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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
FRMD4A is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
5.8
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
54.6
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
52.2
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
48.2
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
46.4
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
40.5
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
39.7
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
35.5
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
32.2
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
30.2
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
27.6
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
25.2
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
24.2
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
22.8
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
21.5
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
20.9
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
18.8
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
17.4
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
16.7
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
16.5
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
16.3
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
14.6
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
14.6
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
14.6
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
14.2
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
14.2
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
14.0
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
13.2
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
13.1
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
12.7
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
12.4
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
12.3
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
12.3
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
12.1
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
11.7
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
11.5
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
11.4
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
11.4
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
11.1
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
11.0
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
10.9
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
10.8
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
10.7
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
10.7
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
10.7
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
10.7
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
10.6
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
10.1
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
9.9
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
9.8
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
9.7
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
9.7
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
9.5
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
9.3
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
9.3
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
9.2
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
9.0
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
8.8
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
8.8
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
8.8
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
8.7
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
8.7
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
8.6
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
8.6
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
8.2
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
8.2
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
8.2
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
8.2
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
8.1
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
8.1
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
8.1
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
8.1
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
8.0
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
8.0
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
8.0
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
7.9
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
7.8
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
7.8
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
7.7
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
7.6
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
7.6
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
7.5
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
7.4
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
7.4
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
7.4
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
7.3
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
7.3
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
7.2
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
7.2
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
7.2
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
7.1
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
7.1
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
7.1
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
7.0
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
7.0
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
7.0
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
6.9
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
6.9
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
6.9
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
6.8
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
6.7
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
6.6
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
6.6
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
6.5
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
6.5
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
6.4
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
6.4
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
6.3
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
6.3
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
6.2
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
6.2
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
6.1
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
6.0
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
6.0
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
6.0
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
6.0
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
5.9
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
5.9
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
5.8
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
5.8
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
5.8
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
5.7
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
5.7
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
5.6
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
5.6
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
5.6
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
5.6
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
5.4
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
5.4
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
5.4
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
5.3
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
5.3
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
5.3
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
5.2
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
5.2
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
5.2
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
5.2
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
5.2
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
5.2
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
5.2
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
5.1
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
5.1
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
5.1
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
5.0
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
5.0
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
4.8
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
4.8
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
4.8
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
4.7
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
4.7
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
4.7
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
4.7
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
4.7
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
4.7
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
4.7
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
4.7
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
4.6
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
4.6
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
4.6
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
4.6
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
4.5
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
4.5
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
4.4
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
4.4
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
4.4
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
4.4
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
4.4
