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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
THYN1 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
28.6
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
85.7
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
80.9
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
64.9
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
62.7
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
61.9
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
61.3
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
59.4
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
57.7
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
55.0
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
54.4
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
53.6
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
53.5
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
53.4
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
52.2
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
51.6
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
49.9
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
49.6
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
49.0
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
48.6
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
48.3
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
47.7
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
47.7
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
47.4
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
45.7
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
45.4
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
45.2
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
44.7
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
44.3
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
44.0
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
43.9
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
43.8
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
43.6
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
43.0
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
42.9
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
42.7
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
42.4
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
42.0
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
42.0
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
41.9
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
41.7
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
41.6
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
41.6
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
41.1
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
40.7
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
40.7
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
40.5
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
40.4
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
39.8
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
39.6
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
39.5
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
39.3
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
39.1
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
39.0
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
38.9
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
38.9
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
38.9
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
38.9
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
38.7
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
38.5
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
38.5
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
38.1
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
38.1
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
37.6
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
37.2
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
37.1
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
37.1
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
37.0
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
36.8
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
36.6
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
36.5
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
36.2
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
36.2
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
36.1
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
36.0
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
35.9
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
35.7
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
35.7
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
35.7
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
35.6
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
35.6
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
35.5
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
35.4
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
35.4
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
35.0
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
34.9
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
34.9
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
34.7
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
34.5
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
34.5
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
34.4
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
34.3
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
34.3
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
34.2
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
34.1
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
34.1
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
34.1
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
34.0
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
34.0
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
33.9
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
33.6
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
33.6
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
33.2
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
33.2
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
33.2
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
33.1
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
33.1
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
33.1
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
33.0
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
33.0
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
32.8
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
32.8
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
32.8
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
32.7
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
32.5
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
32.4
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
32.4
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
32.4
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
32.2
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
32.2
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
32.0
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
31.9
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
31.6
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
31.5
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
31.5
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
31.5
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
31.5
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
31.4
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
31.2
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
31.1
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
30.8
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
30.8
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
30.7
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
30.6
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
30.5
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
30.5
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
30.4
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
30.4
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
30.2
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
30.1
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
30.1
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
30.0
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
30.0
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
29.9
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
29.8
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
29.8
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
29.8
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
29.7
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
29.6
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
29.4
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
29.4
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
29.3
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
29.2
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
29.1
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
29.0
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
28.8
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
28.8
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
28.7
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
28.6
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
28.3
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
28.2
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
28.2
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
28.2
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
28.1
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
28.1
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
28.0
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
28.0
