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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
VIPAS39 is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
6.9
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
21.5
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
19.8
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
17.5
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
16.9
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
16.3
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
15.9
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
15.7
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
15.3
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
14.8
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
13.7
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
13.4
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
12.9
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
12.6
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
12.5
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
12.4
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
12.3
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
12.3
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
12.2
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
12.2
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
12.0
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
12.0
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
11.5
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
11.5
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
11.4
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
11.3
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
11.3
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
11.2
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
11.1
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
10.9
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
10.9
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
10.9
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
10.8
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
10.8
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
10.6
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
10.6
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
10.6
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
10.6
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
10.5
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
10.5
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
10.5
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
10.5
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
10.4
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
10.4
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
10.3
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
10.3
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
10.3
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
10.3
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
10.3
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
10.2
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
10.1
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
10.1
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
10.1
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
10.0
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
10.0
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
9.8
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
9.8
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
9.7
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
9.7
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
9.6
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
9.6
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
9.5
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
9.5
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
9.5
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
9.5
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
9.4
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
9.4
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
9.4
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
9.3
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
9.3
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
9.2
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
9.1
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
9.1
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
9.1
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
8.9
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
8.9
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
8.9
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
8.9
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
8.9
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
8.8
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
8.8
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
8.7
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
8.7
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
8.7
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
8.6
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
8.6
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
8.5
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
8.4
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
8.4
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
8.4
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
8.4
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
8.3
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
8.3
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
8.3
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
8.3
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
8.3
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
8.3
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
8.3
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
8.3
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
8.2
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
8.2
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
8.2
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
8.2
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
8.1
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
8.1
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
8.1
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
8.1
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
8.1
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
8.1
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
8.0
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
8.0
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
8.0
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
8.0
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
8.0
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
8.0
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
7.9
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
7.9
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
7.9
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
7.9
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
7.9
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
7.9
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
7.9
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
7.8
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
7.8
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
7.8
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
7.8
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
7.8
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
7.7
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
7.7
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
7.7
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
7.7
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
7.7
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
7.7
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
7.7
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
7.6
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
7.6
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
7.6
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
7.6
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
7.6
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
7.5
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
7.5
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
7.4
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
7.4
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
7.4
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
7.3
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
7.3
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
7.3
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
7.3
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
7.2
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
7.2
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
7.2
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
7.2
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
7.2
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
7.2
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
7.2
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
7.2
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
7.1
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
7.1
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
7.1
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
7.1
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
7.1
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
7.1
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
7.1
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
7.0
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
7.0
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
7.0
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
7.0
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
7.0
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
7.0
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
6.9
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
6.9
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
6.9
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
6.8
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
6.8
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
6.8
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
6.8
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
6.7
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
6.7
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
6.6
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
6.6
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
6.5
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
6.5
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
6.5
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
6.5
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
6.4
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
6.4
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
6.4
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
6.4
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
6.4
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
6.3
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
6.3
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
6.3
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
6.3
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
6.3
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
6.3
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
6.3
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
6.3
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
6.3
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
6.2
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
6.2
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
6.2
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
6.2
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
6.2
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
6.1
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
6.1
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
6.1
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
6.0
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
6.0
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
6.0
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
6.0
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
6.0
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
6.0
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
6.0
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
6.0
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
6.0
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
6.0
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
5.9
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
5.9
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
5.9
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
5.9
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
5.9
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
5.9
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
5.8
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
5.8
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
5.8
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
5.8
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
5.8
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
5.8
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
5.8
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
5.7
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
5.7
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
5.7
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
5.7
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
5.7
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
5.7
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
5.7
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
5.6
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
5.6
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
5.6
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
5.6
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
5.5
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
5.5
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
5.5
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
5.5
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
5.5
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
5.4
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
5.4
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
5.4
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
5.3
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
5.3
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
5.3
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
5.3
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
5.2
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
5.2
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
5.2
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
5.2
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
5.2
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
5.2
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
5.1
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
5.1
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
5.1
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
5.0
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
5.0
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
5.0
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
5.0
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
5.0
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
5.0
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
4.9
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
4.9
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
4.9
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
4.8
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
4.8
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
4.8
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
4.8
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
4.7
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
4.7
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
4.7
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
4.7
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
4.7
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
4.7
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
4.7
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
4.6
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
4.6
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
4.6
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
4.5
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
4.5
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
4.5
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
4.5
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
4.5
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
4.4
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
4.4
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
4.4
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
4.4
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
4.4
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
4.4
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
4.4
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
4.4
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
4.3
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
4.3
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
4.3
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
4.3
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
4.2
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
4.2
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
4.2
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
4.1
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
4.1
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
4.0
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
4.0
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
3.9
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
3.9
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
3.9
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
3.9
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
3.8
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
3.8
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
3.8
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
3.7
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
3.7
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
3.7
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
3.7
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
3.7
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
3.7
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
3.6
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
3.6
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
3.6
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
3.6
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
3.5
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
3.5
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
3.5
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
3.5
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
3.4
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
3.4
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
3.3
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
3.3
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
3.3
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
3.2
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
3.1
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
3.1
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
3.0
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
3.0
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
2.9
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
2.8
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
2.8
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
2.8
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
2.7
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
2.7
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
2.6
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
2.5
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
2.5
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
2.5
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
2.4
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
2.4
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
2.3
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
2.2
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
2.2
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
2.0
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
2.0
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
2.0
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
1.8
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
1.5
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
1.2
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
1.0
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
0.7
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
Survival analysis data not available.