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
4.3
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
4.2
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
4.2
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
4.2
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
4.1
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
4.1
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
4.1
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
4.0
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
4.0
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
4.0
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
4.0
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
4.0
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
4.0
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
4.0
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
3.9
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
3.9
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
3.9
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
3.9
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
3.9
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
3.9
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
3.8
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
3.8
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
3.8
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
3.8
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
3.7
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
3.7
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
3.6
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
3.5
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
3.5
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
3.5
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
3.5
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
3.5
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
3.5
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
3.5
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
3.5
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
3.3
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
3.3
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
3.3
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
3.3
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
3.3
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
3.2
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
3.2
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
3.2
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
3.2
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
3.1
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
3.1
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
3.1
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
3.1
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
3.1
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
3.0
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
3.0
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
3.0
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
2.9
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
2.9
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
2.8
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
2.8
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
2.8
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
2.8
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
2.7
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
2.7
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
2.7
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
2.7
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
2.7
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
2.7
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
2.7
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
2.6
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
2.6
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
2.6
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
2.6
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
2.6
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
2.6
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
2.5
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
2.5
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
2.5
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
2.5
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
2.4
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
2.4
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
2.4
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
2.4
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
2.3
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
2.3
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
2.3
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
2.3
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
2.3
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
2.3
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
2.3
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
2.3
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
2.2
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
2.2
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
2.2
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
2.1
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
2.1
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
2.1
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
2.0
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
2.0
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
2.0
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
2.0
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
2.0
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
2.0
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
1.9
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
1.9
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
1.9
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
1.9
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
1.9
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
1.9
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
1.8
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
1.8
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
1.8
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
1.8
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
1.8
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
1.8
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
1.8
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
1.8
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
1.8
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
1.8
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
1.8
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
1.8
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
1.7
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
1.7
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
1.7
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
1.7
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
1.7
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
1.7
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
1.7
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
1.7
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
1.7
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
1.7
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
1.6
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
1.6
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
1.6
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
1.6
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
1.5
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
1.5
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
1.5
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
1.5
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
1.5
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
1.4
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
1.4
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
1.4
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
1.4
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
1.4
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
1.3
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
1.3
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
1.3
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
1.3
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
1.3
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
1.3
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
1.2
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
1.2
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
1.2
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
1.1
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
1.1
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
1.1
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
1.1
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
1.1
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
1.1
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
1.0
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
1.0
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
1.0
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
1.0
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
0.9
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
0.9
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
0.9
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
0.9
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
0.9
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
0.9
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
0.9
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
0.9
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
0.8
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
0.8
