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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
TDO2 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
87.1
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
520.5
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
504.4
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
488.4
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
478.9
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
421.7
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
411.2
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
385.4
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
378.7
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
356.8
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
352.2
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
343.4
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
332.4
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
320.3
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
314.0
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
299.9
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
296.8
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
289.5
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
287.9
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
284.0
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
279.9
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
270.7
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
270.3
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
266.4
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
262.6
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
262.5
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
259.9
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
258.2
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
244.8
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
243.3
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
242.1
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
241.2
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
238.9
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
238.6
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
232.8
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
230.0
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
226.9
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
225.8
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
222.8
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
219.5
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
216.1
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
213.6
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
212.3
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
207.6
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
207.3
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
207.2
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
203.8
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
198.5
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
194.9
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
192.8
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
192.2
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
191.0
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
190.5
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
187.8
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
187.2
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
186.9
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
179.2
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
175.2
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
174.4
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
172.9
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
172.5
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
171.7
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
168.4
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
167.1
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
165.6
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
163.4
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
162.6
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
161.3
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
161.2
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
160.6
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
159.6
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
157.9
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
157.4
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
156.5
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
155.1
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
154.6
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
153.8
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
152.9
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
152.4
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
152.2
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
151.6
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
150.9
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
147.4
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
145.8
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
145.6
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
144.3
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
144.2
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
143.1
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
143.0
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
143.0
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
143.0
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
142.5
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
141.9
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
141.2
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
137.2
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
137.1
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
136.9
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
136.2
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
135.9
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
134.7
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
128.1
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
124.7
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
119.5
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
119.2
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
118.8
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
116.5
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
115.5
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
114.5
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
113.9
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
113.6
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
113.6
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
111.4
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
108.3
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
107.3
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
106.4
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
106.2
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
102.7
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
101.0
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
100.5
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
99.7
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
99.6
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
98.4
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
97.6
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
95.9
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
95.7
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
95.5
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
95.3
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
93.5
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
92.8
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
89.7
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
89.0
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
88.4
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
88.0
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
87.7
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
86.5
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
86.5
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
85.3
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
83.1
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
82.8
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
82.8
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
82.4
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
82.4
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
82.0
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
81.7
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
79.9
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
77.5
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
76.8
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
76.6
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
74.1
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
74.0
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
72.9
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
72.2
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
71.8
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
70.8
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
70.7
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
70.1
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
69.8
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
69.5
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
69.1
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
68.4
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
68.3
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
68.0
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
67.1
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
67.0
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
66.5
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
65.2
