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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
GFRA1 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
5.7
Number of samples
362
Samples
Sample
Description
TPM
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
58.9
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
38.4
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
33.9
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
33.4
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
33.4
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
31.7
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
31.7
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
30.6
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
28.6
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
25.0
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
24.2
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
21.8
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
21.8
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
21.5
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
20.6
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
20.5
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
20.2
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
19.4
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
17.4
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
17.3
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
16.4
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
16.2
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
15.2
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
14.9
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
14.7
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
14.5
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
14.5
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
14.1
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
13.5
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
13.5
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
13.3
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
13.3
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
13.3
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
13.1
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
13.0
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
12.9
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
12.8
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
12.7
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
12.7
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
12.7
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
12.6
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
12.6
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
12.5
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
12.5
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
12.5
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
12.4
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
12.3
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
12.2
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
12.1
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
12.0
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
12.0
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
11.9
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
11.7
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
11.7
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
11.7
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
11.6
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
11.6
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
11.5
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
11.4
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
11.4
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
11.3
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
11.3
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
11.0
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
11.0
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
10.7
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
10.6
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
10.5
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
10.4
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
10.4
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
10.3
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
10.2
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
10.2
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
10.1
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
10.0
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
9.9
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
9.9
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
9.8
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
9.8
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
9.5
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
9.2