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
0.8
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
0.8
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
0.8
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
0.8
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
0.8
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
0.8
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
0.8
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
0.7
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
0.7
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
0.7
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
0.6
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
0.6
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
0.5
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
0.5
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
0.5
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
0.5
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
0.5
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
0.5
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
0.4
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
0.4
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
0.4
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
0.4
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
0.3
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
0.3
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
0.2
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
FRMD4A is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
5.4
Number of samples
231
Samples
Sample
Description
TPM
DO45205
0 years, female, NA, stage:2, dead, 90 days
55.0
DO45185
0 years, male, NA, stage:2, alive, 600 days
31.6
DO45259
0 years, male, NA, stage:3, alive, 330 days
26.2
DO45189
0 years, female, NA, stage:2, alive, 1200 days
24.8
DO23526
0 years, male, NA, stage:3, alive, 1050 days
21.8
DO45249
0 years, male, NA, stage:1, alive, 630 days
21.2
DO45251
0 years, female, NA, stage:2, alive, 900 days
19.5
DO45155
0 years, male, NA, stage:2, alive, 2160 days
18.9
DO23547
0 years, male, NA, stage:1, alive, 1020 days
18.5
DO23523
0 years, male, NA, stage:3, alive, 1080 days
16.5
DO45289
0 years, female, NA, stage:3, alive, 360 days
15.6
DO50855
0 years, male, NA, stage:2, alive, 570 days
13.6
DO45273
0 years, male, NA, stage:2, alive, 480 days
12.7
DO23548
0 years, female, NA, stage:1, alive, 840 days
12.0
DO45277
0 years, male, NA, stage:3, alive, 600 days
11.5
DO45279
0 years, male, NA, stage:3, alive, 1290 days
11.4
DO23535
0 years, male, NA, stage:1, alive, 960 days
10.8
DO45159
0 years, male, NA, stage:3, alive, 1470 days
10.8
DO50800
0 years, male, NA, stage:2, alive, 510 days
10.3
DO23532
0 years, female, NA, stage:1, alive, 960 days
9.6
DO45125
0 years, male, NA, stage:3, alive, 1680 days
9.5
DO48720
0 years, female, NA, stage:2, alive, 570 days
9.3
DO45303
0 years, female, NA, stage:3, alive, 990 days
9.1
DO45239
0 years, male, NA, stage:2, alive, 870 days
8.9
DO23521
0 years, male, NA, stage:3, alive, 1110 days
8.4
DO50778
0 years, male, NA, stage:4, alive, 630 days
8.3
DO23546
0 years, male, NA, stage:2, alive, 1050 days
8.1
DO45207
0 years, male, NA, stage:1, alive, 1050 days
8.0
DO48728
0 years, female, NA, stage:2, alive, 150 days
7.7
DO23530
0 years, male, NA, stage:4, dead, 180 days
7.5
DO50845
0 years, male, NA, stage:3, alive, 210 days
7.5
DO45121
0 years, male, NA, stage:3, alive, 1530 days
7.5
DO45157
0 years, male, NA, stage:2, alive, 1980 days
7.5
DO48730
0 years, female, NA, stage:2, alive, 630 days
7.4
DO45281
0 years, male, NA, stage:4, alive, 750 days
7.4
DO45243
0 years, female, NA, stage:3, alive, 930 days
7.3
DO50807
0 years, male, NA, stage:1, alive, 540 days
7.2
DO48700
0 years, female, NA, stage:2, alive, 810 days
7.1
DO48697
0 years, female, NA, stage:2, dead, 810 days
7.1
DO48733
0 years, male, NA, stage:2, alive, 600 days
7.0
DO45139
0 years, male, NA, stage:3, alive, 1320 days
7.0
DO50815
0 years, male, NA, stage:3, alive, 150 days
7.0
DO23515
0 years, male, NA, stage:2, alive, 1230 days
6.9
DO45241
0 years, male, NA, stage:1, alive, 1080 days
6.7
DO48701
0 years, male, NA, stage:2, alive, 780 days
6.7
DO45141
0 years, male, NA, stage:2, alive, 1320 days
6.6
DO48736
0 years, female, NA, stage:1, alive, 600 days
6.6
DO45283
0 years, male, NA, stage:3, alive, 510 days
6.5
DO45113
0 years, male, NA, stage:3, alive, 1560 days
6.5
DO45231
0 years, male, NA, stage:2, alive, 930 days
6.5
DO50787
0 years, male, NA, stage:3, alive, 480 days
6.5
DO45177
0 years, female, NA, stage:3, alive, 1260 days
6.5
DO45247
0 years, female, NA, stage:2, alive, 210 days
6.4
DO48732
0 years, male, NA, stage:3, alive, 630 days
6.4
DO45201
0 years, male, NA, stage:1, alive, 900 days
6.4
DO45217
0 years, female, NA, stage:3, dead, 270 days
6.4
DO45103
0 years, male, NA, stage:3, alive, 450 days
6.4
DO48681
0 years, male, NA, stage:2, alive, 900 days
6.4
DO45183
