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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
VTI1A is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
2.6
Number of samples
362
Samples
Sample
Description
TPM
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
7.9
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
7.8
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
6.8
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
6.1
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
5.8
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
5.8
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
5.3
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
5.3
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
5.2
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
5.0
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
5.0
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
5.0
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
5.0
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
4.9
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
4.9
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
4.9
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
4.9
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
4.9
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
4.9
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
4.8
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
4.8
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
4.8
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
4.8
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
4.7
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
4.7
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
4.7
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
4.6
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
4.6
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
4.6
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
4.3
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
4.2
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
4.2
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
4.2
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
4.2
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
4.2
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
4.2
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
4.2
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
4.2
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
4.1
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
4.1
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
4.1
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
4.1
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
4.0
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
4.0
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
4.0
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
3.9
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
3.9
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
3.9
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
3.9
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
3.9
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
3.9
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
3.9
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
3.9
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
3.8
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
3.8
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
3.8
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
3.8
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
3.8
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
3.8
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
3.7
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
3.7
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
3.7
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
3.7
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
3.7
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
3.7
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
3.7
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
3.7
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
3.7
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
3.7
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
3.7
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
3.7
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
3.6
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
3.6
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
3.6
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
3.5
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
3.5
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
3.5
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
3.5
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
3.5
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
3.5
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
3.5