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
64.7
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
64.6
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
63.5
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
63.0
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
62.9
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
62.2
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
61.7
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
60.7
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
59.7
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
59.7
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
59.2
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
58.5
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
56.8
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
54.5
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
54.1
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
53.8
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
53.4
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
52.3
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
52.3
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
52.0
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
51.5
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
51.1
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
51.0
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
51.0
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
50.8
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
49.6
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
48.5
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
47.7
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
46.3
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
45.8
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
45.0
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
44.5
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
44.4
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
43.7
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
43.3
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
40.6
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
40.0
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
39.8
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
38.8
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
38.0
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
37.5
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
36.4
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
33.3
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
32.0
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
31.8
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
31.1
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
30.6
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
30.2
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
29.8
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
29.7
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
27.9
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
27.5
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
27.5
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
27.1
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
27.0
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
26.9
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
26.8
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
26.7
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
25.5
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
25.2
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
25.1
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
24.7
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
23.7
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
23.0
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
22.6
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
21.9
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
21.7
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
21.3
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
20.8
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
20.1
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
19.8
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
19.1
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
18.7
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
18.4
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
18.3
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
17.2
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
16.3
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
16.2
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
15.9
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
15.9
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
15.3
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
15.0
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
14.6
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
14.4
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
14.3
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
14.0
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
13.4
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
13.3
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
13.2
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
13.1
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
12.7
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
12.6
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
12.5
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
12.3
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
12.1
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
11.9
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
11.4
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
10.7
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
10.7
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
10.5
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
10.2
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
10.0
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
9.0
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
9.0
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
8.8
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
8.6
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
8.4
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
8.2
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
8.1
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
7.5
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
7.3
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
7.2
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
7.1
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
7.0
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
6.9
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
6.8
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
6.7
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
6.7
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
6.7
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
6.6
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
6.5
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
6.5
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
5.2
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
4.8
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
4.7
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
4.6
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
4.6
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
4.5
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
4.5
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
4.4
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
4.3
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
4.2
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
4.2
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
4.1
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
3.9
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
3.8
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
3.8
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
3.7
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
3.5
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
3.4
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
3.3
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
3.2
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
3.1
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
3.1
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
2.9
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
2.8
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
2.7
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
2.7
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
2.7
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
2.6
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
2.4
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
2.3
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
2.3
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
2.3
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
2.3
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
2.2
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
2.1
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
2.1
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
2.0
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
2.0
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
1.9
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
1.9
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
1.8
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
1.8
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
1.8
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
1.6
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
1.6
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
1.5
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
1.5
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
1.5
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
1.5