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
9.2
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
9.1
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
9.0
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
9.0
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
9.0
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
8.9
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
8.9
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
8.6
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
8.6
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
8.6
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
8.5
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
8.5
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
8.4
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
8.4
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
8.4
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
8.3
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
8.3
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
8.3
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
8.3
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
8.2
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
8.1
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
8.1
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
8.1
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
7.9
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
7.7
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
7.7
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
7.7
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
7.6
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
7.5
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
7.5
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
7.5
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
7.4
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
7.3
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
7.1
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
7.0
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
7.0
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
6.8
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
6.7
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
6.7
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
6.4
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
6.4
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
6.4
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
6.4
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
6.4
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
6.4
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
6.2
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
6.1
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
6.0
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
6.0
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
5.9
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
5.9
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
5.9
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
5.9
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
5.8
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
5.6
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
5.5
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
5.5
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
5.5
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
5.5
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
5.5
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
5.4
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
5.4
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
5.4
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
5.4
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
5.3
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
5.2
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
5.2
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
5.2
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
5.2
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
5.1
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
5.1
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
5.1
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
5.1
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
5.0
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
4.9
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
4.8
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
4.7
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
4.7
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
4.6
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
4.6
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
4.6
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
4.5
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
4.5
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
4.4
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
4.4
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