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
3.5
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
3.5
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
3.5
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
3.5
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
3.5
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
3.5
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
3.4
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
3.4
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
3.4
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
3.4
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
3.4
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
3.3
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
3.3
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
3.3
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
3.3
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
3.3
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
3.2
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
3.2
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
3.2
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
3.2
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
3.2
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
3.2
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
3.2
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
3.2
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
3.1
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
3.1
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
3.1
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
3.1
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
3.1
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
3.1
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
3.1
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
3.0
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
3.0
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
3.0
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
3.0
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
3.0
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
3.0
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
3.0
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
3.0
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
3.0
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
3.0
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
3.0
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
3.0
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
3.0
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
3.0
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
2.9
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
2.9
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
2.9
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
2.9
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
2.9
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
2.9
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
2.9
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
2.9
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
2.9
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
2.9
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
2.9
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
2.9
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
2.9
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
2.9
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
2.9
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
2.9
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
2.9
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
2.9
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
2.8
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
2.8
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
2.8
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
2.8
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
2.8
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
2.8
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
2.8
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
2.8
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
2.7
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
2.7
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
2.7
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
2.7
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
2.7
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
2.7
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
2.7
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
2.7
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
2.7
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
2.7
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
2.7
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
2.7
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
2.7
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
2.7
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
2.7
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
2.6
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
2.6
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
2.6
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
2.6
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
2.6
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
2.6
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
2.6
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
2.6
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
2.6
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
2.6
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
2.6
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
2.5
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
2.5
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
2.5
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
2.5
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
2.5
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
2.5
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
2.5
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
2.5
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
2.5
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
2.4
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
2.4
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
2.4
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
2.4
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
2.4
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
2.4
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
2.4
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
2.4
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
2.4
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
2.4
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
2.4
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
2.4
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
2.4
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
2.3
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
2.3
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
2.3
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
2.3
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
2.3
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
2.3
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
2.3
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
2.3
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
2.3
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
2.3
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
2.3
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
2.2
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
2.2
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
2.2
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
2.2
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
2.2
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
2.2
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
2.2
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
2.2
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
2.2
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
2.1
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
2.1
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
2.1
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
2.1
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
2.1
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
2.1
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
2.1
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
2.1
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
2.1
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
2.1
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
2.1
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
2.1
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
2.1
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
2.1
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
2.1
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
2.1
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
2.1
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
2.1
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
2.1
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
2.1
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
2.0
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
2.0
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
2.0
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
2.0
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
2.0
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
2.0
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
2.0
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
2.0
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
2.0
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
2.0
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
2.0