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
28.0
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
27.9
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
27.8
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
27.8
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
27.7
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
27.7
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
27.4
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
27.4
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
27.3
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
27.3
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
27.3
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
27.0
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
27.0
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
26.9
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
26.9
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
26.7
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
26.5
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
26.5
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
26.5
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
26.5
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
26.4
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
26.4
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
26.2
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
26.1
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
26.1
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
26.0
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
25.9
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
25.8
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
25.8
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
25.8
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
25.6
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
25.5
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
25.4
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
25.3
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
25.3
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
25.3
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
25.3
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
24.9
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
24.9
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
24.9
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
24.8
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
24.7
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
24.7
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
24.5
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
24.4
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
24.4
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
24.3
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
24.3
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
24.2
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
24.2
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
24.1
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
24.0
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
24.0
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
24.0
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
23.9
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
23.8
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
23.8
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
23.7
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
23.7
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
23.7
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
23.6
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
23.6
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
23.6
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
23.6
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
23.4
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
23.2
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
23.1
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
23.1
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
23.0
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
22.9
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
22.9
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
22.7
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
22.6
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
22.5
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
22.5
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
22.4
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
22.4
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
22.4
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
22.4
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
22.2
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
22.2
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
22.2
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
22.2
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
22.2
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
22.1
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
22.1
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
22.1
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
22.0
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
21.8
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
21.8
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
21.7
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
21.7
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
21.7
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
21.6
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
21.5
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
21.4
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
21.3
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
21.2
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
21.1
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
21.1
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
21.0
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
20.9
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
20.9
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
20.8
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
20.8
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
20.6
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
20.6
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
20.5
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
20.4
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
20.4
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
20.3
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
20.2
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
20.2
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
20.1
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
20.0
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
19.9
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
19.9
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
19.8
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
19.8
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
19.8
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
19.7
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
19.6
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
19.6
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
19.6
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
19.6
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
19.5
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
19.5
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
19.5
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
19.4
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
19.4
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
19.4
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
19.3
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
19.3
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
19.2
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
19.1
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
19.1
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
19.0
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
19.0
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
18.9
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
18.9
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
18.9
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
18.8
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
18.5
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
18.5
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
18.3
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
18.3
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
18.3
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
18.2
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
18.1
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
18.1
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
18.0
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
18.0
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
17.9
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
17.9
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
17.5
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
17.3
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
17.3
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
17.3
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
17.2
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
17.2
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
17.1
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
16.8
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
16.7
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
16.7
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
16.6
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
16.6
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
16.5
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
16.5
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
16.3
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
