-SM-5YYAW
50-59 years, male
68.7
GTEX-11GS4-0011-R1a-SM-DO129
60-69 years, male
68.7
GTEX-13RTL-0011-R1a-SM-5PNZ8
40-49 years, male
68.5
GTEX-13S7M-0011-R1b-SM-5PNZE
60-69 years, female
68.5
GTEX-14E7W-0011-R1b-SM-5YYAT
70-79 years, male
68.3
GTEX-14PJM-0011-R1a-SM-CNPO3
50-59 years, female
67.6
GTEX-QVJO-0011-R1A-SM-2S1QI
60-69 years, female
67.1
GTEX-1IKK5-0011-R1b-SM-CE6SQ
60-69 years, male
67.1
GTEX-PVOW-0011-R1A-SM-32PL6
40-49 years, male
66.1
GTEX-11WQC-0011-R1b-SM-DO932
60-69 years, male
66.1
GTEX-14JIY-0011-R1a-SM-68713
60-69 years, male
65.7
GTEX-1I1HK-0011-R1b-SM-CM2T7
60-69 years, male
65.7
GTEX-1GN2E-0011-R1b-SM-CE6RJ
60-69 years, male
65.3
GTEX-1C6VR-0011-R1a-SM-7MXUE
60-69 years, male
65.1
GTEX-17HII-0011-R1b-SM-7MGVW
50-59 years, male
65.0
GTEX-11ZVC-0011-R1b-SM-5BC6M
50-59 years, female
64.3
GTEX-14PQA-0011-R1b-SM-6EU1G
50-59 years, female
63.7
GTEX-13QJC-0011-R1b-SM-5S2UU
60-69 years, female
63.5
GTEX-1E1VI-0011-R1a-SM-ARZMM
50-59 years, male
63.4
GTEX-1GF9W-0011-R1a-SM-9QEIQ
60-69 years, male
63.0
GTEX-183WM-0011-R1a-SM-718A8
70-79 years, female
62.1
GTEX-WVLH-0011-R1A-SM-4MVOK
50-59 years, male
62.1
GTEX-X585-0011-R1B-SM-46MVE
50-59 years, male
62.0
GTEX-145LS-0011-R1b-SM-5PNUP
60-69 years, female
61.4
GTEX-131YS-0011-R1a-SM-5DUXC
60-69 years, female
61.0
GTEX-1F75W-0011-R1a-SM-ARU81
60-69 years, male
60.7
GTEX-13OW5-0011-R1b-SM-5L3GE
60-69 years, male
60.2
GTEX-13NYB-0011-R1b-SM-5KM4F
40-49 years, male
59.9
GTEX-11GSP-0011-R1a-SM-9QEJ3
60-69 years, female
59.9
GTEX-13112-0011-R1b-SM-5HL7K
50-59 years, male
59.7
GTEX-13OVJ-0011-R1b-SM-5L3I6
50-59 years, female
59.5
GTEX-16Z82-0011-R1b-SM-7EPHZ
60-69 years, male
59.3
GTEX-16GPK-0011-R1b-SM-7EWDH
60-69 years, male
59.0
GTEX-1GTWX-0011-R1a-SM-CE6RL
60-69 years, male
57.7
GTEX-S7SE-0011-R1A-SM-2XCDE
50-59 years, male
57.5
GTEX-1CB4J-0011-R1a-SM-9WG64
60-69 years, male
57.2
GTEX-14PJO-0011-R1b-SM-6AJAK
60-69 years, male
57.0
GTEX-11EI6-0011-R1a-SM-DO93L
60-69 years, male
57.0
GTEX-NPJ7-0011-R1a-SM-3GACT
60-69 years, female
56.9
GTEX-1H4P4-0011-R1b-SM-CL54V
50-59 years, male
56.5
GTEX-13FHO-0011-R1b-SM-5KLZG
60-69 years, male
56.1
GTEX-1HSMO-0011-R1a-SM-CM2SV
60-69 years, male
55.5
GTEX-14ASI-0011-R1b-SM-5S2TY
60-69 years, male
54.4
GTEX-12WSM-0011-R1a-SM-5LZW6
60-69 years, male
54.2
GTEX-QDT8-0011-R1A-SM-32PKS
30-39 years, female
54.1
GTEX-13OW8-0011-R1a-SM-5L3HI
60-69 years, male
53.8
GTEX-X4XX-0011-R1B-SM-3P622
60-69 years, male
53.4
GTEX-17F97-0011-R1b-SM-7IGM9
50-59 years, male
52.9
GTEX-R55E-0011-R1A-SM-2TC6N
20-29 years, male
52.4
GTEX-1C64N-0011-R1b-SM-7P8Q7
50-59 years, male
52.2
GTEX-UTHO-0011-R1A-SM-3GIJO