4.4
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
4.3
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
4.2
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
4.1
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
4.1
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
4.1
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
4.0
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
4.0
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
4.0
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
4.0
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
4.0
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
3.9
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
3.9
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
3.8
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
3.6
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
3.5
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
3.5
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
3.5
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
3.4
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
3.4
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
3.4
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
3.4
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
3.3
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
3.3
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
3.3
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
3.2
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
3.2
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
3.1
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
3.0
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
3.0
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
2.9
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
2.9
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
2.9
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
2.7
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
2.7
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
2.7
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
2.7
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
2.6
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
2.5
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
2.5
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
2.5
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
2.5
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
2.4
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
2.4
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
2.4
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
2.3
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
2.3
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
2.3
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
2.2
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
2.2
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
2.2
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
2.2
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
2.1
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
2.1
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
2.1
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
2.0
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
2.0
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
2.0
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
2.0
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
1.9
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
1.9
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
1.8
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
1.8
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
1.8
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
1.8
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
1.6
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
1.6
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
1.6
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
1.5
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
1.5
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
1.5
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
1.5
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
1.5
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
1.4
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
1.4
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
1.3
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
1.2
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
1.1
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
1.1
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
1.1
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
1.0
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
1.0
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
0.9
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
0.9
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
0.9
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
0.9