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
1027
Tumor
0.8
863
Tumor
0.7
257
Tumor
0.6
981
Tumor
0.6
777
Tumor
0.5
473
Tumor
0.5
527
Tumor
0.5
737
Tumor
0.5
755
Tumor
0.5
955
Tumor
0.5
445
Tumor
0.5
431
Tumor
0.5
553
Tumor
0.5
741
Tumor
0.5
975
Tumor
0.5
911
Tumor
0.5
515
Tumor
0.5
695
Tumor
0.5
313
Tumor
0.4
411
Tumor
0.4
363
Tumor
0.4
785
Tumor
0.4
685
Tumor
0.4
261
Tumor
0.4
627
Tumor
0.4
137
Tumor
0.4
455
Tumor
0.4
518
Normal
0.4
487
Tumor
0.4
665
Tumor
0.4
271
Tumor
0.4
365
Tumor
0.4
231
Tumor
0.4
357
Tumor
0.3
953
Tumor
0.3
641
Tumor
0.3
861
Tumor
0.3
514
Normal
0.3
526
Normal
0.3
635
Tumor
0.3
958
Normal
0.3
873
Tumor
0.3
423
Tumor
0.3
815
Tumor
0.3
1045
Tumor
0.3
745
Tumor
0.3
471
Tumor
0.3
867
Tumor
0.3
952
Normal
0.3
484
Normal
0.3
135
Tumor
0.3
513
Tumor
0.3
647
Tumor
0.3
727
Tumor
0.2
925
Tumor
0.2
615
Tumor
0.2
461
Tumor
0.2
756
Normal
0.2
954
Normal
0.2
516
Normal
0.2
862
Normal
0.2
221
Tumor
0.2
387
Tumor
0.2
361
Tumor
0.2
744
Normal
0.2
432
Normal
0.2
362
Normal
0.2
938
Normal
0.2
967
Tumor
0.2
957
Tumor
0.2
648
Normal
0.2
728
Normal
0.2
965
Tumor
0.2
738
Normal
0.2
1046
Normal
0.2
881
Tumor
0.2
944
Normal
0.2
964
Normal
0.2
868
Normal
0.2
1022
Normal
0.2
924
Normal
0.2
813
Tumor
0.2
723
Tumor
0.2
533
Tumor
0.2
1015
Tumor
0.2
696
Normal
0.2
312
Normal
0.2
211
Tumor
0.2
713
Tumor
0.2
258
Normal
0.2
212
Normal
0.2
918
Normal
0.2
185
Tumor
0.2
272
Normal
0.2
1026
Normal
0.2
127
Tumor
0.2
422
Normal
0.2
132
Normal
0.2
427
Tumor
0.2
534
Normal
0.2
128
Normal
0.2
524
Normal
0.2
852
Normal
0.2
268
Normal
0.2
297
Tumor
0.2
428
Normal
0.2
716
Normal
0.2
311
Tumor
0.2
414
Normal
0.2
278
Normal
0.1
434
Normal
0.1
262
Normal
0.1
138
Normal
0.1
963
Tumor
0.1
968
Normal
0.1
446
Normal
0.1
618
Normal
0.1
131
Tumor
0.1
715
Tumor
0.1
1043
Tumor
0.1
926
Normal
0.1
284
Normal
0.1
124
Normal
0.1
452
Normal
0.1
642
Normal
0.1
714
Normal
0.1
1042
Normal
0.1
376
Normal
0.1
433
Tumor
0.1
228
Normal
0.1
1028
Normal
0.1
468
Normal
0.1
864
Normal
0.1
435
Tumor
0.1
366
Normal
0.1
956
Normal
0.1
488
Normal
0.1
866
Normal
0.1
922
Normal
0.1
943
Tumor
0.1
444
Normal
0.1
492
Normal
0.1
125
Tumor
0.1
283
Tumor
0.1
554
Normal
0.1
354
Normal
0.1
356
Normal
0.1
914
Normal
0.1
436
Normal
0.1
535
Tumor
0.1
814
Normal
0.1
1021
Tumor
0.1
664
Normal
0.1
415
Tumor
0.1
136
Normal
0.1
616
Normal
0.1
412
Normal
0.1
416
Normal
0.1
786
Normal
0.1
494
Normal
0.1
232
Normal
0.1
966
Normal
0.1
672
Normal
0.1
662
Normal
0.1
142
Normal
0.1
671
Tumor
0.1
111
Normal
0.1