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
2.0
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
2.0
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
2.0
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
2.0
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
2.0
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
2.0
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
1.9
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
1.9
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
1.9
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
1.9
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
1.9
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
1.9
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
1.9
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
1.9
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
1.9
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
1.9
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
1.9
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
1.9
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
1.9
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
1.9
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
1.9
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
1.9
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
1.9
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
1.8
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
1.8
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
1.8
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
1.8
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
1.8
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
1.8
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
1.8
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
1.8
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
1.8
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
1.7
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
1.7
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
1.7
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
1.7
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
1.7
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
1.7
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
1.7
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
1.7
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
1.7
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
1.7
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
1.7
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
1.7
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
1.7
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
1.7
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
1.7
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
1.7
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
1.7
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
1.7
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
1.7
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
1.7
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
1.7
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
1.6
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
1.6
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
1.6
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
1.6
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
1.6
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
1.6
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
1.6
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
1.6
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
1.6
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
1.6
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
1.6
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
1.6
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
1.6
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
1.6
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
1.5
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
1.5
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
1.5
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
1.5
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
1.5
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
1.5
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
1.5
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
1.5
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
1.5
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
1.5
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
1.5
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
1.5
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
1.4
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
1.4
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
1.4
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
1.4
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
1.3
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
1.3
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