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
1.3
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
1.3
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
1.3
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
1.1
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
1.1
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
1.1
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
1.0
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
1.0
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
1.0
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
1.0
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
0.9
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
0.8
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
0.7
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
0.7
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
0.7
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
0.6
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
0.6
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
0.6
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
0.4
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
0.4
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
0.4
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
0.3
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
0.3
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
0.3
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
0.2
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
TDO2 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
137.8
Number of samples
231
Samples
Sample
Description
TPM
DO23538
0 years, male, NA, stage:2, alive, 450 days
672.7
DO45181
0 years, female, NA, stage:2, alive, 1200 days
581.0
DO45195
0 years, male, NA, stage:1, alive, 390 days
571.7
DO23531
0 years, female, NA, stage:3, alive, 900 days
556.3
DO50803
0 years, female, NA, stage:1, alive, 540 days
541.6
DO23518
0 years, male, NA, stage:2, alive, 1320 days
525.9
DO48742
0 years, male, NA, stage:2, alive, 600 days
517.1
DO45107
0 years, female, NA, stage:2, alive, 1710 days
513.8
DO50809
0 years, male, NA, stage:3, dead, 720 days
499.0
DO48727
0 years, female, NA, stage:2, dead, 390 days
492.8
DO45223
0 years, male, NA, stage:4, alive, 1020 days
485.7
DO45094
0 years, male, NA, stage:3, alive, 1650 days
483.0
DO50774
0 years, female, NA, stage:2, alive, 720 days
477.3
DO45143
0 years, male, NA, stage:3, alive, 1290 days
461.8
DO227801
0 years, female, NA, stage:1, alive, 660 days
454.1
DO45235
0 years, female, NA, stage:1, alive, 900 days
449.0
DO45263
0 years, male, NA, stage:3, dead, 270 days
435.8
DO48760
0 years, female, NA, stage:2, alive, 690 days
423.1
DO45177
0 years, female, NA, stage:3, alive, 1260 days
419.4
DO45101
0 years, male, NA, stage:2, alive, 1680 days
404.5
DO45191
0 years, female, NA, stage:2, alive, 1200 days
400.7
DO23541
0 years, male, NA, stage:2, alive, 930 days
389.3
DO48674
0 years, male, NA, stage:2, alive, 1260 days
369.3
DO45096
0 years, male, NA, stage:2, dead, 1290 days
360.5
DO45099
0 years, male, NA, stage:3, alive, 1590 days
360.2
DO45153
0 years, female, NA, stage:2, alive, 1380 days
348.5
DO227643
0 years, male, NA, stage:2, alive, 1260 days
340.7
DO48700
0 years, female, NA, stage:2, alive, 810 days
331.7
DO45247
0 years, female, NA, stage:2, alive, 210 days
321.4
DO45233
0 years, male, NA, stage:3, alive, 900 days
318.3
DO23527
0 years, male, NA, stage:1, alive, 1050 days
315.1
DO48682
0 years, female, NA, stage:3, dead, 120 days
300.9
DO50787
0 years, male, NA, stage:3, alive, 480 days
294.9
DO45165
0 years, male, NA, stage:2, alive, 690 days
293.8
DO45115
0 years, male, NA, stage:2, alive, 840 days
293.1
DO50776
0 years, male, NA, stage:1, alive, 690 days
290.7
DO45135
0 years, male, NA, stage:1, alive, 1410 days
286.2
DO23510
0 years, female, NA, stage:2, alive, 870 days
285.3
DO23524
0 years, female, NA, stage:2, alive, 1050 days
284.4
DO23525
0 years, male, NA, stage:4, alive, 1050 days
282.9
DO50807
0 years, male, NA, stage:1, alive, 540 days
280.8
DO45179
0 years, female, NA, stage:2, alive, 600 days
280.3
DO23551
0 years, male, NA, stage:3, dead, 150 days
278.5
DO50857
0 years, male, NA, stage:2, alive, 210 days
269.9
DO50850
0 years, male, NA, stage:3, alive, 720 days
259.1
DO48716
0 years, male, NA, stage:2, alive, 720 days
248.4
DO45167
0 years, male, NA, stage:2, dead, 1440 days
244.6
DO45231
0 years, male, NA, stage:2, alive, 930 days
241.1
DO50829
0 years, male, NA, stage:3, alive, 570 days
227.3
DO45125
0 years, male, NA, stage:3, alive, 1680 days
225.7
DO23545
0 years, male, NA, stage:2, dead, 570 days
223.4
DO23517
0 years, male, NA, stage:2, alive, 1200 days
218.9
DO45215
0 years, male, NA, stage:2, alive, 1170 days
212.3
DO50818
0 years, male, NA, stage:2, alive, 510 days
210.4
DO45269
0 years, male, NA, stage:3, alive, 750 days
196.5
DO23512
0 years, male, NA, stage:1, alive, 1260 days
194.0
DO45261
0 years, male, NA, stage:3, alive, 990 days
185.3
DO50791
0 years, female, NA, stage:1, dead, 480 days