114
Normal
0.1
332
Normal
0.1
698
Normal
0.1
383
Tumor
0.1
424
Normal
0.1
421
Tumor
0.1
817
Tumor
0.1
298
Normal
0.1
368
Normal
0.1
1032
Normal
0.1
721
Tumor
0.1
358
Normal
0.1
353
Tumor
0.1
528
Normal
0.1
563
Tumor
0.1
466
Normal
0.1
112
Tumor
0.1
921
Tumor
0.1
978
Normal
0.1
493
Tumor
0.1
448
Normal
0.1
364
Normal
0.1
148
Normal
0.1
666
Normal
0.1
636
Normal
0.1
663
Tumor
0.1
426
Normal
0.1
778
Normal
0.1
883
Tumor
0.1
743
Tumor
0.1
628
Normal
0.1
617
Tumor
0.1
191
Tumor
0.1
126
Normal
0.1
218
Normal
0.1
474
Normal
0.0
823
Tumor
0.0
277
Tumor
0.0
498
Normal
0.0
443
Tumor
0.0
482
Normal
0.0
213
Tumor
0.0
824
Normal
0.0
976
Normal
0.0
546
Normal
0.0
464
Normal
0.0
523
Tumor
0.0
536
Normal
0.0
884
Normal
0.0
882
Normal
0.0
916
Normal
0.0
564
Normal
0.0
857
Tumor
0.0
286
Normal
0.0
478
Normal
0.0
572
Normal
0.0
558
Normal
0.0
451
Tumor
0.0
386
Normal
0.0
344
Normal
0.0
227
Tumor
0.0
878
Normal
0.0
314
Normal
0.0
394
Normal
0.0
724
Normal
0.0
915
Tumor
0.0
951
Tumor
0.0
858
Normal
0.0
351
Tumor
0.0
162
Normal
0.0
384
Normal
0.0
186
Normal
0.0
472
Normal
0.0
425
Tumor
0.0
742
Normal
0.0
877
Tumor
0.0
456
Normal
0.0
214
Normal
0.0
217
Tumor
0.0
352
Normal
0.0
224
Normal
0.0
818
Normal
0.0
977
Tumor
0.0
1044
Normal
0.0
722
Normal
0.0
574
Normal
0.0
172
Normal
0.0
497
Tumor
0.0
222
Normal
0.0
686
Normal
0.0
481
Tumor
0.0
396
Normal
0.0
141
Tumor
0.0
146
Normal
0.0
367
Tumor
0.0
391
Tumor
0.0
816
Normal
0.0
187
Tumor
0.0
937
Tumor
0.0
393
Tumor
0.0
746
Normal
0.0
517
Tumor
0.0
196
Normal
0.0
388
Normal
-0.1
375
Tumor
-0.1
557
Tumor
-0.1
874
Normal
-0.1
342
Normal
-0.1
912
Normal
-0.1
267
Tumor
-0.1
851
Tumor
-0.1
385
Tumor
-0.1
982
Normal
-0.1
462
Normal
-0.1
328
Normal
-0.1
697
Tumor
-0.1
477
Tumor
-0.1
171
Tumor
-0.1
341
Tumor
-0.1
195
Tumor
-0.1
865
Tumor
-0.1
447
Tumor
-0.1
463
Tumor
-0.1
525
Tumor
-0.1
917
Tumor
-0.1
467
Tumor
-0.1
392
Normal
-0.1
355
Tumor
-0.1
465
Tumor
-0.1
567
Tumor
-0.1
192
Normal
-0.1
984
Normal
-0.1
491
Tumor
-0.1
538
Normal
-0.1
1016
Normal
-0.1
113
Tumor
-0.1
145
Tumor
-0.2
913
Tumor
-0.2
545
Tumor
-0.2
573
Tumor
-0.2
1014
Normal
-0.2
147
Tumor
-0.2
537
Tumor
-0.2
123
Tumor
-0.2
1031
Tumor
-0.2
327
Tumor
-0.2
161
Tumor
-0.2
413
Tumor
-0.2
188
Normal
-0.2
568
Normal
-0.2
331
Tumor
-0.2
483
Tumor
-0.2
661
Tumor
-0.2
1013
Tumor
-0.3
571
Tumor
-0.3
223
Tumor
-0.3
923
Tumor
-0.3
343
Tumor
-0.3
395
Tumor
-0.4
1025
Tumor
-0.5
285
Tumor
-0.5
1041
Tumor
-0.6
983
Tumor
-0.6
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
