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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
VPS26B is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
16.0
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
42.6
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
42.1
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
41.0
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
38.3
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
36.2
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
33.2
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
32.6
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
32.6
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
32.5
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
31.5
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
31.5
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
30.7
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
30.5
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
29.9
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
29.8
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
29.1
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
28.0
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
27.8
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
27.7
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
27.5
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
27.4
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
27.4
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
26.9
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
26.7
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
26.6
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
26.0
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
25.9
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
25.9
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
25.7
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
25.5
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
25.3
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
25.2
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
25.0
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
24.8
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
24.4
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
24.4
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
24.4
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
24.3
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
24.3
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
24.2
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
24.1
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
24.1
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
24.1
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
24.0
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
24.0
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
23.9
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
23.6
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
23.5
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
23.5
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
23.5
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
23.5
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
23.5
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
23.3
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
23.0
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
22.9
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
22.4
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
22.3
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
22.2
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
22.2
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
22.2
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
22.2
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
22.2
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
21.9
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
21.9
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
21.7
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
21.7
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
21.6
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
21.5
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
21.4
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
21.3
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
21.3
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
21.3
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
21.3
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
21.3
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
21.2
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
21.2
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
21.1
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
21.0
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
21.0
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
20.9
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
20.7
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
20.6
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
20.6
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
20.6
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
20.5
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
20.4
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
20.4
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
20.3
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
20.3
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
20.3
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
20.1
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
20.1
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
20.0
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
20.0
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
19.9
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
19.9
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
19.8
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
19.8
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
19.8
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
19.6
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
19.5
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
19.5
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
19.2
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
19.2
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
19.1
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
19.1
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
19.1
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
19.0
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
19.0
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
18.9
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
18.8
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
18.8
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
18.8
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
18.7
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
18.6
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
18.6
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
18.6
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
18.6
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
18.5
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
18.5
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
18.5
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
18.5
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
18.4
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
18.2
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
18.2
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
18.2
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
18.1
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
18.0
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
18.0
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
18.0
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
18.0
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
17.9
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
17.9
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
17.9
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
17.8
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
17.8
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
17.8
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
17.7
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
17.7
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
17.7
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
17.6
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
17.5
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
17.5
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
17.4
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
17.4
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
17.3
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
17.3
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
17.2
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
17.2
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
17.2
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
17.2
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
17.1
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
17.1
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
17.1
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
16.9
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
16.8
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
16.7
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
16.6
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
16.6
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
16.5
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
16.4
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
16.4
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
16.3
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
16.3
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
16.2
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