60-69 years, male
52.0
GTEX-11ONC-0011-R1a-SM-57WD4
60-69 years, male
51.0
GTEX-Y8DK-0011-R1A-SM-4RGLO
60-69 years, male
50.9
GTEX-132Q8-0011-R1a-SM-5EGLK
60-69 years, male
50.5
GTEX-16NPV-0011-R1b-SM-7MGVZ
50-59 years, female
50.3
GTEX-1GF9V-0011-R1a-SM-CKZNQ
60-69 years, male
50.2
GTEX-1A3MX-0011-R1b-SM-7P8PH
60-69 years, male
50.0
GTEX-11ZTS-0011-R1a-SM-5BC71
60-69 years, female
49.1
GTEX-144GO-0011-R1a-SM-5PNWO
60-69 years, male
48.4
GTEX-1B996-0011-R1b-SM-7P8PO
60-69 years, male
47.8
GTEX-1LG7Y-0011-R1a-SM-EYYWV
50-59 years, male
47.4
GTEX-1J8Q2-0011-R1a-SM-D4P2D
60-69 years, male
46.3
GTEX-13NYS-0011-R1b-SM-5MR55
60-69 years, male
45.6
GTEX-PWO3-0011-R1A-SM-2I5EW
60-69 years, female
44.9
GTEX-YJ89-0011-R1a-SM-4RGLS
60-69 years, male
44.1
GTEX-13OW7-0011-R1b-SM-5L3HF
50-59 years, male
43.9
GTEX-11UD1-0011-R1b-SM-5BC7D
40-49 years, female
43.6
GTEX-13PDP-0011-R1a-SM-5PNX5
60-69 years, male
43.5
GTEX-1HR98-0011-R1a-SM-ARZLQ
60-69 years, male
42.8
GTEX-12WSD-0011-R1b-SM-5LZVY
60-69 years, female
42.7
GTEX-NPJ8-0011-R1a-SM-33HCB
40-49 years, male
42.7
GTEX-ZVZQ-0011-R1a-SM-57WBU
60-69 years, female
42.6
GTEX-13CF2-0011-R1a-SM-5LZY1
60-69 years, male
42.3
GTEX-1EWIQ-0011-R1a-SM-9OSX7
70-79 years, female
41.1
GTEX-1CAV2-0011-R1a-SM-ARZML
40-49 years, female
39.2
GTEX-1H3VE-0011-R1a-SM-A9G1K
40-49 years, male
38.1
GTEX-14BIM-0011-R1a-SM-69LQI
60-69 years, female
37.5
GTEX-13SLW-0011-R1a-SM-5S2W7
70-79 years, male
36.8
GTEX-1399T-0011-R1b-SM-5DUWN
60-69 years, male
36.6
GTEX-13FTY-0011-R1a-SM-5LZXE
40-49 years, female
35.3
GTEX-1A32A-0011-R1a-SM-7P8SQ
50-59 years, female
33.2
GTEX-NL3H-0011-R1a-SM-48TDJ
60-69 years, male
32.7
GTEX-139T8-0011-R1a-SM-5HL75
60-69 years, male
32.2
GTEX-TSE9-0011-R1A-SM-3DB7E
60-69 years, female
29.1
GTEX-13FHP-0011-R1b-SM-5K7XL
50-59 years, male
27.5
GTEX-X4EP-0011-R1A-SM-3P624
60-69 years, female
26.5
GTEX-ZE7O-0011-R1a-SM-57WDM
50-59 years, female
24.7
GTEX-13NZ8-0011-R1b-SM-5KM3V
60-69 years, female
22.9
GTEX-1GZHY-0011-R1a-SM-CE6RR
50-59 years, female
20.3
GTEX-ZF28-0011-R1a-SM-4WWD1
60-69 years, male
18.3
GTEX-OHPN-0011-R1A-SM-2I5GB
60-69 years, female
15.1
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
240.5
Mouse sample
Sample description
nTPM
Entorhinal cortex nTPM: 204.4
Samples: 4
Max nTPM: 229.5
Min nTPM: 172.3
Sample A
Male
172.3
Sample B
Male
208.1
Sample C
Female
229.5
Sample D
Female
207.7
Hippocampal formation nTPM: 240.5
Samples: 4
Max nTPM: 271.4
Min nTPM: 221.3
Sample A
Male
271.4
Sample B
Male
221.3
Sample C
Female
247.3
Sample D
Female
222.0
HIPPOCAMPAL FORMATION - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.