0 years, female, NA, stage:2, dead, 570 days
6.3
DO48682
0 years, female, NA, stage:3, dead, 120 days
6.3
DO23540
0 years, male, NA, stage:1, alive, 750 days
6.2
DO45187
0 years, female, NA, stage:1, alive, 1260 days
6.2
DO23510
0 years, female, NA, stage:2, alive, 870 days
6.2
DO50791
0 years, female, NA, stage:1, dead, 480 days
6.2
DO45213
0 years, male, NA, stage:1, alive, 1200 days
6.1
DO45233
0 years, male, NA, stage:3, alive, 900 days
6.0
DO23531
0 years, female, NA, stage:3, alive, 900 days
5.9
DO45105
0 years, male, NA, stage:1, alive, 1680 days
5.9
DO45181
0 years, female, NA, stage:2, alive, 1200 days
5.8
DO45101
0 years, male, NA, stage:2, alive, 1680 days
5.7
DO45263
0 years, male, NA, stage:3, dead, 270 days
5.7
DO23516
0 years, male, NA, stage:3, dead, 20 days
5.6
DO45094
0 years, male, NA, stage:3, alive, 1650 days
5.6
DO45215
0 years, male, NA, stage:2, alive, 1170 days
5.5
DO45135
0 years, male, NA, stage:1, alive, 1410 days
5.5
DO48695
0 years, male, NA, stage:2, alive, 720 days
5.4
DO45153
0 years, female, NA, stage:2, alive, 1380 days
5.4
DO50819
0 years, female, NA, stage:2, alive, 510 days
5.4
DO45307
0 years, female, NA, stage:4, dead, 240 days
5.4
DO45137
0 years, male, NA, stage:1, alive, 1320 days
5.3
DO45257
0 years, male, NA, stage:3, alive, 810 days
5.3
DO48743
0 years, female, NA, stage:2, alive, 570 days
5.3
DO23551
0 years, male, NA, stage:3, dead, 150 days
5.3
DO50816
0 years, male, NA, stage:2, alive, 390 days
5.1
DO45253
0 years, male, NA, stage:2, alive, 870 days
5.1
DO45191
0 years, female, NA, stage:2, alive, 1200 days
5.1
DO23542
0 years, male, NA, stage:3, alive, 960 days
5.1
DO45209
0 years, male, NA, stage:4, alive, 1350 days
5.0
DO45165
0 years, male, NA, stage:2, alive, 690 days
5.0
DO23524
0 years, female, NA, stage:2, alive, 1050 days
5.0
DO48737
0 years, male, NA, stage:1, alive, 720 days
5.0
DO45149
0 years, female, NA, stage:2, alive, 1260 days
4.8
DO50820
0 years, female, NA, stage:3, alive, 510 days
4.7
DO45227
0 years, female, NA, stage:2, alive, 1020 days
4.7
DO50809
0 years, male, NA, stage:3, dead, 720 days
4.6
DO23511
0 years, female, NA, stage:3, dead, 180 days
4.6
DO23527
0 years, male, NA, stage:1, alive, 1050 days
4.6
DO45203
0 years, female, NA, stage:2, alive, 1170 days
4.6
DO45287
0 years, male, NA, stage:1, alive, 390 days
4.6
DO45107
0 years, female, NA, stage:2, alive, 1710 days
4.6
DO45265
0 years, male, NA, stage:3, alive, 1020 days
4.5
DO23537
0 years, male, NA, stage:2, dead, 900 days
4.5
DO23512
0 years, male, NA, stage:1, alive, 1260 days
4.5
DO45225
0 years, male, NA, stage:1, alive, 1050 days
4.5
DO50822
0 years, male, NA, stage:2, alive, 510 days
4.4
DO45092
0 years, male, NA, stage:4, dead, 1200 days
4.4
DO23534
0 years, male, NA, stage:2, alive, 840 days
4.4
DO45123
0 years, female, NA, stage:2, dead, 570 days
4.3
DO50844
0 years, male, NA, stage:4, alive, 300 days
4.3
DO23549
0 years, male, NA, stage:3, alive, 990 days
4.3
DO227801
0 years, female, NA, stage:1, alive, 660 days
4.2
DO45131
0 years, male, NA, stage:4, dead, 360 days
4.2
DO45127
0 years, male, NA, stage:3, dead, 420 days
4.2
DO50818
0 years, male, NA, stage:2, alive, 510 days
4.1
DO48719
0 years, male, NA, stage:2, alive, 690 days
4.1
DO48672
0 years, male, NA, stage:2, alive, 450 days
4.1
DO23539
0 years, male, NA, stage:1, alive, 1110 days
4.1
DO50804
0 years, male, NA, stage:2, alive, 720 days
4.1
DO48693
0 years, male, NA, stage:2, alive, 900 days
4.0
DO45301
0 years, male, NA, stage:2, dead, 1440 days
4.0
DO48761
0 years, male, NA, stage:2, alive, 870 days
4.0
DO45305
0 years, male, NA, stage:4, alive, 300 days
4.0
DO23541
0 years, male, NA, stage:2, alive, 930 days
4.0
DO23514
0 years, male, NA, stage:2, alive, 1290 days
3.9
DO45267
0 years, male, NA, stage:3, dead, 570 days
3.9
DO45275
0 years, male, NA, stage:3, dead, 10 days
3.9
DO50829
0 years, male, NA, stage:3, alive, 570 days
3.9
DO50850
0 years, male, NA, stage:3, alive, 720 days
3.8
DO45095
0 years, male, NA, stage:2, alive, 1620 days
3.8
DO48747
0 years, male, NA, stage:3, alive, 540 days
3.8
DO48712
0 years, male, NA, stage:2, alive, 810 days
3.8
DO48742
0 years, male, NA, stage:2, alive, 600 days
3.8
DO45219
0 years, male, NA, stage:2, alive, 1080 days
3.8
DO45173
0 years, male, NA, stage:3, alive, 1170 days
3.7
DO48716
0 years, male, NA, stage:2, alive, 720 days
3.7
DO45115
0 years, male, NA, stage:2, alive, 840 days
3.7
DO50813
0 years, male, NA, stage:2, alive, 420 days
3.7
DO45245
0 years, female, NA, stage:2, dead, 240 days
3.7
DO45223
0 years, male, NA, stage:4, alive, 1020 days
3.7
DO48717
0 years, male, NA, stage:4, dead, 180 days
3.6
DO45167
0 years, male, NA, stage:2, dead, 1440 days
3.6
DO45297
0 years, female, NA, stage:4, dead, 1260 days
3.6
DO45261
0 years, male, NA, stage:3, alive, 990 days
3.5
DO227643
0 years, male, NA, stage:2, alive, 1260 days
3.5
DO50793
0 years, male, NA, stage:4, alive, 540 days
3.5
DO45109