16.1
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
16.1
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
16.0
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
16.0
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
16.0
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
16.0
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
15.9
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
15.9
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
15.9
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
15.8
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
15.8
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
15.7
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
15.7
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
15.6
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
15.6
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
15.6
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
15.6
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
15.5
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
15.4
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
15.4
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
15.4
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
15.4
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
15.3
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
15.3
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
15.3
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
15.3
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
15.2
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
15.2
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
15.1
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
15.1
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
15.0
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
15.0
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
14.9
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
14.9
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
14.6
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
14.6
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
14.5
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
14.5
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
14.5
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
14.5
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
14.5
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
14.3
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
14.3
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
14.2
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
14.1
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
14.0
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
14.0
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
13.9
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
13.6
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
13.6
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
13.6
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
13.5
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
13.5
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
13.5
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
13.4
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
13.4
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
13.4
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
13.4
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
13.4
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
13.2
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
13.2
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
13.2
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
13.2
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
13.1
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
13.0
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
13.0
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
12.9
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
12.8
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
12.7
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
12.7
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
12.6
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
12.5
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
12.5
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
12.4
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
12.4
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
12.4
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
12.3
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
12.3
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
12.1
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
12.0
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
12.0
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
12.0
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
12.0
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
11.9
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
11.9
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
11.9
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
11.8
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
11.7
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
11.7
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
11.7
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
11.6
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
11.5
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
11.5
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
11.4
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
11.4
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
11.4
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
11.4
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
11.3
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
11.3
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
11.2
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
11.2
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
11.1
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
11.1
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
11.1
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
11.1
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
11.0
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
11.0
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
11.0
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
10.9
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
10.8
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
10.8
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
10.8
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
10.7
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
10.6
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
10.6
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
10.5
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
10.5
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
10.4
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
10.4
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
10.3
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
10.3
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
10.3
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
10.2
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
10.2
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
10.1
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
10.1
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
10.0
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
9.9
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
9.9
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
9.9
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
9.9
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
9.9
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
9.8
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
9.5
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
9.5
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
9.4
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
9.4
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
9.3
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
9.3
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
9.1
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
9.1
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
9.0
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
9.0
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
8.9
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
8.8
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
8.8
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
8.8
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
8.8
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
8.7
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
8.6
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
8.5
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
8.3
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
8.3
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
8.2
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
8.1
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
8.1
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
8.0
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
7.9
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
7.9
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
7.8
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
7.7
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
7.7
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
7.7
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
7.6
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
7.5
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
7.4
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
7.3
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
7.1
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
7.1
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
7.1
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