16.3
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
16.2
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
15.9
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
15.7
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
15.4
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
15.2
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
15.1
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
15.1
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
15.1
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
14.9
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
14.4
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
13.6
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
13.3
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
13.2
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
13.1
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
13.0
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
12.8
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
12.3
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
11.6
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
11.1
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
11.0
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
10.8
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
10.3
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
9.8
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
9.6
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
8.9
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
THYN1 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
27.1
Number of samples
231
Samples
Sample
Description
TPM
DO23532
0 years, female, NA, stage:1, alive, 960 days
83.2
DO23534
0 years, male, NA, stage:2, alive, 840 days
63.3
DO45285
0 years, male, NA, stage:3, alive, 480 days
60.9
DO48715
0 years, female, NA, stage:2, dead, 690 days
60.8
DO45179
0 years, female, NA, stage:2, alive, 600 days
59.5
DO45183
0 years, female, NA, stage:2, dead, 570 days
59.4
DO50839
0 years, female, NA, stage:3, alive, 330 days
57.6
DO45107
0 years, female, NA, stage:2, alive, 1710 days
57.0
DO45185
0 years, male, NA, stage:2, alive, 600 days
54.4
DO45209
0 years, male, NA, stage:4, alive, 1350 days
53.3
DO23515
0 years, male, NA, stage:2, alive, 1230 days
51.6
DO50820
0 years, female, NA, stage:3, alive, 510 days
49.7
DO45307
0 years, female, NA, stage:4, dead, 240 days
47.5
DO50816
0 years, male, NA, stage:2, alive, 390 days
47.0
DO45127
0 years, male, NA, stage:3, dead, 420 days
45.0
DO48747
0 years, male, NA, stage:3, alive, 540 days
44.4
DO23536
0 years, male, NA, stage:2, alive, 930 days
43.5
DO23513
0 years, male, NA, stage:3, alive, 1200 days
42.9
DO48706
0 years, male, NA, stage:2, alive, 870 days
42.9
DO48674
0 years, male, NA, stage:2, alive, 1260 days
42.2
DO23537
0 years, male, NA, stage:2, dead, 900 days
41.5
DO50855
0 years, male, NA, stage:2, alive, 570 days
41.2
DO45145
0 years, male, NA, stage:3, dead, 60 days
40.7
DO45265
0 years, male, NA, stage:3, alive, 1020 days
40.3
DO45287
0 years, male, NA, stage:1, alive, 390 days
39.4
DO50791
0 years, female, NA, stage:1, dead, 480 days
38.4
DO48757
0 years, female, NA, stage:3, alive, 480 days
37.7
DO50814
0 years, male, NA, stage:3, alive, 420 days
37.3
DO45281
0 years, male, NA, stage:4, alive, 750 days
36.3
DO23519
0 years, male, NA, stage:3, alive, 630 days
36.3
DO23523
0 years, male, NA, stage:3, alive, 1080 days
36.2
DO45227
0 years, female, NA, stage:2, alive, 1020 days
35.9
DO48679
0 years, male, NA, stage:2, alive, 1200 days
35.5
DO45177
0 years, female, NA, stage:3, alive, 1260 days
35.2
DO23508
0 years, female, NA, stage:2, alive, 390 days
35.2
DO45096
0 years, male, NA, stage:2, dead, 1290 days
35.1
DO45097
0 years, male, NA, stage:3, alive, 1620 days
34.9
DO48712
0 years, male, NA, stage:2, alive, 810 days
34.8
DO45289
0 years, female, NA, stage:3, alive, 360 days
34.5
DO48723
0 years, male, NA, stage:1, alive, 600 days
34.5
DO23539
0 years, male, NA, stage:1, alive, 1110 days
34.1
DO45215
0 years, male, NA, stage:2, alive, 1170 days
34.0
DO23514
0 years, male, NA, stage:2, alive, 1290 days
33.8
DO45249
0 years, male, NA, stage:1, alive, 630 days
33.8
DO45251
0 years, female, NA, stage:2, alive, 900 days
33.6
DO23526
0 years, male, NA, stage:3, alive, 1050 days
33.4
DO48736
0 years, female, NA, stage:1, alive, 600 days
33.2
DO23548
0 years, female, NA, stage:1, alive, 840 days
33.1
DO45092
0 years, male, NA, stage:4, dead, 1200 days
33.1
DO48725
0 years, male, NA, stage:1, alive, 780 days
33.0
DO48760
0 years, female, NA, stage:2, alive, 690 days
32.9
DO48759
0 years, male, NA, stage:3, alive, 720 days
32.8
DO50806
0 years, male, NA, stage:4, alive, 540 days
32.8
DO48697
0 years, female, NA, stage:2, dead, 810 days
32.8
DO45269
0 years, male, NA, stage:3, alive, 750 days
32.7
DO45273
0 years, male, NA, stage:2, alive, 480 days
32.3
DO50829
0 years, male, NA, stage:3, alive, 570 days
32.2
DO23531
0 years, female, NA, stage:3, alive, 900 days