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
0.9
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
0.8
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
0.8
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
0.8
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
0.8
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
0.8
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
0.7
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
0.7
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
0.7
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
0.7
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
0.7
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
0.6
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
0.6
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
0.6
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
0.6
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
0.6
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
0.6
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
0.6
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
0.6
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
0.5
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
0.5
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
0.5
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
0.5
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
0.5
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
0.5
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
0.5
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
0.5
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
0.4
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
0.4
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
0.4
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
0.4
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
0.4
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
0.4
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
0.3
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
0.3
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
0.3
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
0.3
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
0.3
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
0.3
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
0.3
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
0.3
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
0.3
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
0.3
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
0.3
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
0.3
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
0.2
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
0.2
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
0.2
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
0.2
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
0.2
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
0.2
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
0.2
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
0.2
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
0.2
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
0.2
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
0.2
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
0.2
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
0.2
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
0.2
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
0.2
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
0.2
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
0.1
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
0.1
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
0.1
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
0.1
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
0.1
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
0.1
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
0.1
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
0.1
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
0.1
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
0.1
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
0.1
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
0.1
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
0.1
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
0.1
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
0.0
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
0.0
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
0.0
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
0.0
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
0.0
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
0.0
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
0.0
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
0.0
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
0.0
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
0.0
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
0.0
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
0.0
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
0.0
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
0.0
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
0.0
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
0.0
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
0.0
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
0.0
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
0.0
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
0.0
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
0.0
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
0.0
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
0.0
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
0.0
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
0.0
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
0.0
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
0.0
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
0.0
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
0.0
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
0.0
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
0.0
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
0.0
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
0.0
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
0.0
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
0.0
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
GFRA1 is potential prognostic, high expression is favorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
2.6
Number of samples
231
Samples
Sample
Description
TPM
DO45209
0 years, male, NA, stage:4, alive, 1350 days
18.3
DO23542
0 years, male, NA, stage:3, alive, 960 days
17.3
DO45129
0 years, male, NA, stage:3, alive, 1470 days
14.1
DO45171
0 years, male, NA, stage:3, alive, 600 days
14.0
DO48695
0 years, male, NA, stage:2, alive, 720 days
13.3
DO50844
0 years, male, NA, stage:4, alive, 300 days
13.3
DO50825
0 years, male, NA, stage:2, alive, 390 days
12.3
DO45217
0 years, female, NA, stage:3, dead, 270 days
10.6
DO45191
0 years, female, NA, stage:2, alive, 1200 days
9.7
DO23539
0 years, male, NA, stage:1, alive, 1110 days
8.9
DO45133
0 years, male, NA, stage:3, dead, 660 days
8.7
DO50859
0 years, male, NA, stage:2, alive, 180 days
8.2
DO48677
0 years, male, NA, stage:3, alive, 1140 days
8.2
DO48715
0 years, female, NA, stage:2, dead, 690 days
8.0
DO45179
0 years, female, NA, stage:2, alive, 600 days
7.4
DO45107
0 years, female, NA, stage:2, alive, 1710 days
7.4
DO50787
0 years, male, NA, stage:3, alive, 480 days
7.2
DO45177
0 years, female, NA, stage:3, alive, 1260 days
7.1
DO23524
0 years, female, NA, stage:2, alive, 1050 days
6.9
DO23536
0 years, male, NA, stage:2, alive, 930 days
6.6
DO45265
0 years, male, NA, stage:3, alive, 1020 days
6.6
DO50789
0 years, female, NA, stage:2, alive, 570 days
6.5
DO45175
0 years, male, NA, stage:2, alive, 1140 days
6.5
DO48727
0 years, female, NA, stage:2, dead, 390 days
6.5
DO50817
0 years, male, NA, stage:2, alive, 390 days
6.4
DO45169
0 years, male, NA, stage:3, alive, 1350 days
6.3
DO23538
0 years, male, NA, stage:2, alive, 450 days
6.2
DO48672
0 years, male, NA, stage:2, alive, 450 days
6.2
DO45239
0 years, male, NA, stage:2, alive, 870 days
6.1
DO45207
0 years, male, NA, stage:1, alive, 1050 days
6.0
DO50822
0 years, male, NA, stage:2, alive, 510 days
6.0
DO23549
0 years, male, NA, stage:3, alive, 990 days
5.8
DO23513
0 years, male, NA, stage:3, alive, 1200 days
5.7
DO50820
0 years, female, NA, stage:3, alive, 510 days
5.4
DO45213
0 years, male, NA, stage:1, alive, 1200 days
5.3
DO48700
0 years, female, NA, stage:2, alive, 810 days
5.2
DO45183
0 years, female, NA, stage:2, dead, 570 days
5.2
DO45096
0 years, male, NA, stage:2, dead, 1290 days
5.1
DO45159
0 years, male, NA, stage:3, alive, 1470 days
5.1
DO23514
0 years, male, NA, stage:2, alive, 1290 days
5.1
DO50818
0 years, male, NA, stage:2, alive, 510 days
5.0
DO48674
0 years, male, NA, stage:2, alive, 1260 days
4.8
DO45115
0 years, male, NA, stage:2, alive, 840 days
4.6
DO48721
0 years, female, NA, stage:1, alive, 900 days
4.6
DO48701
0 years, male, NA, stage:2, alive, 780 days
4.6
DO50783
0 years, male, NA, stage:3, alive, 480 days
4.6
DO45157
0 years, male, NA, stage:2, alive, 1980 days
4.5
DO50855
0 years, male, NA, stage:2, alive, 570 days
4.5
DO50839
0 years, female, NA, stage:3, alive, 330 days
4.4
DO48730
0 years, female, NA, stage:2, alive, 630 days
4.4
DO45153
0 years, female, NA, stage:2, alive, 1380 days
4.4
DO50850
0 years, male, NA, stage:3, alive, 720 days
4.3
DO45094
0 years, male, NA, stage:3, alive, 1650 days
4.3
DO45099
0 years, male, NA, stage:3, alive, 1590 days
4.3
DO48760
0 years, female, NA, stage:2, alive, 690 days
4.1
DO45097
0 years, male, NA, stage:3, alive, 1620 days
4.0
DO50814
0 years, male, NA, stage:3, alive, 420 days
4.0
DO50791
0 years, female, NA, stage:1, dead, 480 days
4.0