7.0
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
7.0
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
6.7
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
6.7
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
6.7
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
6.5
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
6.4
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
6.4
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
6.4
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
6.3
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
6.2
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
6.1
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
6.0
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
5.6
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
5.6
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
5.6
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
5.5
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
5.5
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
5.4
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
5.4
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
5.1
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
5.1
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
4.9
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
4.6
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
4.3
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
3.9
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
VPS26B is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
15.6
Number of samples
231
Samples
Sample
Description
TPM
DO23513
0 years, male, NA, stage:3, alive, 1200 days
51.6
DO50793
0 years, male, NA, stage:4, alive, 540 days
30.2
DO23515
0 years, male, NA, stage:2, alive, 1230 days
28.7
DO45205
0 years, female, NA, stage:2, dead, 90 days
27.3
DO45209
0 years, male, NA, stage:4, alive, 1350 days
27.1
DO50820
0 years, female, NA, stage:3, alive, 510 days
26.3
DO48751
0 years, male, NA, stage:2, dead, 480 days
25.5
DO45299
0 years, female, NA, stage:1, alive, 1440 days
25.5
DO45219
0 years, male, NA, stage:2, alive, 1080 days
24.8
DO23532
0 years, female, NA, stage:1, alive, 960 days
24.5
DO48717
0 years, male, NA, stage:4, dead, 180 days
24.3
DO48701
0 years, male, NA, stage:2, alive, 780 days
24.3
DO48733
0 years, male, NA, stage:2, alive, 600 days
24.2
DO50783
0 years, male, NA, stage:3, alive, 480 days
23.8
DO45091
0 years, male, NA, stage:2, dead, 1320 days
23.6
DO48757
0 years, female, NA, stage:3, alive, 480 days
23.2
DO45119
0 years, male, NA, stage:3, dead, 510 days
23.1
DO45189
0 years, female, NA, stage:2, alive, 1200 days
23.0
DO50855
0 years, male, NA, stage:2, alive, 570 days
22.4
DO45183
0 years, female, NA, stage:2, dead, 570 days
22.4
DO50816
0 years, male, NA, stage:2, alive, 390 days
22.4
DO45303
0 years, female, NA, stage:3, alive, 990 days
22.2
DO23537
0 years, male, NA, stage:2, dead, 900 days
22.1
DO50802
0 years, male, NA, stage:2, alive, 930 days
22.1
DO48727
0 years, female, NA, stage:2, dead, 390 days
22.1
DO45227
0 years, female, NA, stage:2, alive, 1020 days
21.5
DO45171
0 years, male, NA, stage:3, alive, 600 days
21.5
DO45159
0 years, male, NA, stage:3, alive, 1470 days
21.4
DO45243
0 years, female, NA, stage:3, alive, 930 days
21.1
DO50839
0 years, female, NA, stage:3, alive, 330 days
20.9
DO23540
0 years, male, NA, stage:1, alive, 750 days
20.7
DO45149
0 years, female, NA, stage:2, alive, 1260 days
20.6
DO45307
0 years, female, NA, stage:4, dead, 240 days
20.6
DO48715
0 years, female, NA, stage:2, dead, 690 days
20.5
DO45179
0 years, female, NA, stage:2, alive, 600 days
20.5
DO50817
0 years, male, NA, stage:2, alive, 390 days
20.5
DO45229
0 years, male, NA, stage:1, alive, 990 days
20.4
DO50789
0 years, female, NA, stage:2, alive, 570 days
20.4
DO23536
0 years, male, NA, stage:2, alive, 930 days
20.3
DO23534
0 years, male, NA, stage:2, alive, 840 days
20.2
DO48677
0 years, male, NA, stage:3, alive, 1140 days
20.1
DO48746
0 years, male, NA, stage:3, alive, 570 days
20.0
DO48695
0 years, male, NA, stage:2, alive, 720 days
19.9
DO45137
0 years, male, NA, stage:1, alive, 1320 days
19.9
DO45249
0 years, male, NA, stage:1, alive, 630 days
19.9
DO45125
0 years, male, NA, stage:3, alive, 1680 days
19.8
DO45217
0 years, female, NA, stage:3, dead, 270 days
19.8
DO45133
0 years, male, NA, stage:3, dead, 660 days
19.8
DO23535
0 years, male, NA, stage:1, alive, 960 days
19.8
DO23529
0 years, male, NA, stage:4, alive, 930 days
19.8
DO23526
0 years, male, NA, stage:3, alive, 1050 days
19.8
DO48736
0 years, female, NA, stage:1, alive, 600 days
19.7
DO45287
0 years, male, NA, stage:1, alive, 390 days
19.6
DO45155
0 years, male, NA, stage:2, alive, 2160 days
19.5
DO45213
0 years, male, NA, stage:1, alive, 1200 days
19.5
DO45305
0 years, male, NA, stage:4, alive, 300 days
19.5
DO23552
0 years, female, NA, stage:1, alive, 810 days
19.4
DO48719
0 years, male, NA, stage:2, alive, 690 days