0 years, male, NA, stage:2, alive, 1590 days
3.5
DO45145
0 years, male, NA, stage:3, dead, 60 days
3.5
DO45143
0 years, male, NA, stage:3, alive, 1290 days
3.5
DO45099
0 years, male, NA, stage:3, alive, 1590 days
3.5
DO48760
0 years, female, NA, stage:2, alive, 690 days
3.4
DO23528
0 years, female, NA, stage:2, alive, 1020 days
3.4
DO45111
0 years, male, NA, stage:2, alive, 1590 days
3.4
DO23536
0 years, male, NA, stage:2, alive, 930 days
3.4
DO50803
0 years, female, NA, stage:1, alive, 540 days
3.4
DO45193
0 years, female, NA, stage:4, dead, 120 days
3.4
DO23538
0 years, male, NA, stage:2, alive, 450 days
3.3
DO50805
0 years, male, NA, stage:2, alive, 690 days
3.3
DO45229
0 years, male, NA, stage:1, alive, 990 days
3.2
DO23513
0 years, male, NA, stage:3, alive, 1200 days
3.2
DO45235
0 years, female, NA, stage:1, alive, 900 days
3.2
DO23550
0 years, male, NA, stage:1, alive, 990 days
3.2
DO48725
0 years, male, NA, stage:1, alive, 780 days
3.2
DO23543
0 years, male, NA, stage:2, alive, 1020 days
3.2
DO48704
0 years, female, NA, stage:3, alive, 750 days
3.1
DO50817
0 years, male, NA, stage:2, alive, 390 days
3.1
DO50776
0 years, male, NA, stage:1, alive, 690 days
3.1
DO45269
0 years, male, NA, stage:3, alive, 750 days
3.1
DO23518
0 years, male, NA, stage:2, alive, 1320 days
3.0
DO45119
0 years, male, NA, stage:3, dead, 510 days
3.0
DO50789
0 years, female, NA, stage:2, alive, 570 days
2.9
DO45171
0 years, male, NA, stage:3, alive, 600 days
2.9
DO50774
0 years, female, NA, stage:2, alive, 720 days
2.9
DO50798
0 years, male, NA, stage:3, dead, 30 days
2.9
DO50832
0 years, male, NA, stage:3, alive, 90 days
2.8
DO45179
0 years, female, NA, stage:2, alive, 600 days
2.8
DO45197
0 years, male, NA, stage:2, alive, 1170 days
2.7
DO50840
0 years, male, NA, stage:2, alive, 330 days
2.7
DO50806
0 years, male, NA, stage:4, alive, 540 days
2.7
DO48727
0 years, female, NA, stage:2, dead, 390 days
2.6
DO23525
0 years, male, NA, stage:4, alive, 1050 days
2.6
DO48674
0 years, male, NA, stage:2, alive, 1260 days
2.6
DO45133
0 years, male, NA, stage:3, dead, 660 days
2.6
DO23533
0 years, male, NA, stage:2, alive, 900 days
2.5
DO50808
0 years, male, NA, stage:2, alive, 570 days
2.5
DO45195
0 years, male, NA, stage:1, alive, 390 days
2.5
DO50799
0 years, female, NA, stage:2, alive, 540 days
2.5
DO48679
0 years, male, NA, stage:2, alive, 1200 days
2.5
DO50859
0 years, male, NA, stage:2, alive, 180 days
2.4
DO50811
0 years, male, NA, stage:1, alive, 450 days
2.4
DO48759
0 years, male, NA, stage:3, alive, 720 days
2.4
DO45096
0 years, male, NA, stage:2, dead, 1290 days
2.4
DO23519
0 years, male, NA, stage:3, alive, 630 days
2.3
DO45169
0 years, male, NA, stage:3, alive, 1350 days
2.3
DO48751
0 years, male, NA, stage:2, dead, 480 days
2.2
DO50825
0 years, male, NA, stage:2, alive, 390 days
2.2
DO23544
0 years, male, NA, stage:2, alive, 960 days
2.2
DO23545
0 years, male, NA, stage:2, dead, 570 days
2.2
DO45129
0 years, male, NA, stage:3, alive, 1470 days
2.2
DO23529
0 years, male, NA, stage:4, alive, 930 days
2.1
DO45221
0 years, female, NA, stage:4, dead, 390 days
2.1
DO23508
0 years, female, NA, stage:2, alive, 390 days
2.1
DO48721
0 years, female, NA, stage:1, alive, 900 days
2.1
DO48757
0 years, female, NA, stage:3, alive, 480 days
2.1
DO48746
0 years, male, NA, stage:3, alive, 570 days
2.1
DO23509
0 years, male, NA, stage:3, dead, 780 days
2.0
DO45161
0 years, male, NA, stage:2, dead, 540 days
2.0
DO48677
0 years, male, NA, stage:3, alive, 1140 days
2.0
DO48715
0 years, female, NA, stage:2, dead, 690 days
2.0
DO48741
0 years, male, NA, stage:3, alive, 240 days
1.9
DO23517
0 years, male, NA, stage:2, alive, 1200 days
1.8
DO45091
0 years, male, NA, stage:2, dead, 1320 days
1.8
DO45285
0 years, male, NA, stage:3, alive, 480 days
1.7
DO48706
0 years, male, NA, stage:2, alive, 870 days
1.7
DO45237
0 years, male, NA, stage:2, alive, 900 days
1.7
DO45255
0 years, male, NA, stage:3, alive, 720 days
1.7
DO23552
0 years, female, NA, stage:1, alive, 810 days
1.6
DO45163
0 years, male, NA, stage:2, alive, 960 days
1.6
DO45211
0 years, male, NA, stage:3, alive, 240 days
1.5
DO50783
0 years, male, NA, stage:3, alive, 480 days
1.5
DO50839
0 years, female, NA, stage:3, alive, 330 days
1.5
DO45199
0 years, female, NA, stage:2, alive, 1350 days
1.4
DO50802
0 years, male, NA, stage:2, alive, 930 days
1.4
DO50857
0 years, male, NA, stage:2, alive, 210 days
1.4
DO45299
0 years, female, NA, stage:1, alive, 1440 days
1.3
DO50785
0 years, male, NA, stage:4, dead, 90 days
1.2
DO45117
0 years, female, NA, stage:2, dead, 1110 days
1.2
DO45093
0 years, male, NA, stage:2, dead, 720 days
1.2
DO45097
0 years, male, NA, stage:3, alive, 1620 days
1.1
DO45175
0 years, male, NA, stage:2, alive, 1140 days
1.0
DO50814
0 years, male, NA, stage:3, alive, 420 days
0.8
DO48723
0 years, male, NA, stage:1, alive, 600 days
0.6
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
743
Tumor
1.1
815
Tumor