DO48743
0 years, female, NA, stage:2, alive, 570 days
4.0
DO50816
0 years, male, NA, stage:2, alive, 390 days
3.9
DO23529
0 years, male, NA, stage:4, alive, 930 days
3.9
DO45121
0 years, male, NA, stage:3, alive, 1530 days
3.9
DO48716
0 years, male, NA, stage:2, alive, 720 days
3.8
DO45131
0 years, male, NA, stage:4, dead, 360 days
3.8
DO50807
0 years, male, NA, stage:1, alive, 540 days
3.7
DO23531
0 years, female, NA, stage:3, alive, 900 days
3.5
DO45149
0 years, female, NA, stage:2, alive, 1260 days
3.4
DO45109
0 years, male, NA, stage:2, alive, 1590 days
3.4
DO45215
0 years, male, NA, stage:2, alive, 1170 days
3.4
DO45163
0 years, male, NA, stage:2, alive, 960 days
3.4
DO50793
0 years, male, NA, stage:4, alive, 540 days
3.4
DO50815
0 years, male, NA, stage:3, alive, 150 days
3.4
DO45103
0 years, male, NA, stage:3, alive, 450 days
3.4
DO45101
0 years, male, NA, stage:2, alive, 1680 days
3.3
DO23534
0 years, male, NA, stage:2, alive, 840 days
3.3
DO45199
0 years, female, NA, stage:2, alive, 1350 days
3.1
DO23543
0 years, male, NA, stage:2, alive, 1020 days
3.0
DO23548
0 years, female, NA, stage:1, alive, 840 days
3.0
DO45155
0 years, male, NA, stage:2, alive, 2160 days
2.9
DO48741
0 years, male, NA, stage:3, alive, 240 days
2.9
DO227643
0 years, male, NA, stage:2, alive, 1260 days
2.9
DO48742
0 years, male, NA, stage:2, alive, 600 days
2.9
DO50809
0 years, male, NA, stage:3, dead, 720 days
2.9
DO48706
0 years, male, NA, stage:2, alive, 870 days
2.8
DO50819
0 years, female, NA, stage:2, alive, 510 days
2.7
DO45281
0 years, male, NA, stage:4, alive, 750 days
2.7
DO48693
0 years, male, NA, stage:2, alive, 900 days
2.7
DO45181
0 years, female, NA, stage:2, alive, 1200 days
2.6
DO45237
0 years, male, NA, stage:2, alive, 900 days
2.5
DO45123
0 years, female, NA, stage:2, dead, 570 days
2.5
DO45235
0 years, female, NA, stage:1, alive, 900 days
2.5
DO48725
0 years, male, NA, stage:1, alive, 780 days
2.5
DO45105
0 years, male, NA, stage:1, alive, 1680 days
2.5
DO23517
0 years, male, NA, stage:2, alive, 1200 days
2.4
DO50802
0 years, male, NA, stage:2, alive, 930 days
2.4
DO23527
0 years, male, NA, stage:1, alive, 1050 days
2.4
DO45167
0 years, male, NA, stage:2, dead, 1440 days
2.3
DO50845
0 years, male, NA, stage:3, alive, 210 days
2.3
DO50857
0 years, male, NA, stage:2, alive, 210 days
2.1
DO23510
0 years, female, NA, stage:2, alive, 870 days
2.1
DO50813
0 years, male, NA, stage:2, alive, 420 days
2.1
DO45261
0 years, male, NA, stage:3, alive, 990 days
2.0
DO48733
0 years, male, NA, stage:2, alive, 600 days
2.0
DO50832
0 years, male, NA, stage:3, alive, 90 days
2.0
DO23525
0 years, male, NA, stage:4, alive, 1050 days
2.0
DO48679
0 years, male, NA, stage:2, alive, 1200 days
2.0
DO23533
0 years, male, NA, stage:2, alive, 900 days
1.9
DO45095
0 years, male, NA, stage:2, alive, 1620 days
1.9
DO50800
0 years, male, NA, stage:2, alive, 510 days
1.9
DO23551
0 years, male, NA, stage:3, dead, 150 days
1.8
DO45231
0 years, male, NA, stage:2, alive, 930 days
1.8
DO45233
0 years, male, NA, stage:3, alive, 900 days
1.8
DO23530
0 years, male, NA, stage:4, dead, 180 days
1.7
DO50774
0 years, female, NA, stage:2, alive, 720 days
1.7
DO227801
0 years, female, NA, stage:1, alive, 660 days
1.6
DO45201
0 years, male, NA, stage:1, alive, 900 days
1.6
DO23515
0 years, male, NA, stage:2, alive, 1230 days
1.6
DO23518
0 years, male, NA, stage:2, alive, 1320 days
1.5
DO45141
0 years, male, NA, stage:2, alive, 1320 days
1.5
DO23544
0 years, male, NA, stage:2, alive, 960 days
1.5
DO48719
0 years, male, NA, stage:2, alive, 690 days
1.5
DO23532
0 years, female, NA, stage:1, alive, 960 days
1.4
DO23535
0 years, male, NA, stage:1, alive, 960 days
1.4
DO45255
0 years, male, NA, stage:3, alive, 720 days
1.4
DO45125
0 years, male, NA, stage:3, alive, 1680 days
1.3
DO23512
0 years, male, NA, stage:1, alive, 1260 days
1.3
DO45245
0 years, female, NA, stage:2, dead, 240 days
1.3
DO48751
0 years, male, NA, stage:2, dead, 480 days
1.3
DO48761
0 years, male, NA, stage:2, alive, 870 days
1.3
DO50804
0 years, male, NA, stage:2, alive, 720 days
1.3
DO45257
0 years, male, NA, stage:3, alive, 810 days
1.3
DO45195
0 years, male, NA, stage:1, alive, 390 days
1.3
DO23528
0 years, female, NA, stage:2, alive, 1020 days
1.1
DO23546
0 years, male, NA, stage:2, alive, 1050 days
1.1
DO23547
0 years, male, NA, stage:1, alive, 1020 days
1.1
DO23541
0 years, male, NA, stage:2, alive, 930 days
1.1
DO45229
0 years, male, NA, stage:1, alive, 990 days
1.1
DO45092
0 years, male, NA, stage:4, dead, 1200 days
1.0
DO48746
0 years, male, NA, stage:3, alive, 570 days
1.0
DO45243
0 years, female, NA, stage:3, alive, 930 days
1.0
DO45135
0 years, male, NA, stage:1, alive, 1410 days
1.0
DO50840
0 years, male, NA, stage:2, alive, 330 days
1.0
DO45223
0 years, male, NA, stage:4, alive, 1020 days
0.9
DO50803
0 years, female, NA, stage:1, alive, 540 days
0.9
DO23511
0 years, female, NA, stage:3, dead, 180 days
0.9
DO23537