19.4
DO23528
0 years, female, NA, stage:2, alive, 1020 days
19.4
DO50799
0 years, female, NA, stage:2, alive, 540 days
19.0
DO45265
0 years, male, NA, stage:3, alive, 1020 days
18.9
DO45187
0 years, female, NA, stage:1, alive, 1260 days
18.9
DO50806
0 years, male, NA, stage:4, alive, 540 days
18.8
DO45257
0 years, male, NA, stage:3, alive, 810 days
18.6
DO45203
0 years, female, NA, stage:2, alive, 1170 days
18.6
DO45121
0 years, male, NA, stage:3, alive, 1530 days
18.5
DO45173
0 years, male, NA, stage:3, alive, 1170 days
18.5
DO50845
0 years, male, NA, stage:3, alive, 210 days
18.4
DO50791
0 years, female, NA, stage:1, dead, 480 days
18.4
DO45107
0 years, female, NA, stage:2, alive, 1710 days
18.2
DO45277
0 years, male, NA, stage:3, alive, 600 days
18.1
DO50804
0 years, male, NA, stage:2, alive, 720 days
18.1
DO45105
0 years, male, NA, stage:1, alive, 1680 days
18.0
DO23510
0 years, female, NA, stage:2, alive, 870 days
17.9
DO45275
0 years, male, NA, stage:3, dead, 10 days
17.9
DO45273
0 years, male, NA, stage:2, alive, 480 days
17.9
DO45207
0 years, male, NA, stage:1, alive, 1050 days
17.9
DO45153
0 years, female, NA, stage:2, alive, 1380 days
17.8
DO23547
0 years, male, NA, stage:1, alive, 1020 days
17.8
DO45177
0 years, female, NA, stage:3, alive, 1260 days
17.7
DO45161
0 years, male, NA, stage:2, dead, 540 days
17.7
DO45097
0 years, male, NA, stage:3, alive, 1620 days
17.5
DO45301
0 years, male, NA, stage:2, dead, 1440 days
17.5
DO45095
0 years, male, NA, stage:2, alive, 1620 days
17.4
DO50825
0 years, male, NA, stage:2, alive, 390 days
17.4
DO45092
0 years, male, NA, stage:4, dead, 1200 days
17.4
DO23543
0 years, male, NA, stage:2, alive, 1020 days
17.3
DO45283
0 years, male, NA, stage:3, alive, 510 days
17.3
DO23548
0 years, female, NA, stage:1, alive, 840 days
17.1
DO45221
0 years, female, NA, stage:4, dead, 390 days
17.0
DO45201
0 years, male, NA, stage:1, alive, 900 days
16.9
DO23508
0 years, female, NA, stage:2, alive, 390 days
16.8
DO45113
0 years, male, NA, stage:3, alive, 1560 days
16.7
DO45267
0 years, male, NA, stage:3, dead, 570 days
16.7
DO50822
0 years, male, NA, stage:2, alive, 510 days
16.7
DO45235
0 years, female, NA, stage:1, alive, 900 days
16.6
DO45099
0 years, male, NA, stage:3, alive, 1590 days
16.6
DO48700
0 years, female, NA, stage:2, alive, 810 days
16.4
DO45103
0 years, male, NA, stage:3, alive, 450 days
16.1
DO48716
0 years, male, NA, stage:2, alive, 720 days
16.1
DO50832
0 years, male, NA, stage:3, alive, 90 days
16.0
DO48706
0 years, male, NA, stage:2, alive, 870 days
16.0
DO50859
0 years, male, NA, stage:2, alive, 180 days
15.9
DO23527
0 years, male, NA, stage:1, alive, 1050 days
15.8
DO45241
0 years, male, NA, stage:1, alive, 1080 days
15.8
DO23542
0 years, male, NA, stage:3, alive, 960 days
15.7
DO45131
0 years, male, NA, stage:4, dead, 360 days
15.7
DO23533
0 years, male, NA, stage:2, alive, 900 days
15.6
DO23524
0 years, female, NA, stage:2, alive, 1050 days
15.5
DO45223
0 years, male, NA, stage:4, alive, 1020 days
15.5
DO45185
0 years, male, NA, stage:2, alive, 600 days
15.4
DO48730
0 years, female, NA, stage:2, alive, 630 days
15.4
DO50776
0 years, male, NA, stage:1, alive, 690 days
15.4
DO50800
0 years, male, NA, stage:2, alive, 510 days
15.2
DO45259
0 years, male, NA, stage:3, alive, 330 days
15.2
DO50809
0 years, male, NA, stage:3, dead, 720 days
15.1
DO23539
0 years, male, NA, stage:1, alive, 1110 days
15.1
DO45245
0 years, female, NA, stage:2, dead, 240 days
15.0
DO48725
0 years, male, NA, stage:1, alive, 780 days
14.9
DO50811
0 years, male, NA, stage:1, alive, 450 days
14.8
DO45117
0 years, female, NA, stage:2, dead, 1110 days
14.7
DO48672
0 years, male, NA, stage:2, alive, 450 days
14.7
DO50850
0 years, male, NA, stage:3, alive, 720 days
14.7
DO50829
0 years, male, NA, stage:3, alive, 570 days
14.5
DO48720
0 years, female, NA, stage:2, alive, 570 days
14.5
DO45135
0 years, male, NA, stage:1, alive, 1410 days
14.4
DO45096
0 years, male, NA, stage:2, dead, 1290 days
14.4
DO45129
0 years, male, NA, stage:3, alive, 1470 days
14.4
DO23541
0 years, male, NA, stage:2, alive, 930 days
14.3
DO50818
0 years, male, NA, stage:2, alive, 510 days
14.2
DO50787
0 years, male, NA, stage:3, alive, 480 days
13.9
DO45094
0 years, male, NA, stage:3, alive, 1650 days
13.9
DO45281
0 years, male, NA, stage:4, alive, 750 days
13.8
DO48760
0 years, female, NA, stage:2, alive, 690 days
13.8
DO48704
0 years, female, NA, stage:3, alive, 750 days
13.5
DO45215
0 years, male, NA, stage:2, alive, 1170 days
13.5
DO45253
0 years, male, NA, stage:2, alive, 870 days
13.3
DO45163
0 years, male, NA, stage:2, alive, 960 days
13.3
DO45141
0 years, male, NA, stage:2, alive, 1320 days
13.2
DO48712
0 years, male, NA, stage:2, alive, 810 days
13.2
DO23538
0 years, male, NA, stage:2, alive, 450 days
13.1
DO45127
0 years, male, NA, stage:3, dead, 420 days
13.1
DO45145
0 years, male, NA, stage:3, dead, 60 days
13.1
DO23549
0 years, male, NA, stage:3, alive, 990 days
13.1
DO45211