1.3
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
1.3
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
1.3
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
1.2
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
1.2
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
1.2
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
1.2
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
1.2
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
1.2
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
1.2
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
1.2
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
1.2
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
1.2
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
1.1
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
1.1
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
1.1
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
1.1
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
1.1
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
1.0
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
1.0
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
1.0
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
1.0
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
1.0
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
0.9
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
0.9
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
VTI1A is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
2.5
Number of samples
231
Samples
Sample
Description
TPM
DO45283
0 years, male, NA, stage:3, alive, 510 days
7.3
DO23547
0 years, male, NA, stage:1, alive, 1020 days
6.2
DO23523
0 years, male, NA, stage:3, alive, 1080 days
6.0
DO45287
0 years, male, NA, stage:1, alive, 390 days
5.1
DO45211
0 years, male, NA, stage:3, alive, 240 days
4.9
DO45127
0 years, male, NA, stage:3, dead, 420 days
4.7
DO23524
0 years, female, NA, stage:2, alive, 1050 days
4.7
DO45121
0 years, male, NA, stage:3, alive, 1530 days
4.6
DO45301
0 years, male, NA, stage:2, dead, 1440 days
4.4
DO50829
0 years, male, NA, stage:3, alive, 570 days
4.4
DO45171
0 years, male, NA, stage:3, alive, 600 days
4.4
DO23536
0 years, male, NA, stage:2, alive, 930 days
4.3
DO48695
0 years, male, NA, stage:2, alive, 720 days
4.2
DO45185
0 years, male, NA, stage:2, alive, 600 days
4.2
DO45245
0 years, female, NA, stage:2, dead, 240 days
4.1
DO45299
0 years, female, NA, stage:1, alive, 1440 days
4.0
DO48757
0 years, female, NA, stage:3, alive, 480 days
4.0
DO23542
0 years, male, NA, stage:3, alive, 960 days
3.9
DO45277
0 years, male, NA, stage:3, alive, 600 days
3.9
DO45219
0 years, male, NA, stage:2, alive, 1080 days
3.9
DO23514
0 years, male, NA, stage:2, alive, 1290 days
3.9
DO45307
0 years, female, NA, stage:4, dead, 240 days
3.8
DO50815
0 years, male, NA, stage:3, alive, 150 days
3.8
DO45275
0 years, male, NA, stage:3, dead, 10 days
3.7
DO45249
0 years, male, NA, stage:1, alive, 630 days
3.7
DO45259
0 years, male, NA, stage:3, alive, 330 days
3.7
DO23535
0 years, male, NA, stage:1, alive, 960 days
3.7
DO23549
0 years, male, NA, stage:3, alive, 990 days
3.7
DO48682
0 years, female, NA, stage:3, dead, 120 days
3.6
DO45209
0 years, male, NA, stage:4, alive, 1350 days
3.6
DO48720
0 years, female, NA, stage:2, alive, 570 days
3.5
DO45159
0 years, male, NA, stage:3, alive, 1470 days
3.5
DO23541
0 years, male, NA, stage:2, alive, 930 days
3.5
DO45231
0 years, male, NA, stage:2, alive, 930 days
3.5
DO45203
0 years, female, NA, stage:2, alive, 1170 days
3.5
DO45187
0 years, female, NA, stage:1, alive, 1260 days
3.5
DO45279
0 years, male, NA, stage:3, alive, 1290 days
3.4
DO45225
0 years, male, NA, stage:1, alive, 1050 days
3.4
DO48732
0 years, male, NA, stage:3, alive, 630 days
3.4
DO45239
0 years, male, NA, stage:2, alive, 870 days
3.4
DO45157
0 years, male, NA, stage:2, alive, 1980 days
3.3
DO50857
0 years, male, NA, stage:2, alive, 210 days
3.3
DO50803
0 years, female, NA, stage:1, alive, 540 days
3.3
DO45213
0 years, male, NA, stage:1, alive, 1200 days
3.2
DO45235
0 years, female, NA, stage:1, alive, 900 days
3.2
DO45117
0 years, female, NA, stage:2, dead, 1110 days
3.2
DO23528
0 years, female, NA, stage:2, alive, 1020 days
3.2
DO45163
0 years, male, NA, stage:2, alive, 960 days
3.2
DO45267
0 years, male, NA, stage:3, dead, 570 days
3.2
DO48728
0 years, female, NA, stage:2, alive, 150 days
3.2
DO23530
0 years, male, NA, stage:4, dead, 180 days
3.1
DO45197
0 years, male, NA, stage:2, alive, 1170 days
3.1
DO50855
0 years, male, NA, stage:2, alive, 570 days
3.1
DO23546
0 years, male, NA, stage:2, alive, 1050 days
3.1
DO45251
0 years, female, NA, stage:2, alive, 900 days
3.1
DO45281
0 years, male, NA, stage:4, alive, 750 days
3.1
DO50813
0 years, male, NA, stage:2, alive, 420 days
3.0
DO23508
0 years, female, NA, stage:2, alive, 390 days
3.0
DO45305
0 years, male, NA, stage:4, alive, 300 days
3.0