0.9
213
Tumor
0.8
914
Normal
0.7
813
Tumor
0.7
447
Tumor
0.7
567
Tumor
0.7
976
Normal
0.7
192
Normal
0.7
536
Normal
0.7
368
Normal
0.6
124
Normal
0.6
396
Normal
0.6
283
Tumor
0.6
1026
Normal
0.6
661
Tumor
0.6
388
Normal
0.6
685
Tumor
0.6
217
Tumor
0.6
195
Tumor
0.6
392
Normal
0.5
515
Tumor
0.5
716
Normal
0.5
966
Normal
0.5
1022
Normal
0.5
915
Tumor
0.5
498
Normal
0.5
955
Tumor
0.5
1028
Normal
0.5
524
Normal
0.5
852
Normal
0.5
714
Normal
0.5
778
Normal
0.5
975
Tumor
0.5
628
Normal
0.4
814
Normal
0.4
271
Tumor
0.4
863
Tumor
0.4
268
Normal
0.4
394
Normal
0.4
218
Normal
0.4
416
Normal
0.4
686
Normal
0.4
262
Normal
0.4
224
Normal
0.4
627
Tumor
0.4
1042
Normal
0.4
954
Normal
0.4
352
Normal
0.4
952
Normal
0.4
1046
Normal
0.4
343
Tumor
0.4
231
Tumor
0.4
958
Normal
0.4
867
Tumor
0.4
297
Tumor
0.4
527
Tumor
0.4
956
Normal
0.4
545
Tumor
0.4
386
Normal
0.4
913
Tumor
0.4
721
Tumor
0.4
737
Tumor
0.4
696
Normal
0.4
526
Normal
0.4
344
Normal
0.4
131
Tumor
0.4
312
Normal
0.4
514
Normal
0.4
286
Normal
0.3
1021
Tumor
0.3
272
Normal
0.3
332
Normal
0.3
393
Tumor
0.3
376
Normal
0.3
1041
Tumor
0.3
944
Normal
0.3
478
Normal
0.3
354
Normal
0.3
528
Normal
0.3
212
Normal
0.3
636
Normal
0.3
785
Tumor
0.3
858
Normal
0.3
357
Tumor
0.3
284
Normal
0.3
211
Tumor
0.3
384
Normal
0.3
142
Normal
0.3
786
Normal
0.3
494
Normal
0.3
221
Tumor
0.3
415
Tumor
0.3
327
Tumor
0.3
445
Tumor
0.3
126
Normal
0.3
878
Normal
0.3
964
Normal
0.3
232
Normal
0.3
728
Normal
0.3
816
Normal
0.3
362
Normal
0.3
925
Tumor
0.3
421
Tumor
0.3
214
Normal
0.3
698
Normal
0.3
642
Normal
0.3
146
Normal
0.2
365
Tumor
0.2
672
Normal
0.2
926
Normal
0.2
434
Normal
0.2
862
Normal
0.2
823
Tumor
0.2
738
Normal
0.2
851
Tumor
0.2
516
Normal
0.2
968
Normal
0.2
358
Normal
0.2
412
Normal
0.2
818
Normal
0.2
188
Normal
0.2
817
Tumor
0.2
474
Normal
0.2
492
Normal
0.2
866
Normal
0.2
523
Tumor
0.2
162
Normal
0.2
298
Normal
0.2
278
Normal
0.2
258
Normal
0.2
461
Tumor
0.2
918
Normal
0.2
138
Normal
0.2
285
Tumor
0.2
722
Normal
0.2
574
Normal
0.2
391
Tumor
0.2
483
Tumor
0.2
172
Normal
0.2
1044
Normal
0.2
366
Normal
0.2
488
Normal
0.2
824
Normal
0.2
468
Normal
0.2
467
Tumor
0.2
924
Normal
0.2
742
Normal
0.2
431
Tumor
0.2
881
Tumor
0.2
938
Normal
0.2
186
Normal
0.2
518
Normal
0.2
448
Normal
0.2
114
Normal
0.2
136
Normal
0.2
484
Normal
0.2
546
Normal
0.2
472
Normal
0.2
912
Normal
0.2
196
Normal
0.2
861
Tumor
0.2
356
Normal
0.2
456
Normal
0.2
1032
Normal
0.2
671
Tumor
0.2
314
Normal
0.2
616
Normal
0.2
128
Normal
0.1
342
Normal
0.1
864
Normal
0.1
882
Normal
0.1
943
Tumor
0.1
493
Tumor
0.1
554
Normal
0.1
534
Normal
0.1
132
Normal
0.1
481
Tumor
0.1
857
Tumor
0.1
222
Normal
0.1
723
Tumor
0.1
471
Tumor
0.1
228
Normal
0.1
432
Normal
0.1
618
Normal
0.1
874
Normal
0.1
1027
Tumor
0.1
884
Normal
0.1
482
Normal
0.1
455
Tumor
0.1
148
Normal
0.1
538
Normal
0.1
466
Normal
0.1
744
Normal
0.1
387
Tumor
0.1
756
Normal
0.1
535
Tumor
0.1
111
Normal
0.1
413
Tumor
0.1
1025
Tumor
0.1
557
Tumor
0.1
364
Normal
0.1
564
Normal
0.1
462
Normal
0.1
572
Normal
0.0
777
Tumor
0.0
383
Tumor
0.0
385
Tumor
0.0
185
Tumor
0.0
922
Normal
0.0
568
Normal
0.0
331
Tumor
0.0
724
Normal
0.0
141
Tumor
0.0
916
Normal
0.0
191
Tumor
0.0
525
Tumor
0.0
868
Normal
0.0
464
Normal
0.0
444
Normal
0.0
446
Normal
0.0
865
Tumor
0.0
746
Normal
0.0
395
Tumor
0.0
558
Normal
0.0
367
Tumor
0.0
1045
Tumor
0.0
917
Tumor
0.0
223
Tumor
0.0
477
Tumor
0.0
361
Tumor
0.0
553
Tumor
-0.1
666
Normal
-0.1
341
Tumor
-0.1
422
Normal
-0.1
328
Normal
-0.1
953
Tumor
-0.1
923
Tumor
-0.1
436
Normal
-0.1
137
Tumor
-0.1
533
Tumor
-0.1
125
Tumor
-0.1
873
Tumor
-0.1
424
Normal
-0.1
713
Tumor
-0.1
1031
Tumor
-0.1
423
Tumor
-0.1
513
Tumor
-0.1
635
Tumor
-0.1
452
Normal
-0.1
664
Normal
-0.1
147
Tumor
-0.1
353
Tumor
-0.1
187
Tumor
-0.1
463
Tumor
-0.1
426
Normal
-0.1
261
Tumor
-0.1
277
Tumor
-0.2
963
Tumor
-0.2
497
Tumor
-0.2
145
Tumor
-0.2
615
Tumor
-0.2
425
Tumor
-0.2
755
Tumor
-0.2
428
Normal
-0.2
414
Normal
-0.2
563
Tumor
-0.2
662
Normal
-0.2
951
Tumor
-0.2
617
Tumor
-0.2
937
Tumor
-0.2
427
Tumor
-0.2
883
Tumor
-0.2
451
Tumor
-0.2
697
Tumor
-0.2
641
Tumor
-0.3
978
Normal
-0.3
351
Tumor
-0.3
491
Tumor
-0.3
161
Tumor
-0.3
517
Tumor
-0.3
443
Tumor
-0.3
648
Normal
-0.3
113
Tumor
-0.3
984
Normal
-0.4
171
Tumor
-0.4
433
Tumor
-0.4
311
Tumor
-0.4
363
Tumor
-0.4
375
Tumor
-0.4
1043
Tumor
-0.4
957
Tumor
-0.4
465
Tumor
-0.4
487
Tumor
-0.4
473
Tumor
-0.4
695
Tumor
-0.4
877
Tumor
-0.4
921
Tumor
-0.5
355
Tumor
-0.5
911
Tumor
-0.5
1014
Normal
-0.5
135
Tumor
-0.5
665
Tumor
-0.5
112
Tumor
-0.5
967
Tumor
-0.5
983
Tumor
-0.5
573
Tumor
-0.5
715
Tumor
-0.6
647
Tumor
-0.6
411
Tumor
-0.6
741
Tumor
-0.6
123
Tumor
-0.6
965
Tumor
-0.6
727
Tumor
-0.6
982
Normal
-0.6
1016
Normal
-0.6
313
Tumor
-0.7
257
Tumor
-0.7
227
Tumor
-0.7
981
Tumor
-0.7
537
Tumor
-0.7
745
Tumor
-0.7
267
Tumor
-0.7
1015
Tumor
-0.8
127
Tumor
-0.8
663
Tumor
-0.8
435
Tumor
-0.9
977
Tumor
-0.9
571
Tumor
-1.0
1013
Tumor
-1.5
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