182.6
DO50798
0 years, male, NA, stage:3, dead, 30 days
182.3
DO45109
0 years, male, NA, stage:2, alive, 1590 days
180.4
DO50811
0 years, male, NA, stage:1, alive, 450 days
178.8
DO23544
0 years, male, NA, stage:2, alive, 960 days
178.4
DO48751
0 years, male, NA, stage:2, dead, 480 days
177.9
DO48717
0 years, male, NA, stage:4, dead, 180 days
176.3
DO50840
0 years, male, NA, stage:2, alive, 330 days
175.8
DO48761
0 years, male, NA, stage:2, alive, 870 days
174.1
DO45119
0 years, male, NA, stage:3, dead, 510 days
174.0
DO45159
0 years, male, NA, stage:3, alive, 1470 days
171.2
DO48721
0 years, female, NA, stage:1, alive, 900 days
168.5
DO48747
0 years, male, NA, stage:3, alive, 540 days
167.3
DO23514
0 years, male, NA, stage:2, alive, 1290 days
165.0
DO50822
0 years, male, NA, stage:2, alive, 510 days
162.3
DO48733
0 years, male, NA, stage:2, alive, 600 days
156.7
DO45157
0 years, male, NA, stage:2, alive, 1980 days
156.1
DO50805
0 years, male, NA, stage:2, alive, 690 days
156.1
DO23542
0 years, male, NA, stage:3, alive, 960 days
151.3
DO48701
0 years, male, NA, stage:2, alive, 780 days
149.5
DO50808
0 years, male, NA, stage:2, alive, 570 days
149.1
DO48693
0 years, male, NA, stage:2, alive, 900 days
147.7
DO50804
0 years, male, NA, stage:2, alive, 720 days
145.2
DO45187
0 years, female, NA, stage:1, alive, 1260 days
142.5
DO45255
0 years, male, NA, stage:3, alive, 720 days
142.2
DO45139
0 years, male, NA, stage:3, alive, 1320 days
135.7
DO45105
0 years, male, NA, stage:1, alive, 1680 days
135.0
DO50789
0 years, female, NA, stage:2, alive, 570 days
132.7
DO45227
0 years, female, NA, stage:2, alive, 1020 days
131.4
DO45201
0 years, male, NA, stage:1, alive, 900 days
128.0
DO23534
0 years, male, NA, stage:2, alive, 840 days
127.6
DO23528
0 years, female, NA, stage:2, alive, 1020 days
127.6
DO45173
0 years, male, NA, stage:3, alive, 1170 days
122.8
DO45183
0 years, female, NA, stage:2, dead, 570 days
122.1
DO45113
0 years, male, NA, stage:3, alive, 1560 days
121.7
DO45283
0 years, male, NA, stage:3, alive, 510 days
120.8
DO45137
0 years, male, NA, stage:1, alive, 1320 days
119.6
DO45257
0 years, male, NA, stage:3, alive, 810 days
119.4
DO50793
0 years, male, NA, stage:4, alive, 540 days
119.1
DO45203
0 years, female, NA, stage:2, alive, 1170 days
119.0
DO45155
0 years, male, NA, stage:2, alive, 2160 days
118.8
DO23515
0 years, male, NA, stage:2, alive, 1230 days
117.7
DO45097
0 years, male, NA, stage:3, alive, 1620 days
115.0
DO45273
0 years, male, NA, stage:2, alive, 480 days
112.6
DO45123
0 years, female, NA, stage:2, dead, 570 days
110.8
DO48743
0 years, female, NA, stage:2, alive, 570 days
107.4
DO48730
0 years, female, NA, stage:2, alive, 630 days
106.6
DO48759
0 years, male, NA, stage:3, alive, 720 days
106.1
DO23540
0 years, male, NA, stage:1, alive, 750 days
105.8
DO45209
0 years, male, NA, stage:4, alive, 1350 days
105.2
DO50820
0 years, female, NA, stage:3, alive, 510 days
104.3
DO23546
0 years, male, NA, stage:2, alive, 1050 days
99.6
DO45141
0 years, male, NA, stage:2, alive, 1320 days
99.6
DO50845
0 years, male, NA, stage:3, alive, 210 days
95.1
DO23532
0 years, female, NA, stage:1, alive, 960 days
94.9
DO45229
0 years, male, NA, stage:1, alive, 990 days
93.4
DO23536
0 years, male, NA, stage:2, alive, 930 days
91.9
DO45225
0 years, male, NA, stage:1, alive, 1050 days
91.6
DO45111
0 years, male, NA, stage:2, alive, 1590 days
91.0
DO45243
0 years, female, NA, stage:3, alive, 930 days
87.7
DO45095
0 years, male, NA, stage:2, alive, 1620 days
87.1
DO48677
0 years, male, NA, stage:3, alive, 1140 days
83.3
DO45265
0 years, male, NA, stage:3, alive, 1020 days
82.8
DO45205
0 years, female, NA, stage:2, dead, 90 days
82.4
DO45217
0 years, female, NA, stage:3, dead, 270 days
78.8
DO48741
0 years, male, NA, stage:3, alive, 240 days
77.7
DO45169
0 years, male, NA, stage:3, alive, 1350 days
77.3
DO23521
0 years, male, NA, stage:3, alive, 1110 days
71.1
DO45197
0 years, male, NA, stage:2, alive, 1170 days
70.1
DO45163
0 years, male, NA, stage:2, alive, 960 days
68.8
DO48712
0 years, male, NA, stage:2, alive, 810 days
68.5
DO48704
0 years, female, NA, stage:3, alive, 750 days
67.3
DO23519
0 years, male, NA, stage:3, alive, 630 days
66.1
DO45133
0 years, male, NA, stage:3, dead, 660 days
65.8
DO48746
0 years, male, NA, stage:3, alive, 570 days
65.8
DO45103
0 years, male, NA, stage:3, alive, 450 days
65.3
DO23535
0 years, male, NA, stage:1, alive, 960 days
64.6
DO50800
0 years, male, NA, stage:2, alive, 510 days
64.0
DO50859
0 years, male, NA, stage:2, alive, 180 days
63.7
DO50817
0 years, male, NA, stage:2, alive, 390 days
62.7
DO50825
0 years, male, NA, stage:2, alive, 390 days
62.2
DO45092
0 years, male, NA, stage:4, dead, 1200 days
60.2
DO48728
0 years, female, NA, stage:2, alive, 150 days
55.6
DO50813
0 years, male, NA, stage:2, alive, 420 days
54.9
DO48706
0 years, male, NA, stage:2, alive, 870 days
52.3
DO45207
0 years, male, NA, stage:1, alive, 1050 days
50.5
DO45267
0 years, male, NA, stage:3, dead, 570 days
49.1