DO50800
0 years, male, NA, stage:2, alive, 510 days
3.0
DO48730
0 years, female, NA, stage:2, alive, 630 days
3.0
DO23513
0 years, male, NA, stage:3, alive, 1200 days
3.0
DO45177
0 years, female, NA, stage:3, alive, 1260 days
3.0
DO45303
0 years, female, NA, stage:3, alive, 990 days
3.0
DO45141
0 years, male, NA, stage:2, alive, 1320 days
2.9
DO50787
0 years, male, NA, stage:3, alive, 480 days
2.9
DO23529
0 years, male, NA, stage:4, alive, 930 days
2.9
DO48697
0 years, female, NA, stage:2, dead, 810 days
2.9
DO45139
0 years, male, NA, stage:3, alive, 1320 days
2.9
DO48721
0 years, female, NA, stage:1, alive, 900 days
2.9
DO50802
0 years, male, NA, stage:2, alive, 930 days
2.9
DO23539
0 years, male, NA, stage:1, alive, 1110 days
2.9
DO50825
0 years, male, NA, stage:2, alive, 390 days
2.9
DO45223
0 years, male, NA, stage:4, alive, 1020 days
2.8
DO45237
0 years, male, NA, stage:2, alive, 900 days
2.8
DO50789
0 years, female, NA, stage:2, alive, 570 days
2.8
DO23526
0 years, male, NA, stage:3, alive, 1050 days
2.8
DO45189
0 years, female, NA, stage:2, alive, 1200 days
2.8
DO50850
0 years, male, NA, stage:3, alive, 720 days
2.8
DO50778
0 years, male, NA, stage:4, alive, 630 days
2.8
DO45091
0 years, male, NA, stage:2, dead, 1320 days
2.7
DO45123
0 years, female, NA, stage:2, dead, 570 days
2.7
DO45273
0 years, male, NA, stage:2, alive, 480 days
2.7
DO48706
0 years, male, NA, stage:2, alive, 870 days
2.7
DO23537
0 years, male, NA, stage:2, dead, 900 days
2.7
DO50822
0 years, male, NA, stage:2, alive, 510 days
2.7
DO50820
0 years, female, NA, stage:3, alive, 510 days
2.7
DO48737
0 years, male, NA, stage:1, alive, 720 days
2.7
DO48681
0 years, male, NA, stage:2, alive, 900 days
2.6
DO45253
0 years, male, NA, stage:2, alive, 870 days
2.6
DO45257
0 years, male, NA, stage:3, alive, 810 days
2.6
DO50809
0 years, male, NA, stage:3, dead, 720 days
2.6
DO45133
0 years, male, NA, stage:3, dead, 660 days
2.6
DO48701
0 years, male, NA, stage:2, alive, 780 days
2.5
DO45135
0 years, male, NA, stage:1, alive, 1410 days
2.5
DO45161
0 years, male, NA, stage:2, dead, 540 days
2.5
DO48679
0 years, male, NA, stage:2, alive, 1200 days
2.5
DO23533
0 years, male, NA, stage:2, alive, 900 days
2.5
DO45155
0 years, male, NA, stage:2, alive, 2160 days
2.5
DO48743
0 years, female, NA, stage:2, alive, 570 days
2.5
DO48736
0 years, female, NA, stage:1, alive, 600 days
2.5
DO23525
0 years, male, NA, stage:4, alive, 1050 days
2.5
DO45165
0 years, male, NA, stage:2, alive, 690 days
2.5
DO48672
0 years, male, NA, stage:2, alive, 450 days
2.5
DO45205
0 years, female, NA, stage:2, dead, 90 days
2.5
DO50799
0 years, female, NA, stage:2, alive, 540 days
2.4
DO45243
0 years, female, NA, stage:3, alive, 930 days
2.4
DO45103
0 years, male, NA, stage:3, alive, 450 days
2.4
DO45263
0 years, male, NA, stage:3, dead, 270 days
2.4
DO45179
0 years, female, NA, stage:2, alive, 600 days
2.4
DO48712
0 years, male, NA, stage:2, alive, 810 days
2.4
DO48761
0 years, male, NA, stage:2, alive, 870 days
2.4
DO48747
0 years, male, NA, stage:3, alive, 540 days
2.4
DO45099
0 years, male, NA, stage:3, alive, 1590 days
2.4
DO50819
0 years, female, NA, stage:2, alive, 510 days
2.4
DO45129
0 years, male, NA, stage:3, alive, 1470 days
2.4
DO45255
0 years, male, NA, stage:3, alive, 720 days
2.4
DO45193
0 years, female, NA, stage:4, dead, 120 days
2.4
DO45289
0 years, female, NA, stage:3, alive, 360 days
2.4
DO48725
0 years, male, NA, stage:1, alive, 780 days
2.3
DO23552
0 years, female, NA, stage:1, alive, 810 days
2.3
DO48742
0 years, male, NA, stage:2, alive, 600 days
2.3
DO45153
0 years, female, NA, stage:2, alive, 1380 days
2.3
DO50807
0 years, male, NA, stage:1, alive, 540 days
2.3
DO45191
0 years, female, NA, stage:2, alive, 1200 days
2.3
DO45143
0 years, male, NA, stage:3, alive, 1290 days
2.3
DO45149
0 years, female, NA, stage:2, alive, 1260 days
2.3
DO48733
0 years, male, NA, stage:2, alive, 600 days
2.3
DO45227
0 years, female, NA, stage:2, alive, 1020 days
2.3
DO23527
0 years, male, NA, stage:1, alive, 1050 days
2.3
DO48751
0 years, male, NA, stage:2, dead, 480 days
2.3
DO45095
0 years, male, NA, stage:2, alive, 1620 days
2.3
DO45113
0 years, male, NA, stage:3, alive, 1560 days
2.3
DO45221
0 years, female, NA, stage:4, dead, 390 days
2.2
DO45105
0 years, male, NA, stage:1, alive, 1680 days
2.2
DO45247
0 years, female, NA, stage:2, alive, 210 days
2.2
DO48700
0 years, female, NA, stage:2, alive, 810 days
2.2
DO45217
0 years, female, NA, stage:3, dead, 270 days
2.2
DO23543
0 years, male, NA, stage:2, alive, 1020 days
2.2
DO23509
0 years, male, NA, stage:3, dead, 780 days
2.2
DO45145
0 years, male, NA, stage:3, dead, 60 days
2.2
DO45183
0 years, female, NA, stage:2, dead, 570 days
2.1
DO45097
0 years, male, NA, stage:3, alive, 1620 days
2.1
DO50859
0 years, male, NA, stage:2, alive, 180 days
2.1
DO45261
0 years, male, NA, stage:3, alive, 990 days
2.1
DO23510
0 years, female, NA, stage:2, alive, 870 days