0 years, male, NA, stage:3, alive, 240 days
13.1
DO45123
0 years, female, NA, stage:2, dead, 570 days
13.0
DO45251
0 years, female, NA, stage:2, alive, 900 days
13.0
DO23523
0 years, male, NA, stage:3, alive, 1080 days
12.9
DO45109
0 years, male, NA, stage:2, alive, 1590 days
12.9
DO23518
0 years, male, NA, stage:2, alive, 1320 days
12.9
DO48747
0 years, male, NA, stage:3, alive, 540 days
12.8
DO45247
0 years, female, NA, stage:2, alive, 210 days
12.8
DO45255
0 years, male, NA, stage:3, alive, 720 days
12.8
DO50778
0 years, male, NA, stage:4, alive, 630 days
12.5
DO45269
0 years, male, NA, stage:3, alive, 750 days
12.5
DO45165
0 years, male, NA, stage:2, alive, 690 days
12.5
DO23514
0 years, male, NA, stage:2, alive, 1290 days
12.4
DO45181
0 years, female, NA, stage:2, alive, 1200 days
12.4
DO48728
0 years, female, NA, stage:2, alive, 150 days
12.4
DO45169
0 years, male, NA, stage:3, alive, 1350 days
12.2
DO45279
0 years, male, NA, stage:3, alive, 1290 days
12.2
DO45233
0 years, male, NA, stage:3, alive, 900 days
12.1
DO45139
0 years, male, NA, stage:3, alive, 1320 days
12.1
DO23516
0 years, male, NA, stage:3, dead, 20 days
12.0
DO50813
0 years, male, NA, stage:2, alive, 420 days
11.8
DO23519
0 years, male, NA, stage:3, alive, 630 days
11.8
DO50798
0 years, male, NA, stage:3, dead, 30 days
11.8
DO50857
0 years, male, NA, stage:2, alive, 210 days
11.7
DO45199
0 years, female, NA, stage:2, alive, 1350 days
11.7
DO23512
0 years, male, NA, stage:1, alive, 1260 days
11.7
DO23545
0 years, male, NA, stage:2, dead, 570 days
11.6
DO48723
0 years, male, NA, stage:1, alive, 600 days
11.6
DO45101
0 years, male, NA, stage:2, alive, 1680 days
11.6
DO50774
0 years, female, NA, stage:2, alive, 720 days
11.5
DO48697
0 years, female, NA, stage:2, dead, 810 days
11.4
DO45115
0 years, male, NA, stage:2, alive, 840 days
11.4
DO50814
0 years, male, NA, stage:3, alive, 420 days
11.4
DO50815
0 years, male, NA, stage:3, alive, 150 days
11.3
DO23550
0 years, male, NA, stage:1, alive, 990 days
11.3
DO23546
0 years, male, NA, stage:2, alive, 1050 days
11.3
DO48743
0 years, female, NA, stage:2, alive, 570 days
11.3
DO48742
0 years, male, NA, stage:2, alive, 600 days
11.3
DO50844
0 years, male, NA, stage:4, alive, 300 days
11.3
DO50785
0 years, male, NA, stage:4, dead, 90 days
11.2
DO48737
0 years, male, NA, stage:1, alive, 720 days
11.1
DO45143
0 years, male, NA, stage:3, alive, 1290 days
11.1
DO48674
0 years, male, NA, stage:2, alive, 1260 days
11.1
DO50807
0 years, male, NA, stage:1, alive, 540 days
11.0
DO45175
0 years, male, NA, stage:2, alive, 1140 days
11.0
DO45297
0 years, female, NA, stage:4, dead, 1260 days
10.9
DO45289
0 years, female, NA, stage:3, alive, 360 days
10.8
DO45225
0 years, male, NA, stage:1, alive, 1050 days
10.8
DO48732
0 years, male, NA, stage:3, alive, 630 days
10.7
DO48682
0 years, female, NA, stage:3, dead, 120 days
10.7
DO48679
0 years, male, NA, stage:2, alive, 1200 days
10.7
DO45285
0 years, male, NA, stage:3, alive, 480 days
10.6
DO23530
0 years, male, NA, stage:4, dead, 180 days
10.6
DO50819
0 years, female, NA, stage:2, alive, 510 days
10.4
DO23521
0 years, male, NA, stage:3, alive, 1110 days
10.4
DO48741
0 years, male, NA, stage:3, alive, 240 days
10.3
DO45093
0 years, male, NA, stage:2, dead, 720 days
10.3
DO48721
0 years, female, NA, stage:1, alive, 900 days
10.2
DO48759
0 years, male, NA, stage:3, alive, 720 days
10.2
DO23511
0 years, female, NA, stage:3, dead, 180 days
10.2
DO50808
0 years, male, NA, stage:2, alive, 570 days
10.0
DO45157
0 years, male, NA, stage:2, alive, 1980 days
10.0
DO50805
0 years, male, NA, stage:2, alive, 690 days
9.9
DO45239
0 years, male, NA, stage:2, alive, 870 days
9.8
DO50840
0 years, male, NA, stage:2, alive, 330 days
9.7
DO45231
0 years, male, NA, stage:2, alive, 930 days
9.5
DO23525
0 years, male, NA, stage:4, alive, 1050 days
9.2
DO45191
0 years, female, NA, stage:2, alive, 1200 days
9.2
DO227801
0 years, female, NA, stage:1, alive, 660 days
9.1
DO45193
0 years, female, NA, stage:4, dead, 120 days
8.8
DO50803
0 years, female, NA, stage:1, alive, 540 days
8.8
DO48761
0 years, male, NA, stage:2, alive, 870 days
8.7
DO48681
0 years, male, NA, stage:2, alive, 900 days
8.6
DO23544
0 years, male, NA, stage:2, alive, 960 days
8.4
DO45111
0 years, male, NA, stage:2, alive, 1590 days
8.2
DO23517
0 years, male, NA, stage:2, alive, 1200 days
8.0
DO23551
0 years, male, NA, stage:3, dead, 150 days
7.9
DO23531
0 years, female, NA, stage:3, alive, 900 days
7.8
DO45197
0 years, male, NA, stage:2, alive, 1170 days
7.7
DO45263
0 years, male, NA, stage:3, dead, 270 days
7.7
DO227643
0 years, male, NA, stage:2, alive, 1260 days
7.5
DO48693
0 years, male, NA, stage:2, alive, 900 days
7.4
DO45167
0 years, male, NA, stage:2, dead, 1440 days
7.2
DO45237
0 years, male, NA, stage:2, alive, 900 days
7.1
DO23509
0 years, male, NA, stage:3, dead, 780 days
6.6
DO45195
0 years, male, NA, stage:1, alive, 390 days
6.2
DO45261
0 years, male, NA, stage:3, alive, 990 days
6.1