0 years, male, NA, stage:2, dead, 900 days
0.9
DO48759
0 years, male, NA, stage:3, alive, 720 days
0.8
DO45173
0 years, male, NA, stage:3, alive, 1170 days
0.8
DO45219
0 years, male, NA, stage:2, alive, 1080 days
0.8
DO45203
0 years, female, NA, stage:2, alive, 1170 days
0.8
DO45119
0 years, male, NA, stage:3, dead, 510 days
0.8
DO45113
0 years, male, NA, stage:3, alive, 1560 days
0.7
DO50776
0 years, male, NA, stage:1, alive, 690 days
0.7
DO23540
0 years, male, NA, stage:1, alive, 750 days
0.7
DO45197
0 years, male, NA, stage:2, alive, 1170 days
0.6
DO45267
0 years, male, NA, stage:3, dead, 570 days
0.6
DO45277
0 years, male, NA, stage:3, alive, 600 days
0.6
DO48712
0 years, male, NA, stage:2, alive, 810 days
0.5
DO48757
0 years, female, NA, stage:3, alive, 480 days
0.5
DO45111
0 years, male, NA, stage:2, alive, 1590 days
0.5
DO48747
0 years, male, NA, stage:3, alive, 540 days
0.4
DO45259
0 years, male, NA, stage:3, alive, 330 days
0.4
DO45275
0 years, male, NA, stage:3, dead, 10 days
0.4
DO45251
0 years, female, NA, stage:2, alive, 900 days
0.4
DO45253
0 years, male, NA, stage:2, alive, 870 days
0.4
DO23545
0 years, male, NA, stage:2, dead, 570 days
0.4
DO45093
0 years, male, NA, stage:2, dead, 720 days
0.3
DO23516
0 years, male, NA, stage:3, dead, 20 days
0.3
DO45249
0 years, male, NA, stage:1, alive, 630 days
0.3
DO45307
0 years, female, NA, stage:4, dead, 240 days
0.3
DO45139
0 years, male, NA, stage:3, alive, 1320 days
0.3
DO45301
0 years, male, NA, stage:2, dead, 1440 days
0.3
DO45221
0 years, female, NA, stage:4, dead, 390 days
0.3
DO45241
0 years, male, NA, stage:1, alive, 1080 days
0.3
DO23526
0 years, male, NA, stage:3, alive, 1050 days
0.3
DO45187
0 years, female, NA, stage:1, alive, 1260 days
0.2
DO23552
0 years, female, NA, stage:1, alive, 810 days
0.2
DO23508
0 years, female, NA, stage:2, alive, 390 days
0.2
DO50798
0 years, male, NA, stage:3, dead, 30 days
0.2
DO45165
0 years, male, NA, stage:2, alive, 690 days
0.2
DO48717
0 years, male, NA, stage:4, dead, 180 days
0.2
DO48720
0 years, female, NA, stage:2, alive, 570 days
0.2
DO45247
0 years, female, NA, stage:2, alive, 210 days
0.2
DO48704
0 years, female, NA, stage:3, alive, 750 days
0.2
DO45161
0 years, male, NA, stage:2, dead, 540 days
0.2
DO45143
0 years, male, NA, stage:3, alive, 1290 days
0.2
DO45091
0 years, male, NA, stage:2, dead, 1320 days
0.1
DO48737
0 years, male, NA, stage:1, alive, 720 days
0.1
DO23550
0 years, male, NA, stage:1, alive, 990 days
0.1
DO45279
0 years, male, NA, stage:3, alive, 1290 days
0.1
DO45185
0 years, male, NA, stage:2, alive, 600 days
0.1
DO45287
0 years, male, NA, stage:1, alive, 390 days
0.1
DO50829
0 years, male, NA, stage:3, alive, 570 days
0.1
DO50799
0 years, female, NA, stage:2, alive, 540 days
0.1
DO45117
0 years, female, NA, stage:2, dead, 1110 days
0.1
DO50805
0 years, male, NA, stage:2, alive, 690 days
0.1
DO45225
0 years, male, NA, stage:1, alive, 1050 days
0.1
DO45263
0 years, male, NA, stage:3, dead, 270 days
0.1
DO45193
0 years, female, NA, stage:4, dead, 120 days
0.1
DO45305
0 years, male, NA, stage:4, alive, 300 days
0.1
DO23509
0 years, male, NA, stage:3, dead, 780 days
0.1
DO23523
0 years, male, NA, stage:3, alive, 1080 days
0.1
DO48728
0 years, female, NA, stage:2, alive, 150 days
0.1
DO48736
0 years, female, NA, stage:1, alive, 600 days
0.1
DO50808
0 years, male, NA, stage:2, alive, 570 days
0.1
DO48681
0 years, male, NA, stage:2, alive, 900 days
0.1
DO45227
0 years, female, NA, stage:2, alive, 1020 days
0.1
DO45211
0 years, male, NA, stage:3, alive, 240 days
0.0
DO50806
0 years, male, NA, stage:4, alive, 540 days
0.0
DO45137
0 years, male, NA, stage:1, alive, 1320 days
0.0
DO45205
0 years, female, NA, stage:2, dead, 90 days
0.0
DO45273
0 years, male, NA, stage:2, alive, 480 days
0.0
DO48732
0 years, male, NA, stage:3, alive, 630 days
0.0
DO48697
0 years, female, NA, stage:2, dead, 810 days
0.0
DO45285
0 years, male, NA, stage:3, alive, 480 days
0.0
DO48723
0 years, male, NA, stage:1, alive, 600 days
0.0
DO45127
0 years, male, NA, stage:3, dead, 420 days
0.0
DO50778
0 years, male, NA, stage:4, alive, 630 days
0.0
DO45283
0 years, male, NA, stage:3, alive, 510 days
0.0
DO50811
0 years, male, NA, stage:1, alive, 450 days
0.0
DO23519
0 years, male, NA, stage:3, alive, 630 days
0.0
DO45303
0 years, female, NA, stage:3, alive, 990 days
0.0
DO45299
0 years, female, NA, stage:1, alive, 1440 days
0.0
DO45189
0 years, female, NA, stage:2, alive, 1200 days
0.0
DO45269
0 years, male, NA, stage:3, alive, 750 days
0.0
DO45297
0 years, female, NA, stage:4, dead, 1260 days
0.0
DO23521
0 years, male, NA, stage:3, alive, 1110 days
0.0
DO48682
0 years, female, NA, stage:3, dead, 120 days
0.0
DO50785
0 years, male, NA, stage:4, dead, 90 days
0.0
DO45289
0 years, female, NA, stage:3, alive, 360 days
0.0
DO45145
0 years, male, NA, stage:3, dead, 60 days
0.0
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
192
Normal
1.8
425
Tumor
1.8
741
Tumor
1.7
737
Tumor
1.6
967
Tumor