32.1
DO50808
0 years, male, NA, stage:2, alive, 570 days
32.0
DO45173
0 years, male, NA, stage:3, alive, 1170 days
31.8
DO23525
0 years, male, NA, stage:4, alive, 1050 days
31.8
DO45181
0 years, female, NA, stage:2, alive, 1200 days
31.7
DO23546
0 years, male, NA, stage:2, alive, 1050 days
31.6
DO45109
0 years, male, NA, stage:2, alive, 1590 days
31.5
DO50793
0 years, male, NA, stage:4, alive, 540 days
31.5
DO45129
0 years, male, NA, stage:3, alive, 1470 days
31.3
DO50776
0 years, male, NA, stage:1, alive, 690 days
31.2
DO45141
0 years, male, NA, stage:2, alive, 1320 days
30.8
DO50832
0 years, male, NA, stage:3, alive, 90 days
30.7
DO45219
0 years, male, NA, stage:2, alive, 1080 days
30.6
DO50818
0 years, male, NA, stage:2, alive, 510 days
30.5
DO50800
0 years, male, NA, stage:2, alive, 510 days
30.5
DO48701
0 years, male, NA, stage:2, alive, 780 days
30.3
DO45189
0 years, female, NA, stage:2, alive, 1200 days
30.3
DO23545
0 years, male, NA, stage:2, dead, 570 days
30.3
DO50783
0 years, male, NA, stage:3, alive, 480 days
30.2
DO45275
0 years, male, NA, stage:3, dead, 10 days
30.2
DO45094
0 years, male, NA, stage:3, alive, 1650 days
30.1
DO45095
0 years, male, NA, stage:2, alive, 1620 days
29.9
DO45255
0 years, male, NA, stage:3, alive, 720 days
29.8
DO23547
0 years, male, NA, stage:1, alive, 1020 days
29.7
DO23524
0 years, female, NA, stage:2, alive, 1050 days
29.7
DO45303
0 years, female, NA, stage:3, alive, 990 days
29.5
DO23551
0 years, male, NA, stage:3, dead, 150 days
29.2
DO45101
0 years, male, NA, stage:2, alive, 1680 days
28.9
DO50822
0 years, male, NA, stage:2, alive, 510 days
28.7
DO45125
0 years, male, NA, stage:3, alive, 1680 days
28.6
DO45229
0 years, male, NA, stage:1, alive, 990 days
28.3
DO45133
0 years, male, NA, stage:3, dead, 660 days
28.2
DO50802
0 years, male, NA, stage:2, alive, 930 days
28.0
DO23552
0 years, female, NA, stage:1, alive, 810 days
28.0
DO50815
0 years, male, NA, stage:3, alive, 150 days
27.9
DO50813
0 years, male, NA, stage:2, alive, 420 days
27.8
DO23543
0 years, male, NA, stage:2, alive, 1020 days
27.6
DO23530
0 years, male, NA, stage:4, dead, 180 days
27.3
DO45243
0 years, female, NA, stage:3, alive, 930 days
27.2
DO48717
0 years, male, NA, stage:4, dead, 180 days
27.2
DO45149
0 years, female, NA, stage:2, alive, 1260 days
27.1
DO50789
0 years, female, NA, stage:2, alive, 570 days
26.9
DO45299
0 years, female, NA, stage:1, alive, 1440 days
26.8
DO23550
0 years, male, NA, stage:1, alive, 990 days
26.7
DO23535
0 years, male, NA, stage:1, alive, 960 days
26.6
DO50778
0 years, male, NA, stage:4, alive, 630 days
26.6
DO45135
0 years, male, NA, stage:1, alive, 1410 days
26.6
DO45305
0 years, male, NA, stage:4, alive, 300 days
26.4
DO45211
0 years, male, NA, stage:3, alive, 240 days
26.4
DO23510
0 years, female, NA, stage:2, alive, 870 days
26.3
DO45297
0 years, female, NA, stage:4, dead, 1260 days
26.2
DO45155
0 years, male, NA, stage:2, alive, 2160 days
26.2
DO23533
0 years, male, NA, stage:2, alive, 900 days
26.2
DO50787
0 years, male, NA, stage:3, alive, 480 days
26.2
DO48695
0 years, male, NA, stage:2, alive, 720 days
26.1
DO45105
0 years, male, NA, stage:1, alive, 1680 days
26.0
DO45223
0 years, male, NA, stage:4, alive, 1020 days
25.8
DO45143
0 years, male, NA, stage:3, alive, 1290 days
25.5
DO50825
0 years, male, NA, stage:2, alive, 390 days
25.4
DO48737
0 years, male, NA, stage:1, alive, 720 days
25.4
DO45161
0 years, male, NA, stage:2, dead, 540 days
25.3
DO48733
0 years, male, NA, stage:2, alive, 600 days
25.2
DO50845
0 years, male, NA, stage:3, alive, 210 days
25.2
DO48730
0 years, female, NA, stage:2, alive, 630 days
25.1
DO48677
0 years, male, NA, stage:3, alive, 1140 days
24.9
DO23540
0 years, male, NA, stage:1, alive, 750 days
24.8
DO45203
0 years, female, NA, stage:2, alive, 1170 days
24.7
DO48741
0 years, male, NA, stage:3, alive, 240 days
24.7
DO45187
0 years, female, NA, stage:1, alive, 1260 days
24.6
DO45207
0 years, male, NA, stage:1, alive, 1050 days
24.6
DO45205
0 years, female, NA, stage:2, dead, 90 days
24.4
DO45201
0 years, male, NA, stage:1, alive, 900 days
24.1
DO50799
0 years, female, NA, stage:2, alive, 540 days
24.1
DO45153
0 years, female, NA, stage:2, alive, 1380 days
24.0
DO45257
0 years, male, NA, stage:3, alive, 810 days
23.9
DO45277
0 years, male, NA, stage:3, alive, 600 days
23.8
DO23517
0 years, male, NA, stage:2, alive, 1200 days
23.8
DO45165
0 years, male, NA, stage:2, alive, 690 days
23.7
DO23542
0 years, male, NA, stage:3, alive, 960 days
23.6
DO48721
0 years, female, NA, stage:1, alive, 900 days
23.4
DO45301
0 years, male, NA, stage:2, dead, 1440 days
23.4
DO45235
0 years, female, NA, stage:1, alive, 900 days
23.3
DO45103
0 years, male, NA, stage:3, alive, 450 days
23.0
DO48716
0 years, male, NA, stage:2, alive, 720 days
22.9
DO45261
0 years, male, NA, stage:3, alive, 990 days
22.9
DO50844
0 years, male, NA, stage:4, alive, 300 days
22.7
DO50811
0 years, male, NA, stage:1, alive, 450 days
22.5
DO50817