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
863
Tumor
1.3
481
Tumor
0.8
741
Tumor
0.8
415
Tumor
0.7
513
Tumor
0.6
473
Tumor
0.6
728
Normal
0.6
865
Tumor
0.5
737
Tumor
0.5
738
Normal
0.5
1031
Tumor
0.5
746
Normal
0.5
147
Tumor
0.5
723
Tumor
0.5
617
Tumor
0.5
616
Normal
0.5
713
Tumor
0.4
1014
Normal
0.4
958
Normal
0.4
131
Tumor
0.4
1027
Tumor
0.4
471
Tumor
0.4
721
Tumor
0.4
742
Normal
0.4
528
Normal
0.4
911
Tumor
0.4
533
Tumor
0.4
944
Normal
0.4
534
Normal
0.4
714
Normal
0.4
912
Normal
0.4
478
Normal
0.4
918
Normal
0.4
327
Tumor
0.4
756
Normal
0.4
514
Normal
0.4
964
Normal
0.4
952
Normal
0.4
938
Normal
0.4
554
Normal
0.4
494
Normal
0.4
778
Normal
0.4
484
Normal
0.4
921
Tumor
0.4
862
Normal
0.4
1022
Normal
0.4
864
Normal
0.4
968
Normal
0.4
984
Normal
0.3
1032
Normal
0.3
816
Normal
0.3
113
Tumor
0.3
824
Normal
0.3
482
Normal
0.3
364
Normal
0.3
1046
Normal
0.3
132
Normal
0.3
518
Normal
0.3
558
Normal
0.3
922
Normal
0.3
926
Normal
0.3
924
Normal
0.3
648
Normal
0.3
128
Normal
0.3
1021
Tumor
0.3
483
Tumor
0.3
955
Tumor
0.3
696
Normal
0.3
412
Normal
0.3
866
Normal
0.3
956
Normal
0.3
517
Tumor
0.3
943
Tumor
0.3
628
Normal
0.3
925
Tumor
0.3
786
Normal
0.3
1045
Tumor
0.3
111
Normal
0.3
978
Normal
0.3
954
Normal
0.3
572
Normal
0.3
664
Normal
0.3
686
Normal
0.3
553
Tumor
0.3
868
Normal
0.3
1026
Normal
0.3
516
Normal
0.3
356
Normal
0.3
328
Normal
0.3
745
Tumor
0.3
1044
Normal
0.3
636
Normal
0.3
136
Normal
0.3
472
Normal
0.3
426
Normal
0.3
698
Normal
0.3
716
Normal
0.3
114
Normal
0.3
1042
Normal
0.3
212
Normal
0.3
456
Normal
0.3
286
Normal
0.3
546
Normal
0.3
416
Normal
0.3
817
Tumor
0.2
278
Normal
0.2
913
Tumor
0.2
568
Normal
0.2
818
Normal
0.2
474
Normal
0.2
394
Normal
0.2
432
Normal
0.2
524
Normal
0.2
564
Normal
0.2
448
Normal
0.2
852
Normal
0.2
488
Normal
0.2
977
Tumor
0.2
858
Normal
0.2
641
Tumor
0.2
515
Tumor
0.2
526
Normal
0.2
228
Normal
0.2
916
Normal
0.2
314
Normal
0.2
915
Tumor
0.2
462
Normal
0.2
162
Normal
0.2
563
Tumor
0.2
884
Normal
0.2
618
Normal
0.2
715
Tumor
0.2
298
Normal
0.2
368
Normal
0.2
446
Normal
0.2
396
Normal
0.2
224
Normal
0.2
536
Normal
0.2
966
Normal
0.2
431
Tumor
0.2
127
Tumor
0.2
976
Normal
0.2
421
Tumor
0.2
982
Normal
0.2
436
Normal
0.2
172
Normal
0.2
284
Normal
0.2
424
Normal
0.2
882
Normal
0.2
126
Normal
0.2
258
Normal
0.2
666
Normal
0.2
867
Tumor
0.2
815
Tumor
0.2
917
Tumor
0.2
1041
Tumor
0.2
358
Normal
0.2
137
Tumor
0.2
186
Normal
0.2
642
Normal
0.2
271
Tumor
0.2
362
Normal
0.2
428
Normal
0.2
464
Normal
0.2
1028
Normal
0.2
148
Normal
0.2
443
Tumor
0.2
662
Normal
0.2
312
Normal
0.2
138
Normal
0.2
1016
Normal
0.2
191
Tumor
0.2
232
Normal
0.2
435
Tumor
0.2
697
Tumor
0.2
1043
Tumor
0.2
981
Tumor
0.2
523
Tumor
0.2
196
Normal
0.2
332
Normal
0.2
466
Normal
0.1
635
Tumor
0.1
878
Normal
0.1
142
Normal
0.1
487
Tumor
0.1
125
Tumor
0.1
492
Normal
0.1
386
Normal
0.1
1025
Tumor
0.1
388
Normal
0.1
414
Normal
0.1
861
Tumor
0.1
722
Normal
0.1
218
Normal
0.1
272
Normal
0.1
451
Tumor
0.1
963
Tumor
0.1
214
Normal
0.1
352
Normal
0.1
823
Tumor
0.1
124
Normal
0.1
445
Tumor
0.1
268
Normal
0.1
376
Normal
0.1
363
Tumor
0.1
874
Normal
0.1
344
Normal
0.1
285
Tumor
0.1
777
Tumor
0.1
392
Normal
0.1
975
Tumor
0.1
914
Normal
0.1
755
Tumor
0.1
525
Tumor
0.1
463
Tumor
0.1
468
Normal
0.1
422
Normal
0.1
538
Normal
0.1
498
Normal
0.1
461
Tumor
0.0
188
Normal
0.0
452
Normal
0.0
135
Tumor
0.0
923
Tumor
0.0
354
Normal
0.0
744
Normal
0.0
627
Tumor
0.0
455
Tumor
0.0
574
Normal
0.0
881
Tumor
0.0
647
Tumor
0.0
493
Tumor
0.0
672
Normal
0.0
227
Tumor
0.0
222
Normal
0.0
366
Normal
0.0
277
Tumor
0.0
262
Normal
0.0
425
Tumor
0.0
221
Tumor
0.0
146
Normal
0.0
444
Normal
0.0
434
Normal
0.0
361
Tumor
0.0
391
Tumor
0.0
187
Tumor
0.0
342
Normal
0.0
785
Tumor
0.0
365
Tumor
0.0
387
Tumor
0.0
353
Tumor
0.0
393
Tumor
0.0
384
Normal
0.0
192
Normal
0.0
557
Tumor
-0.1
145
Tumor
-0.1
217
Tumor
-0.1
257
Tumor
-0.1
213
Tumor
-0.1
951
Tumor
-0.1
427
Tumor
-0.1
465
Tumor
-0.1
661
Tumor
-0.1
185
Tumor
-0.1
671
Tumor
-0.1
311
Tumor
-0.1
355
Tumor
-0.1
813
Tumor
-0.1
527
Tumor
-0.1
663
Tumor
-0.1
537
Tumor
-0.1
957
Tumor
-0.1
665
Tumor
-0.1
161
Tumor
-0.1
433
Tumor
-0.1
383
Tumor
-0.1
195
Tumor
-0.1
395
Tumor
-0.2
851
Tumor
-0.2
297
Tumor
-0.2
1015
Tumor
-0.2
211
Tumor
-0.2
491
Tumor
-0.2
967
Tumor
-0.2
313
Tumor
-0.2
261
Tumor
-0.2
467
Tumor
-0.2
343
Tumor
-0.2
413
Tumor
-0.2
857
Tumor
-0.2
283
Tumor
-0.2
1013
Tumor
-0.2
877
Tumor
-0.2
141
Tumor
-0.2
477
Tumor
-0.3
357
Tumor
-0.3
447
Tumor
-0.3
571
Tumor
-0.3
695
Tumor
-0.3
724
Normal
-0.3
375
Tumor
-0.3
573
Tumor
-0.3
937
Tumor
-0.3
331
Tumor
-0.3
814
Normal
-0.3
727
Tumor
-0.3
123
Tumor
-0.3
367
Tumor
-0.3
873
Tumor
-0.4
953
Tumor
-0.4
112
Tumor
-0.4
267
Tumor
-0.4
171
Tumor
-0.4
385
Tumor
-0.4
545
Tumor
-0.4
883
Tumor
-0.4
743
Tumor
-0.4
983
Tumor
-0.4
497
Tumor
-0.4
423
Tumor
-0.4
231
Tumor
-0.5
223
Tumor
-0.5
685
Tumor
-0.6
615
Tumor
-0.6
411
Tumor
-0.6
567
Tumor
-0.6
341
Tumor
-0.6
965
Tumor
-0.7
535
Tumor
-0.8
351
Tumor
-0.9
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