1.6
755
Tumor
1.6
261
Tumor
1.6
915
Tumor
1.5
952
Normal
1.3
451
Tumor
1.3
223
Tumor
1.2
271
Tumor
1.2
557
Tumor
1.1
746
Normal
1.1
861
Tumor
1.0
523
Tumor
1.0
1041
Tumor
1.0
515
Tumor
0.9
635
Tumor
0.9
745
Tumor
0.8
368
Normal
0.8
955
Tumor
0.8
813
Tumor
0.8
297
Tumor
0.8
664
Normal
0.8
463
Tumor
0.7
666
Normal
0.7
554
Normal
0.7
981
Tumor
0.7
777
Tumor
0.7
867
Tumor
0.6
526
Normal
0.6
963
Tumor
0.6
648
Normal
0.6
721
Tumor
0.6
413
Tumor
0.6
365
Tumor
0.6
285
Tumor
0.6
1025
Tumor
0.6
436
Normal
0.5
147
Tumor
0.5
545
Tumor
0.5
911
Tumor
0.5
362
Normal
0.4
1015
Tumor
0.4
816
Normal
0.4
298
Normal
0.4
685
Tumor
0.4
778
Normal
0.4
914
Normal
0.4
343
Tumor
0.4
162
Normal
0.4
663
Tumor
0.3
376
Normal
0.3
672
Normal
0.3
186
Normal
0.3
728
Normal
0.3
231
Tumor
0.3
497
Tumor
0.3
878
Normal
0.3
514
Normal
0.3
977
Tumor
0.3
452
Normal
0.3
461
Tumor
0.3
443
Tumor
0.3
278
Normal
0.3
615
Tumor
0.3
277
Tumor
0.3
744
Normal
0.2
272
Normal
0.2
662
Normal
0.2
492
Normal
0.2
312
Normal
0.2
195
Tumor
0.2
191
Tumor
0.2
196
Normal
0.2
262
Normal
0.2
568
Normal
0.1
882
Normal
0.1
696
Normal
0.1
361
Tumor
0.1
1014
Normal
0.1
984
Normal
0.1
366
Normal
0.1
923
Tumor
0.1
218
Normal
0.1
884
Normal
0.1
474
Normal
0.1
171
Tumor
0.1
258
Normal
0.1
211
Tumor
0.1
445
Tumor
0.1
148
Normal
0.1
572
Normal
0.1
426
Normal
0.1
1016
Normal
0.1
686
Normal
0.1
267
Tumor
0.1
966
Normal
0.1
823
Tumor
0.1
332
Normal
0.1
738
Normal
0.1
431
Tumor
0.0
455
Tumor
0.0
912
Normal
0.0
434
Normal
0.0
574
Normal
0.0
422
Normal
0.0
484
Normal
0.0
1027
Tumor
0.0
924
Normal
0.0
978
Normal
0.0
187
Tumor
0.0
538
Normal
0.0
943
Tumor
0.0
617
Tumor
0.0
172
Normal
0.0
188
Normal
0.0
716
Normal
0.0
424
Normal
-0.1
232
Normal
-0.1
714
Normal
-0.1
222
Normal
-0.1
873
Tumor
-0.1
874
Normal
-0.1
214
Normal
-0.1
493
Tumor
-0.1
982
Normal
-0.1
483
Tumor
-0.1
428
Normal
-0.1
314
Normal
-0.1
494
Normal
-0.1
916
Normal
-0.1
627
Tumor
-0.2
384
Normal
-0.2
217
Tumor
-0.2
473
Tumor
-0.2
518
Normal
-0.2
524
Normal
-0.2
534
Normal
-0.2
558
Normal
-0.2
863
Tumor
-0.2
956
Normal
-0.2
723
Tumor
-0.2
918
Normal
-0.2
868
Normal
-0.2
185
Tumor
-0.2
642
Normal
-0.3
268
Normal
-0.3
446
Normal
-0.3
481
Tumor
-0.3
311
Tumor
-0.3
862
Normal
-0.3
213
Tumor
-0.3
1026
Normal
-0.3
517
Tumor
-0.3
344
Normal
-0.3
421
Tumor
-0.3
618
Normal
-0.3
414
Normal
-0.3
564
Normal
-0.4
866
Normal
-0.4
1028
Normal
-0.4
331
Tumor
-0.4
922
Normal
-0.4
636
Normal
-0.4
628
Normal
-0.4
665
Tumor
-0.4
814
Normal
-0.4
742
Normal
-0.4
616
Normal
-0.4
472
Normal
-0.4
983
Tumor
-0.4
722
Normal
-0.4
464
Normal
-0.4
516
Normal
-0.4
913
Tumor
-0.4
968
Normal
-0.4
661
Tumor
-0.4
488
Normal
-0.4
513
Tumor
-0.4
423
Tumor
-0.4
546
Normal
-0.5
864
Normal
-0.5
466
Normal
-0.5
456
Normal
-0.5
926
Normal
-0.5
161
Tumor
-0.5
257
Tumor
-0.5
498
Normal
-0.5
432
Normal
-0.5
857
Tumor
-0.5
352
Normal
-0.6
851
Tumor
-0.6
786
Normal
-0.6
815
Tumor
-0.6
865
Tumor
-0.6
641
Tumor
-0.6
383
Tumor
-0.6
957
Tumor
-0.6
487
Tumor
-0.6
444
Normal
-0.6
482
Normal
-0.7
785
Tumor
-0.7
358
Normal
-0.7
938
Normal
-0.7
925
Tumor
-0.7
917
Tumor
-0.7
756
Normal
-0.7
937
Tumor
-0.7
727
Tumor
-0.7
537
Tumor
-0.7
491
Tumor
-0.7
528
Normal
-0.7
462
Normal
-0.7
877
Tumor
-0.8
477
Tumor
-0.8
883
Tumor
-0.8
468
Normal
-0.8
527
Tumor
-0.8
353
Tumor
-0.8
976
Normal
-0.9
533
Tumor
-0.9
921
Tumor
-0.9
313
Tumor
-0.9
1022
Normal
-0.9
824
Normal
-0.9
553
Tumor
-0.9
1042
Normal
-0.9
342
Normal
-0.9
427
Tumor
-0.9
525
Tumor
-0.9
1013
Tumor
-0.9
367
Tumor
-0.9
567
Tumor
-0.9
221
Tumor
-1.0
286
Normal
-1.0
964
Normal
-1.0
563
Tumor
-1.0
1021
Tumor
-1.0
283
Tumor
-1.0
467
Tumor
-1.0
354
Normal
-1.0
881
Tumor
-1.1
471
Tumor
-1.1
478
Normal
-1.1
858
Normal
-1.1
224
Normal
-1.1
715
Tumor
-1.1
341
Tumor
-1.1
713
Tumor
-1.1
228
Normal
-1.1
435
Tumor
-1.1
1031
Tumor
-1.1
357
Tumor
-1.2
852
Normal
-1.2
375
Tumor
-1.2
212
Normal
-1.2
571
Tumor
-1.2
227
Tumor
-1.2
1032
Normal
-1.2
975
Tumor
-1.2
695
Tumor
-1.3
944
Normal
-1.3
284
Normal
-1.3
724
Normal
-1.3
573
Tumor
-1.3
465
Tumor
-1.4
958
Normal
-1.4
818
Normal
-1.4
671
Tumor
-1.4
953
Tumor
-1.5
433
Tumor
-1.5
817
Tumor
-1.6
647
Tumor
-1.9
351
Tumor
-2.0
743
Tumor
-2.0
954
Normal
-2.1
965
Tumor
-2.3
951
Tumor
-3.0
111
Normal
N/A
112
Tumor
N/A
113
Tumor
N/A
355
Tumor
N/A
114
Normal
N/A
356
Normal
N/A
363
Tumor
N/A
364
Normal
N/A
123
Tumor
N/A
124
Normal
N/A
125
Tumor
N/A
126
Normal
N/A
127
Tumor
N/A
128
Normal
N/A
131
Tumor
N/A
132
Normal
N/A
135
Tumor
N/A
136
Normal
N/A
137
Tumor
N/A
138
Normal
N/A
141
Tumor
N/A
142
Normal
N/A
385
Tumor
N/A
386
Normal
N/A
145
Tumor
N/A
387
Tumor
N/A
146
Normal
N/A
388
Normal
N/A
391
Tumor
N/A
392
Normal
N/A
393
Tumor
N/A
394
Normal
N/A
395
Tumor
N/A
396
Normal
N/A
1044
Normal
N/A
1043
Tumor
N/A
1046
Normal
N/A
1045
Tumor
N/A
411
Tumor
N/A
412
Normal
N/A
535
Tumor
N/A
415
Tumor
N/A
536
Normal
N/A
416
Normal
N/A
447
Tumor
N/A
327
Tumor
N/A
448
Normal
N/A
328
Normal
N/A
697
Tumor
N/A
698
Normal
N/A
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