DO48736
0 years, female, NA, stage:1, alive, 600 days
48.9
DO23550
0 years, male, NA, stage:1, alive, 990 days
47.3
DO50839
0 years, female, NA, stage:3, alive, 330 days
46.4
DO50785
0 years, male, NA, stage:4, dead, 90 days
46.2
DO48695
0 years, male, NA, stage:2, alive, 720 days
45.1
DO50832
0 years, male, NA, stage:3, alive, 90 days
44.6
DO50819
0 years, female, NA, stage:2, alive, 510 days
42.8
DO45253
0 years, male, NA, stage:2, alive, 870 days
42.3
DO50815
0 years, male, NA, stage:3, alive, 150 days
39.7
DO45221
0 years, female, NA, stage:4, dead, 390 days
39.5
DO45129
0 years, male, NA, stage:3, alive, 1470 days
37.8
DO45171
0 years, male, NA, stage:3, alive, 600 days
35.3
DO50806
0 years, male, NA, stage:4, alive, 540 days
34.3
DO45251
0 years, female, NA, stage:2, alive, 900 days
33.9
DO45213
0 years, male, NA, stage:1, alive, 1200 days
32.7
DO45241
0 years, male, NA, stage:1, alive, 1080 days
31.4
DO45219
0 years, male, NA, stage:2, alive, 1080 days
30.5
DO48720
0 years, female, NA, stage:2, alive, 570 days
30.1
DO23513
0 years, male, NA, stage:3, alive, 1200 days
29.9
DO23509
0 years, male, NA, stage:3, dead, 780 days
29.7
DO45287
0 years, male, NA, stage:1, alive, 390 days
28.9
DO23530
0 years, male, NA, stage:4, dead, 180 days
28.8
DO23543
0 years, male, NA, stage:2, alive, 1020 days
27.3
DO48715
0 years, female, NA, stage:2, dead, 690 days
25.6
DO48723
0 years, male, NA, stage:1, alive, 600 days
25.0
DO50802
0 years, male, NA, stage:2, alive, 930 days
24.9
DO45131
0 years, male, NA, stage:4, dead, 360 days
23.9
DO50799
0 years, female, NA, stage:2, alive, 540 days
23.6
DO23508
0 years, female, NA, stage:2, alive, 390 days
23.2
DO48725
0 years, male, NA, stage:1, alive, 780 days
22.6
DO45149
0 years, female, NA, stage:2, alive, 1260 days
22.5
DO48697
0 years, female, NA, stage:2, dead, 810 days
20.8
DO23526
0 years, male, NA, stage:3, alive, 1050 days
20.7
DO48679
0 years, male, NA, stage:2, alive, 1200 days
20.1
DO45185
0 years, male, NA, stage:2, alive, 600 days
19.9
DO23547
0 years, male, NA, stage:1, alive, 1020 days
19.2
DO45249
0 years, male, NA, stage:1, alive, 630 days
19.1
DO45239
0 years, male, NA, stage:2, alive, 870 days
18.8
DO50816
0 years, male, NA, stage:2, alive, 390 days
18.4
DO45121
0 years, male, NA, stage:3, alive, 1530 days
18.3
DO45259
0 years, male, NA, stage:3, alive, 330 days
18.2
DO45093
0 years, male, NA, stage:2, dead, 720 days
18.2
DO50855
0 years, male, NA, stage:2, alive, 570 days
17.0
DO23552
0 years, female, NA, stage:1, alive, 810 days
16.9
DO48732
0 years, male, NA, stage:3, alive, 630 days
16.5
DO45281
0 years, male, NA, stage:4, alive, 750 days
14.6
DO45275
0 years, male, NA, stage:3, dead, 10 days
13.9
DO48737
0 years, male, NA, stage:1, alive, 720 days
12.9
DO23539
0 years, male, NA, stage:1, alive, 1110 days
12.5
DO45189
0 years, female, NA, stage:2, alive, 1200 days
12.1
DO23548
0 years, female, NA, stage:1, alive, 840 days
11.9
DO45237
0 years, male, NA, stage:2, alive, 900 days
11.6
DO50778
0 years, male, NA, stage:4, alive, 630 days
10.8
DO45161
0 years, male, NA, stage:2, dead, 540 days
10.4
DO45091
0 years, male, NA, stage:2, dead, 1320 days
9.9
DO45301
0 years, male, NA, stage:2, dead, 1440 days
8.7
DO23549
0 years, male, NA, stage:3, alive, 990 days
8.5
DO45211
0 years, male, NA, stage:3, alive, 240 days
8.4
DO50814
0 years, male, NA, stage:3, alive, 420 days
8.2
DO23516
0 years, male, NA, stage:3, dead, 20 days
7.1
DO50844
0 years, male, NA, stage:4, alive, 300 days
6.8
DO45277
0 years, male, NA, stage:3, alive, 600 days
6.7
DO45279
0 years, male, NA, stage:3, alive, 1290 days
6.1
DO48681
0 years, male, NA, stage:2, alive, 900 days
6.1
DO45305
0 years, male, NA, stage:4, alive, 300 days
4.6
DO45307
0 years, female, NA, stage:4, dead, 240 days
3.4
DO48757
0 years, female, NA, stage:3, alive, 480 days
3.4
DO48672
0 years, male, NA, stage:2, alive, 450 days
3.3
DO48719
0 years, male, NA, stage:2, alive, 690 days
3.2
DO45193
0 years, female, NA, stage:4, dead, 120 days
3.1
DO45175
0 years, male, NA, stage:2, alive, 1140 days
2.8
DO23537
0 years, male, NA, stage:2, dead, 900 days
2.6
DO50783
0 years, male, NA, stage:3, alive, 480 days
2.6
DO45297
0 years, female, NA, stage:4, dead, 1260 days
2.5
DO23533
0 years, male, NA, stage:2, alive, 900 days
2.4
DO23529
0 years, male, NA, stage:4, alive, 930 days
2.2
DO45285
0 years, male, NA, stage:3, alive, 480 days
2.0
DO45127
0 years, male, NA, stage:3, dead, 420 days
2.0
DO23523
0 years, male, NA, stage:3, alive, 1080 days
1.7
DO45289
0 years, female, NA, stage:3, alive, 360 days
1.6
DO45299
0 years, female, NA, stage:1, alive, 1440 days
1.6
DO45303
0 years, female, NA, stage:3, alive, 990 days
1.4
DO45245
0 years, female, NA, stage:2, dead, 240 days
1.2
DO23511
0 years, female, NA, stage:3, dead, 180 days
1.1
DO45117
0 years, female, NA, stage:2, dead, 1110 days
0.5
DO45199
0 years, female, NA, stage:2, alive, 1350 days
0.4
DO45145
0 years, male, NA, stage:3, dead, 60 days
0.3
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