2.1
DO50774
0 years, female, NA, stage:2, alive, 720 days
2.1
DO45265
0 years, male, NA, stage:3, alive, 1020 days
2.1
DO23512
0 years, male, NA, stage:1, alive, 1260 days
2.1
DO23548
0 years, female, NA, stage:1, alive, 840 days
2.1
DO50811
0 years, male, NA, stage:1, alive, 450 days
2.1
DO45173
0 years, male, NA, stage:3, alive, 1170 days
2.0
DO45169
0 years, male, NA, stage:3, alive, 1350 days
2.0
DO45131
0 years, male, NA, stage:4, dead, 360 days
2.0
DO50845
0 years, male, NA, stage:3, alive, 210 days
2.0
DO45092
0 years, male, NA, stage:4, dead, 1200 days
2.0
DO50818
0 years, male, NA, stage:2, alive, 510 days
2.0
DO45269
0 years, male, NA, stage:3, alive, 750 days
2.0
DO45229
0 years, male, NA, stage:1, alive, 990 days
2.0
DO48723
0 years, male, NA, stage:1, alive, 600 days
2.0
DO48693
0 years, male, NA, stage:2, alive, 900 days
2.0
DO48759
0 years, male, NA, stage:3, alive, 720 days
2.0
DO227801
0 years, female, NA, stage:1, alive, 660 days
2.0
DO50805
0 years, male, NA, stage:2, alive, 690 days
2.0
DO48677
0 years, male, NA, stage:3, alive, 1140 days
2.0
DO23538
0 years, male, NA, stage:2, alive, 450 days
2.0
DO50783
0 years, male, NA, stage:3, alive, 480 days
1.9
DO45215
0 years, male, NA, stage:2, alive, 1170 days
1.9
DO45297
0 years, female, NA, stage:4, dead, 1260 days
1.9
DO45175
0 years, male, NA, stage:2, alive, 1140 days
1.9
DO45093
0 years, male, NA, stage:2, dead, 720 days
1.9
DO23550
0 years, male, NA, stage:1, alive, 990 days
1.9
DO50840
0 years, male, NA, stage:2, alive, 330 days
1.9
DO23551
0 years, male, NA, stage:3, dead, 150 days
1.9
DO45094
0 years, male, NA, stage:3, alive, 1650 days
1.9
DO50776
0 years, male, NA, stage:1, alive, 690 days
1.9
DO45115
0 years, male, NA, stage:2, alive, 840 days
1.9
DO23545
0 years, male, NA, stage:2, dead, 570 days
1.9
DO48717
0 years, male, NA, stage:4, dead, 180 days
1.9
DO45096
0 years, male, NA, stage:2, dead, 1290 days
1.9
DO50798
0 years, male, NA, stage:3, dead, 30 days
1.9
DO23519
0 years, male, NA, stage:3, alive, 630 days
1.9
DO23515
0 years, male, NA, stage:2, alive, 1230 days
1.8
DO50844
0 years, male, NA, stage:4, alive, 300 days
1.8
DO45285
0 years, male, NA, stage:3, alive, 480 days
1.8
DO50816
0 years, male, NA, stage:2, alive, 390 days
1.8
DO50793
0 years, male, NA, stage:4, alive, 540 days
1.8
DO48704
0 years, female, NA, stage:3, alive, 750 days
1.8
DO45137
0 years, male, NA, stage:1, alive, 1320 days
1.8
DO45207
0 years, male, NA, stage:1, alive, 1050 days
1.8
DO23531
0 years, female, NA, stage:3, alive, 900 days
1.8
DO45181
0 years, female, NA, stage:2, alive, 1200 days
1.8
DO45199
0 years, female, NA, stage:2, alive, 1350 days
1.7
DO23518
0 years, male, NA, stage:2, alive, 1320 days
1.7
DO48715
0 years, female, NA, stage:2, dead, 690 days
1.7
DO50804
0 years, male, NA, stage:2, alive, 720 days
1.7
DO45101
0 years, male, NA, stage:2, alive, 1680 days
1.7
DO50808
0 years, male, NA, stage:2, alive, 570 days
1.7
DO23521
0 years, male, NA, stage:3, alive, 1110 days
1.7
DO48719
0 years, male, NA, stage:2, alive, 690 days
1.7
DO50791
0 years, female, NA, stage:1, dead, 480 days
1.7
DO23534
0 years, male, NA, stage:2, alive, 840 days
1.6
DO45107
0 years, female, NA, stage:2, alive, 1710 days
1.6
DO50839
0 years, female, NA, stage:3, alive, 330 days
1.6
DO45233
0 years, male, NA, stage:3, alive, 900 days
1.6
DO45119
0 years, male, NA, stage:3, dead, 510 days
1.6
DO45201
0 years, male, NA, stage:1, alive, 900 days
1.6
DO45111
0 years, male, NA, stage:2, alive, 1590 days
1.6
DO50817
0 years, male, NA, stage:2, alive, 390 days
1.5
DO48716
0 years, male, NA, stage:2, alive, 720 days
1.5
DO50832
0 years, male, NA, stage:3, alive, 90 days
1.5
DO45241
0 years, male, NA, stage:1, alive, 1080 days
1.5
DO227643
0 years, male, NA, stage:2, alive, 1260 days
1.4
DO50806
0 years, male, NA, stage:4, alive, 540 days
1.4
DO48760
0 years, female, NA, stage:2, alive, 690 days
1.4
DO23517
0 years, male, NA, stage:2, alive, 1200 days
1.4
DO48727
0 years, female, NA, stage:2, dead, 390 days
1.3
DO45195
0 years, male, NA, stage:1, alive, 390 days
1.2
DO23544
0 years, male, NA, stage:2, alive, 960 days
1.2
DO45167
0 years, male, NA, stage:2, dead, 1440 days
1.2
DO48746
0 years, male, NA, stage:3, alive, 570 days
1.2
DO23511
0 years, female, NA, stage:3, dead, 180 days
1.2
DO50814
0 years, male, NA, stage:3, alive, 420 days
1.1
DO45109
0 years, male, NA, stage:2, alive, 1590 days
1.1
DO23516
0 years, male, NA, stage:3, dead, 20 days
1.1
DO23540
0 years, male, NA, stage:1, alive, 750 days
1.0
DO48674
0 years, male, NA, stage:2, alive, 1260 days
1.0
DO45125
0 years, male, NA, stage:3, alive, 1680 days
0.7
DO23532
0 years, female, NA, stage:1, alive, 960 days
0.7
DO50785
0 years, male, NA, stage:4, dead, 90 days
0.6
DO48741
0 years, male, NA, stage:3, alive, 240 days
0.1
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
685
Tumor
1.4
553
Tumor
1.1
271
Tumor
1.0
1025
Tumor
0.9
231
Tumor
0.9
1041
Tumor