0 years, male, NA, stage:2, alive, 390 days
22.4
DO48732
0 years, male, NA, stage:3, alive, 630 days
22.3
DO48720
0 years, female, NA, stage:2, alive, 570 days
22.2
DO50809
0 years, male, NA, stage:3, dead, 720 days
22.2
DO45171
0 years, male, NA, stage:3, alive, 600 days
22.1
DO50807
0 years, male, NA, stage:1, alive, 540 days
22.1
DO45217
0 years, female, NA, stage:3, dead, 270 days
22.1
DO45137
0 years, male, NA, stage:1, alive, 1320 days
21.8
DO50850
0 years, male, NA, stage:3, alive, 720 days
21.7
DO45221
0 years, female, NA, stage:4, dead, 390 days
21.3
DO23528
0 years, female, NA, stage:2, alive, 1020 days
21.3
DO48761
0 years, male, NA, stage:2, alive, 870 days
21.3
DO48728
0 years, female, NA, stage:2, alive, 150 days
21.1
DO48672
0 years, male, NA, stage:2, alive, 450 days
21.0
DO48742
0 years, male, NA, stage:2, alive, 600 days
20.9
DO45253
0 years, male, NA, stage:2, alive, 870 days
20.9
DO45123
0 years, female, NA, stage:2, dead, 570 days
20.9
DO23549
0 years, male, NA, stage:3, alive, 990 days
20.8
DO48719
0 years, male, NA, stage:2, alive, 690 days
20.8
DO23538
0 years, male, NA, stage:2, alive, 450 days
20.7
DO48693
0 years, male, NA, stage:2, alive, 900 days
20.7
DO45091
0 years, male, NA, stage:2, dead, 1320 days
20.7
DO227643
0 years, male, NA, stage:2, alive, 1260 days
20.6
DO23541
0 years, male, NA, stage:2, alive, 930 days
20.4
DO45283
0 years, male, NA, stage:3, alive, 510 days
20.4
DO48746
0 years, male, NA, stage:3, alive, 570 days
20.3
DO23521
0 years, male, NA, stage:3, alive, 1110 days
20.2
DO45213
0 years, male, NA, stage:1, alive, 1200 days
20.1
DO45121
0 years, male, NA, stage:3, alive, 1530 days
19.8
DO45231
0 years, male, NA, stage:2, alive, 930 days
19.6
DO48727
0 years, female, NA, stage:2, dead, 390 days
19.5
DO45279
0 years, male, NA, stage:3, alive, 1290 days
19.4
DO50803
0 years, female, NA, stage:1, alive, 540 days
19.4
DO45099
0 years, male, NA, stage:3, alive, 1590 days
19.4
DO50804
0 years, male, NA, stage:2, alive, 720 days
19.1
DO45241
0 years, male, NA, stage:1, alive, 1080 days
18.9
DO45139
0 years, male, NA, stage:3, alive, 1320 days
18.9
DO45233
0 years, male, NA, stage:3, alive, 900 days
18.6
DO48681
0 years, male, NA, stage:2, alive, 900 days
18.6
DO45193
0 years, female, NA, stage:4, dead, 120 days
18.6
DO50805
0 years, male, NA, stage:2, alive, 690 days
18.5
DO50857
0 years, male, NA, stage:2, alive, 210 days
18.3
DO227801
0 years, female, NA, stage:1, alive, 660 days
18.2
DO45247
0 years, female, NA, stage:2, alive, 210 days
18.2
DO23527
0 years, male, NA, stage:1, alive, 1050 days
18.1
DO48700
0 years, female, NA, stage:2, alive, 810 days
18.0
DO50819
0 years, female, NA, stage:2, alive, 510 days
18.0
DO45163
0 years, male, NA, stage:2, alive, 960 days
17.9
DO50798
0 years, male, NA, stage:3, dead, 30 days
17.9
DO45119
0 years, male, NA, stage:3, dead, 510 days
17.8
DO23512
0 years, male, NA, stage:1, alive, 1260 days
17.5
DO23529
0 years, male, NA, stage:4, alive, 930 days
17.4
DO45167
0 years, male, NA, stage:2, dead, 1440 days
17.3
DO45159
0 years, male, NA, stage:3, alive, 1470 days
17.3
DO50859
0 years, male, NA, stage:2, alive, 180 days
17.0
DO45195
0 years, male, NA, stage:1, alive, 390 days
17.0
DO45169
0 years, male, NA, stage:3, alive, 1350 days
16.9
DO45199
0 years, female, NA, stage:2, alive, 1350 days
16.7
DO48704
0 years, female, NA, stage:3, alive, 750 days
16.6
DO50774
0 years, female, NA, stage:2, alive, 720 days
16.5
DO45117
0 years, female, NA, stage:2, dead, 1110 days
16.3
DO45131
0 years, male, NA, stage:4, dead, 360 days
16.1
DO45115
0 years, male, NA, stage:2, alive, 840 days
15.8
DO45113
0 years, male, NA, stage:3, alive, 1560 days
15.7
DO23518
0 years, male, NA, stage:2, alive, 1320 days
15.6
DO45259
0 years, male, NA, stage:3, alive, 330 days
15.5
DO45157
0 years, male, NA, stage:2, alive, 1980 days
15.4
DO23544
0 years, male, NA, stage:2, alive, 960 days
14.7
DO45111
0 years, male, NA, stage:2, alive, 1590 days
14.6
DO23511
0 years, female, NA, stage:3, dead, 180 days
14.6
DO45267
0 years, male, NA, stage:3, dead, 570 days
14.4
DO45263
0 years, male, NA, stage:3, dead, 270 days
14.4
DO45225
0 years, male, NA, stage:1, alive, 1050 days
14.3
DO48743
0 years, female, NA, stage:2, alive, 570 days
14.2
DO48751
0 years, male, NA, stage:2, dead, 480 days
14.2
DO45245
0 years, female, NA, stage:2, dead, 240 days
13.6
DO48682
0 years, female, NA, stage:3, dead, 120 days
13.4
DO50840
0 years, male, NA, stage:2, alive, 330 days
13.2
DO45175
0 years, male, NA, stage:2, alive, 1140 days
12.5
DO45239
0 years, male, NA, stage:2, alive, 870 days
12.5
DO45093
0 years, male, NA, stage:2, dead, 720 days
11.4
DO45237
0 years, male, NA, stage:2, alive, 900 days
10.8
DO23516
0 years, male, NA, stage:3, dead, 20 days
10.5
DO45191
0 years, female, NA, stage:2, alive, 1200 days
10.3
DO23509
0 years, male, NA, stage:3, dead, 780 days
9.1
DO45197
0 years, male, NA, stage:2, alive, 1170 days
8.6
DO50785
0 years, male, NA, stage:4, dead, 90 days
7.2