342
Normal
1.6
467
Tumor
1.4
968
Normal
1.4
984
Normal
1.2
482
Normal
1.2
426
Normal
1.1
466
Normal
1.1
728
Normal
1.1
1014
Normal
1.1
113
Tumor
1.0
554
Normal
1.0
352
Normal
1.0
816
Normal
1.0
432
Normal
1.0
145
Tumor
1.0
446
Normal
1.0
422
Normal
0.9
298
Normal
0.9
648
Normal
0.9
223
Tumor
0.9
228
Normal
0.9
636
Normal
0.9
428
Normal
0.9
148
Normal
0.9
628
Normal
0.9
664
Normal
0.9
572
Normal
0.9
424
Normal
0.8
344
Normal
0.8
866
Normal
0.8
778
Normal
0.8
232
Normal
0.8
353
Tumor
0.8
714
Normal
0.8
172
Normal
0.8
716
Normal
0.7
268
Normal
0.7
954
Normal
0.7
742
Normal
0.7
376
Normal
0.7
698
Normal
0.7
358
Normal
0.7
284
Normal
0.7
1044
Normal
0.7
488
Normal
0.7
922
Normal
0.7
574
Normal
0.7
278
Normal
0.7
394
Normal
0.7
786
Normal
0.7
1032
Normal
0.7
956
Normal
0.7
262
Normal
0.7
914
Normal
0.7
964
Normal
0.7
884
Normal
0.7
926
Normal
0.6
1022
Normal
0.6
722
Normal
0.6
982
Normal
0.6
494
Normal
0.6
111
Normal
0.6
218
Normal
0.6
474
Normal
0.6
966
Normal
0.6
864
Normal
0.6
414
Normal
0.6
746
Normal
0.6
744
Normal
0.6
258
Normal
0.6
862
Normal
0.6
448
Normal
0.6
738
Normal
0.6
421
Tumor
0.6
356
Normal
0.6
468
Normal
0.6
913
Tumor
0.6
868
Normal
0.6
858
Normal
0.6
416
Normal
0.6
444
Normal
0.6
136
Normal
0.5
1026
Normal
0.5
412
Normal
0.5
452
Normal
0.5
514
Normal
0.5
564
Normal
0.5
368
Normal
0.5
686
Normal
0.5
314
Normal
0.5
224
Normal
0.5
464
Normal
0.5
196
Normal
0.5
955
Tumor
0.5
912
Normal
0.5
818
Normal
0.5
568
Normal
0.5
937
Tumor
0.5
396
Normal
0.5
878
Normal
0.5
462
Normal
0.5
188
Normal
0.5
186
Normal
0.5
487
Tumor
0.5
976
Normal
0.5
1042
Normal
0.5
526
Normal
0.5
384
Normal
0.4
388
Normal
0.4
616
Normal
0.4
114
Normal
0.4
222
Normal
0.4
128
Normal
0.4
456
Normal
0.4
851
Tumor
0.4
534
Normal
0.4
126
Normal
0.4
286
Normal
0.4
392
Normal
0.4
1028
Normal
0.4
528
Normal
0.4
137
Tumor
0.4
723
Tumor
0.4
364
Normal
0.4
138
Normal
0.4
363
Tumor
0.4
187
Tumor
0.4
938
Normal
0.4
436
Normal
0.4
362
Normal
0.4
1016
Normal
0.4
227
Tumor
0.4
272
Normal
0.3
546
Normal
0.3
132
Normal
0.3
524
Normal
0.3
952
Normal
0.3
162
Normal
0.3
978
Normal
0.3
332
Normal
0.3
312
Normal
0.3
214
Normal
0.3
824
Normal
0.3
538
Normal
0.3
518
Normal
0.3
958
Normal
0.2
558
Normal
0.2
498
Normal
0.2
142
Normal
0.2
484
Normal
0.2
666
Normal
0.2
756
Normal
0.2
341
Tumor
0.2
124
Normal
0.2
386
Normal
0.2
721
Tumor
0.2
918
Normal
0.2
146
Normal
0.2
672
Normal
0.1
516
Normal
0.1
354
Normal
0.1
882
Normal
0.1
472
Normal
0.1
1031
Tumor
0.1
191
Tumor
0.1
212
Normal
0.1
696
Normal
0.1
434
Normal
0.1
642
Normal
0.1
662
Normal
0.1
618
Normal
0.0
1046
Normal
0.0
944
Normal
0.0
328
Normal
0.0
478
Normal
0.0
916
Normal
0.0
481
Tumor
0.0
427
Tumor
0.0
852
Normal
0.0
366
Normal
0.0
536
Normal
0.0
663
Tumor
0.0
383
Tumor
0.0
814
Normal
0.0
923
Tumor
0.0
924
Normal
0.0
865
Tumor
-0.1
874
Normal
-0.1
857
Tumor
-0.1
195
Tumor
-0.1
125
Tumor
-0.1
217
Tumor
-0.1
492
Normal
-0.1
413
Tumor
-0.2
327
Tumor
-0.2
953
Tumor
-0.2
873
Tumor
-0.2
627
Tumor
-0.2
141
Tumor
-0.2
461
Tumor
-0.3
813
Tumor
-0.3
431
Tumor
-0.4
365
Tumor
-0.4
755
Tumor
-0.4
423
Tumor
-0.4
1045
Tumor
-0.4
221
Tumor
-0.4
161
Tumor
-0.5
967
Tumor
-0.5
283
Tumor
-0.5
617
Tumor
-0.5
361
Tumor
-0.5
267
Tumor
-0.5
915
Tumor
-0.6
415
Tumor
-0.6
557
Tumor
-0.6
192
Normal
-0.6
563
Tumor
-0.7
285
Tumor
-0.7
127
Tumor
-0.8
465
Tumor
-0.8
713
Tumor
-0.8
641
Tumor
-0.8
297
Tumor
-0.8
823
Tumor
-0.9
515
Tumor
-0.9
343
Tumor
-0.9
447
Tumor
-1.0
883
Tumor
-1.0
112
Tumor
-1.0
185
Tumor
-1.0
135
Tumor
-1.1
975
Tumor
-1.1
527
Tumor
-1.1
463
Tumor
-1.1
393
Tumor
-1.1
867
Tumor
-1.1
147
Tumor
-1.1
777
Tumor
-1.1
443
Tumor
-1.1
213
Tumor
-1.2
647
Tumor
-1.2
615
Tumor
-1.2
445
Tumor
-1.2
513
Tumor
-1.2
491
Tumor
-1.2
477
Tumor
-1.2
957
Tumor
-1.3
331
Tumor
-1.3
917
Tumor
-1.3
1025
Tumor
-1.3
545
Tumor
-1.3
451
Tumor
-1.3
391
Tumor
-1.3
567
Tumor
-1.3
1043
Tumor
-1.3
943
Tumor
-1.3
123
Tumor
-1.3
375
Tumor
-1.3
523
Tumor
-1.3
257
Tumor
-1.3
963
Tumor
-1.3
313
Tumor
-1.4
455
Tumor
-1.4
355
Tumor
-1.4
863
Tumor
-1.4
357
Tumor
-1.4
535
Tumor
-1.4
433
Tumor
-1.4
525
Tumor
-1.4
277
Tumor
-1.4
573
Tumor
-1.4
367
Tumor
-1.5
571
Tumor
-1.5
351
Tumor
-1.5
881
Tumor
-1.5
171
Tumor
-1.5
387
Tumor
-1.5
925
Tumor
-1.5
537
Tumor
-1.5
727
Tumor
-1.5
1027
Tumor
-1.5
311
Tumor
-1.6
861
Tumor
-1.6
435
Tumor
-1.6
131
Tumor
-1.6
715
Tumor
-1.6
815
Tumor
-1.6
911
Tumor
-1.6
497
Tumor
-1.6
1015
Tumor
-1.6
473
Tumor
-1.6
983
Tumor
-1.7
737
Tumor
-1.7
1041
Tumor
-1.7
425
Tumor
-1.7
261
Tumor
-1.7
697
Tumor
-1.8
695
Tumor
-1.8
395
Tumor
-1.8
817
Tumor
-1.8
483
Tumor
-1.8
533
Tumor
-1.8
671
Tumor
-1.8
877
Tumor
-1.9
741
Tumor
-1.9
211
Tumor
-1.9
981
Tumor
-1.9
411
Tumor
-1.9
517
Tumor
-1.9
785
Tumor
-1.9
951
Tumor
-1.9
471
Tumor
-2.0
553
Tumor
-2.0
231
Tumor
-2.0
635
Tumor
-2.0
661
Tumor
-2.0
965
Tumor
-2.0
385
Tumor
-2.1
743
Tumor
-2.1
921
Tumor
-2.1
685
Tumor
-2.1
493
Tumor
-2.1
745
Tumor
-2.1
665
Tumor
-2.2
977
Tumor
-2.2
1013
Tumor
-2.2
724
Normal
-2.2
1021
Tumor
-2.3
271
Tumor
-2.5
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.