0.8
123
Tumor
0.8
473
Tumor
0.8
911
Tumor
0.7
967
Tumor
0.7
355
Tumor
0.7
471
Tumor
0.7
351
Tumor
0.7
965
Tumor
0.7
1027
Tumor
0.6
963
Tumor
0.6
537
Tumor
0.6
823
Tumor
0.6
451
Tumor
0.6
1021
Tumor
0.6
327
Tumor
0.6
221
Tumor
0.5
937
Tumor
0.5
921
Tumor
0.5
257
Tumor
0.5
484
Normal
0.5
267
Tumor
0.5
756
Normal
0.5
697
Tumor
0.5
567
Tumor
0.5
435
Tumor
0.5
147
Tumor
0.5
741
Tumor
0.5
1043
Tumor
0.5
431
Tumor
0.4
665
Tumor
0.4
497
Tumor
0.4
545
Tumor
0.4
953
Tumor
0.4
171
Tumor
0.4
297
Tumor
0.4
647
Tumor
0.4
487
Tumor
0.4
331
Tumor
0.4
341
Tumor
0.3
695
Tumor
0.3
187
Tumor
0.3
387
Tumor
0.3
393
Tumor
0.3
851
Tumor
0.3
786
Normal
0.3
957
Tumor
0.3
357
Tumor
0.3
223
Tumor
0.3
1031
Tumor
0.3
427
Tumor
0.3
877
Tumor
0.3
277
Tumor
0.3
477
Tumor
0.2
917
Tumor
0.2
743
Tumor
0.2
525
Tumor
0.2
124
Normal
0.2
483
Tumor
0.2
641
Tumor
0.2
415
Tumor
0.2
557
Tumor
0.2
395
Tumor
0.2
1032
Normal
0.2
493
Tumor
0.2
361
Tumor
0.2
817
Tumor
0.2
713
Tumor
0.2
523
Tumor
0.2
125
Tumor
0.2
533
Tumor
0.2
615
Tumor
0.2
524
Normal
0.2
1013
Tumor
0.2
722
Normal
0.2
536
Normal
0.2
981
Tumor
0.2
353
Tumor
0.2
191
Tumor
0.1
966
Normal
0.1
964
Normal
0.1
642
Normal
0.1
715
Tumor
0.1
127
Tumor
0.1
332
Normal
0.1
312
Normal
0.1
881
Tumor
0.1
755
Tumor
0.1
411
Tumor
0.1
278
Normal
0.1
313
Tumor
0.1
534
Normal
0.1
968
Normal
0.1
563
Tumor
0.1
923
Tumor
0.1
433
Tumor
0.1
527
Tumor
0.1
975
Tumor
0.1
721
Tumor
0.1
884
Normal
0.1
413
Tumor
0.1
465
Tumor
0.1
188
Normal
0.1
1045
Tumor
0.1
314
Normal
0.1
617
Tumor
0.1
145
Tumor
0.1
114
Normal
0.1
535
Tumor
0.1
883
Tumor
0.1
627
Tumor
0.0
571
Tumor
0.0
467
Tumor
0.0
261
Tumor
0.0
422
Normal
0.0
1044
Normal
0.0
572
Normal
0.0
636
Normal
0.0
148
Normal
0.0
311
Tumor
0.0
426
Normal
0.0
686
Normal
0.0
185
Tumor
0.0
745
Tumor
0.0
161
Tumor
0.0
554
Normal
0.0
481
Tumor
0.0
428
Normal
0.0
298
Normal
0.0
186
Normal
0.0
343
Tumor
0.0
363
Tumor
0.0
268
Normal
0.0
618
Normal
0.0
132
Normal
0.0
666
Normal
0.0
628
Normal
0.0
914
Normal
0.0
815
Tumor
0.0
162
Normal
0.0
515
Tumor
0.0
135
Tumor
0.0
924
Normal
0.0
131
Tumor
0.0
416
Normal
0.0
916
Normal
0.0
517
Tumor
0.0
436
Normal
0.0
491
Tumor
0.0
227
Tumor
0.0
915
Tumor
0.0
546
Normal
0.0
716
Normal
0.0
112
Tumor
0.0
913
Tumor
0.0
724
Normal
0.0
468
Normal
0.0
738
Normal
0.0
635
Tumor
0.0
396
Normal
0.0
443
Tumor
0.0
172
Normal
0.0
498
Normal
0.0
365
Tumor
0.0
328
Normal
0.0
742
Normal
0.0
714
Normal
-0.1
385
Tumor
-0.1
421
Tumor
-0.1
528
Normal
-0.1
462
Normal
-0.1
954
Normal
-0.1
285
Tumor
-0.1
516
Normal
-0.1
513
Tumor
-0.1
362
Normal
-0.1
414
Normal
-0.1
958
Normal
-0.1
222
Normal
-0.1
126
Normal
-0.1
356
Normal
-0.1
136
Normal
-0.1
526
Normal
-0.1
218
Normal
-0.1
488
Normal
-0.1
392
Normal
-0.1
698
Normal
-0.1
858
Normal
-0.1
455
Tumor
-0.1
1026
Normal
-0.1
664
Normal
-0.1
558
Normal
-0.1
213
Tumor
-0.1
284
Normal
-0.1
113
Tumor
-0.1
432
Normal
-0.1
366
Normal
-0.1
922
Normal
-0.1
977
Tumor
-0.1
262
Normal
-0.1
982
Normal
-0.1
1016
Normal
-0.1
696
Normal
-0.1
663
Tumor
-0.1
452
Normal
-0.1
448
Normal
-0.1
538
Normal
-0.1
926
Normal
-0.1
138
Normal
-0.1
217
Tumor
-0.1
912
Normal
-0.1
616
Normal
-0.1
111
Normal
-0.1
518
Normal
-0.1
461
Tumor
-0.1
494
Normal
-0.1
951
Tumor
-0.1
424
Normal
-0.1
352
Normal
-0.1
472
Normal
-0.1
878
Normal
-0.1
214
Normal
-0.1
478
Normal
-0.1
474
Normal
-0.1
662
Normal
-0.1
976
Normal
-0.1
383
Tumor
-0.2
952
Normal
-0.2
272
Normal
-0.2
434
Normal
-0.2
386
Normal
-0.2
388
Normal
-0.2
1046
Normal
-0.2
1028
Normal
-0.2
956
Normal
-0.2
955
Tumor
-0.2
918
Normal
-0.2
514
Normal
-0.2
446
Normal
-0.2
1022
Normal
-0.2
863
Tumor
-0.2
852
Normal
-0.2
142
Normal
-0.2
364
Normal
-0.2
744
Normal
-0.2
816
Normal
-0.2
368
Normal
-0.2
376
Normal
-0.2
824
Normal
-0.2
1042
Normal
-0.2
375
Tumor
-0.2
564
Normal
-0.2
925
Tumor
-0.2
978
Normal
-0.2
258
Normal
-0.2
944
Normal
-0.2
573
Tumor
-0.2
861
Tumor
-0.2
661
Tumor
-0.2
228
Normal
-0.2
141
Tumor
-0.2
818
Normal
-0.2
354
Normal
-0.2
938
Normal
-0.2
857
Tumor
-0.2
482
Normal
-0.2
394
Normal
-0.2
344
Normal
-0.2
423
Tumor
-0.2
128
Normal
-0.2
464
Normal
-0.2
882
Normal
-0.2
984
Normal
-0.2
342
Normal
-0.2
447
Tumor
-0.2
492
Normal
-0.2
196
Normal
-0.2
358
Normal
-0.2
727
Tumor
-0.2
466
Normal
-0.3
444
Normal
-0.3
874
Normal
-0.3
671
Tumor
-0.3
384
Normal
-0.3
195
Tumor
-0.3
232
Normal
-0.3
862
Normal
-0.3
672
Normal
-0.3
412
Normal
-0.3
866
Normal
-0.3
648
Normal
-0.3
367
Tumor
-0.3
1014
Normal
-0.3
777
Tumor
-0.3
737
Tumor
-0.4
445
Tumor
-0.4
723
Tumor
-0.4
192
Normal
-0.4
224
Normal
-0.4
391
Tumor
-0.4
211
Tumor
-0.4
425
Tumor
-0.4
813
Tumor
-0.4
146
Normal
-0.4
785
Tumor
-0.4
728
Normal
-0.4
456
Normal
-0.4
568
Normal
-0.4
574
Normal
-0.4
1015
Tumor
-0.5
873
Tumor
-0.5
864
Normal
-0.5
778
Normal
-0.5
137
Tumor
-0.5
868
Normal
-0.5
286
Normal
-0.5
463
Tumor
-0.5
983
Tumor
-0.5
867
Tumor
-0.6
746
Normal
-0.6
943
Tumor
-0.6
814
Normal
-0.7
212
Normal
-0.7
865
Tumor
-0.8
283
Tumor
-0.8
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