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
473
Tumor
1.0
553
Tumor
1.0
1031
Tumor
0.9
487
Tumor
0.8
865
Tumor
0.8
921
Tumor
0.8
741
Tumor
0.7
863
Tumor
0.7
523
Tumor
0.6
425
Tumor
0.6
661
Tumor
0.6
415
Tumor
0.6
513
Tumor
0.6
1041
Tumor
0.5
211
Tumor
0.5
737
Tumor
0.5
538
Normal
0.5
431
Tumor
0.5
635
Tumor
0.5
221
Tumor
0.5
387
Tumor
0.5
563
Tumor
0.5
817
Tumor
0.5
533
Tumor
0.5
271
Tumor
0.5
554
Normal
0.5
1043
Tumor
0.4
455
Tumor
0.4
478
Normal
0.4
477
Tumor
0.4
984
Normal
0.4
1025
Tumor
0.4
686
Normal
0.4
867
Tumor
0.4
746
Normal
0.4
744
Normal
0.4
1015
Tumor
0.4
517
Tumor
0.4
536
Normal
0.4
1021
Tumor
0.4
524
Normal
0.4
698
Normal
0.4
516
Normal
0.3
141
Tumor
0.3
135
Tumor
0.3
977
Tumor
0.3
738
Normal
0.3
938
Normal
0.3
636
Normal
0.3
185
Tumor
0.3
877
Tumor
0.3
124
Normal
0.3
824
Normal
0.3
443
Tumor
0.3
955
Tumor
0.3
858
Normal
0.3
917
Tumor
0.3
696
Normal
0.3
958
Normal
0.3
951
Tumor
0.3
488
Normal
0.3
952
Normal
0.3
966
Normal
0.3
1045
Tumor
0.3
537
Tumor
0.3
131
Tumor
0.3
484
Normal
0.3
617
Tumor
0.3
695
Tumor
0.3
465
Tumor
0.2
878
Normal
0.2
186
Normal
0.2
818
Normal
0.2
162
Normal
0.2
925
Tumor
0.2
778
Normal
0.2
572
Normal
0.2
954
Normal
0.2
924
Normal
0.2
1014
Normal
0.2
1022
Normal
0.2
716
Normal
0.2
861
Tumor
0.2
412
Normal
0.2
331
Tumor
0.2
963
Tumor
0.2
355
Tumor
0.2
191
Tumor
0.2
881
Tumor
0.2
742
Normal
0.2
546
Normal
0.2
364
Normal
0.2
913
Tumor
0.2
515
Tumor
0.2
416
Normal
0.2
471
Tumor
0.2
1032
Normal
0.2
785
Tumor
0.2
467
Tumor
0.2
481
Tumor
0.2
967
Tumor
0.2
534
Normal
0.2
922
Normal
0.2
1028
Normal
0.2
968
Normal
0.2
472
Normal
0.2
912
Normal
0.2
285
Tumor
0.2
714
Normal
0.2
862
Normal
0.2
944
Normal
0.2
816
Normal
0.2
192
Normal
0.2
1046
Normal
0.2
483
Tumor
0.2
918
Normal
0.2
328
Normal
0.2
482
Normal
0.2
195
Tumor
0.2
498
Normal
0.2
356
Normal
0.2
911
Tumor
0.2
663
Tumor
0.2
641
Tumor
0.1
866
Normal
0.1
313
Tumor
0.1
128
Normal
0.1
142
Normal
0.1
723
Tumor
0.1
148
Normal
0.1
311
Tumor
0.1
545
Tumor
0.1
756
Normal
0.1
492
Normal
0.1
172
Normal
0.1
874
Normal
0.1
628
Normal
0.1
1026
Normal
0.1
161
Tumor
0.1
494
Normal
0.1
1042
Normal
0.1
433
Tumor
0.1
864
Normal
0.1
222
Normal
0.1
975
Tumor
0.1
916
Normal
0.1
1013
Tumor
0.1
672
Normal
0.1
882
Normal
0.1
171
Tumor
0.1
662
Normal
0.1
528
Normal
0.1
518
Normal
0.1
514
Normal
0.1
964
Normal
0.1
444
Normal
0.1
823
Tumor
0.1
664
Normal
0.1
218
Normal
0.1
1016
Normal
0.1
943
Tumor
0.1
526
Normal
0.1
558
Normal
0.1
685
Tumor
0.1
715
Tumor
0.1
474
Normal
0.1
448
Normal
0.1
462
Normal
0.1
277
Tumor
0.0
268
Normal
0.0
884
Normal
0.0
981
Tumor
0.0
146
Normal
0.0
344
Normal
0.0
852
Normal
0.0
915
Tumor
0.0
1044
Normal
0.0
926
Normal
0.0
976
Normal
0.0
342
Normal
0.0
786
Normal
0.0
127
Tumor
0.0
196
Normal
0.0
464
Normal
0.0
815
Tumor
0.0
648
Normal
0.0
434
Normal
0.0
351
Tumor
0.0
618
Normal
0.0
456
Normal
0.0
188
Normal
0.0
728
Normal
0.0
743
Tumor
0.0
857
Tumor
0.0
814
Normal
0.0
224
Normal
0.0
574
Normal
0.0
396
Normal
0.0
435
Tumor
0.0
298
Normal
0.0
214
Normal
0.0
137
Tumor
0.0
352
Normal
0.0
261
Tumor
0.0
451
Tumor
0.0
463
Tumor
0.0
426
Normal
0.0
126
Normal
0.0
647
Tumor
0.0
461
Tumor
0.0
978
Normal
0.0
445
Tumor
0.0
363
Tumor
0.0
568
Normal
0.0
376
Normal
0.0
227
Tumor
0.0
727
Tumor
0.0
868
Normal
0.0
923
Tumor
0.0
411
Tumor
0.0
722
Normal
0.0
386
Normal
0.0
755
Tumor
0.0
228
Normal
-0.1
424
Normal
-0.1
446
Normal
-0.1
873
Tumor
-0.1
217
Tumor
-0.1
138
Normal
-0.1
123
Tumor
-0.1
466
Normal
-0.1
187
Tumor
-0.1
361
Tumor
-0.1
132
Normal
-0.1
312
Normal
-0.1
212
Normal
-0.1
392
Normal
-0.1
232
Normal
-0.1
914
Normal
-0.1
284
Normal
-0.1
428
Normal
-0.1
136
Normal
-0.1
332
Normal
-0.1
452
Normal
-0.1
436
Normal
-0.1
627
Tumor
-0.1
327
Tumor
-0.1
213
Tumor
-0.1
447
Tumor
-0.1
111
Normal
-0.1
616
Normal
-0.1
384
Normal
-0.1
777
Tumor
-0.1
956
Normal
-0.1
713
Tumor
-0.1
937
Tumor
-0.1
468
Normal
-0.1
421
Tumor
-0.1
423
Tumor
-0.1
113
Tumor
-0.1
114
Normal
-0.1
564
Normal
-0.1
278
Normal
-0.1
813
Tumor
-0.1
422
Normal
-0.1
272
Normal
-0.1
354
Normal
-0.1
957
Tumor
-0.1
721
Tumor
-0.1
358
Normal
-0.1
642
Normal
-0.1
394
Normal
-0.1
297
Tumor
-0.2
983
Tumor
-0.2
147
Tumor
-0.2
883
Tumor
-0.2
493
Tumor
-0.2
365
Tumor
-0.2
388
Normal
-0.2
357
Tumor
-0.2
427
Tumor
-0.2
362
Normal
-0.2
497
Tumor
-0.2
1027
Tumor
-0.2
535
Tumor
-0.2
385
Tumor
-0.2
286
Normal
-0.2
745
Tumor
-0.2
262
Normal
-0.2
571
Tumor
-0.2
314
Normal
-0.2
112
Tumor
-0.2
231
Tumor
-0.2
375
Tumor
-0.2
368
Normal
-0.2
982
Normal
-0.2
432
Normal
-0.3
125
Tumor
-0.3
395
Tumor
-0.3
145
Tumor
-0.3
414
Normal
-0.3
383
Tumor
-0.3
257
Tumor
-0.3
965
Tumor
-0.3
367
Tumor
-0.3
557
Tumor
-0.3
353
Tumor
-0.3
413
Tumor
-0.3
391
Tumor
-0.3
258
Normal
-0.3
525
Tumor
-0.4
697
Tumor
-0.4
366
Normal
-0.4
393
Tumor
-0.4
283
Tumor
-0.4
491
Tumor
-0.5
851
Tumor
-0.5
615
Tumor
-0.5
527
Tumor
-0.5
267
Tumor
-0.5
724
Normal
-0.5
671
Tumor
-0.6
343
Tumor
-0.6
341
Tumor
-0.6
665
Tumor
-0.6
573
Tumor
-0.7
223
Tumor
-0.7
953
Tumor
-0.7
567
Tumor
-0.7
666
Normal
-0.9
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
