We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
NEK7 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
10.9
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
63.2
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
46.9
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
40.6
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
38.3
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
38.0
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
37.2
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
35.3
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
33.0
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
30.1
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
29.8
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
29.7
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
28.3
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
28.2
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
27.6
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
25.7
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
25.6
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
25.5
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
25.1
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
24.8
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
24.8
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
24.1
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
23.5
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
23.2
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
22.8
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
22.7
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
22.2
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
22.2
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
22.0
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
21.8
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
21.8
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
21.7
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
21.7
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
21.7
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
21.1
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
21.0
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
20.8
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
20.7
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
20.6
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
20.5
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
19.5
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
19.3
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
19.2
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
19.1
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
19.1
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
19.0
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
18.8
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
18.6
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
18.2
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
18.1
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
17.9
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
17.8
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
17.8
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
17.7
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
17.6
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
17.3
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
17.1
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
16.9
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
16.9
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
16.7
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
16.7
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
16.5
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
16.4
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
16.4
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
16.4
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
16.3
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
16.2
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
16.2
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
16.1
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
16.0
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
15.6
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
15.6
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
15.5
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
15.5
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
15.5
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
15.5
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
15.5
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
15.2
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
14.9
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
14.9
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
14.7
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
14.7
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
14.4
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
14.3
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
14.3
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
14.3
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
14.2
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
14.2
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
14.2
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
14.2
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
14.1
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
14.1
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
13.9
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
13.8
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
13.7
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
13.7
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
13.6
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
13.6
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
13.5
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
13.5
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
13.4
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
13.4
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
13.3
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
13.3
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
13.3
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
13.2
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
13.2
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
13.2
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
13.1
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
13.1
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
13.1
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
13.1
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
13.0
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
12.9
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
12.8
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
12.8
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
12.8
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
12.7
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
12.4
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
12.4
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
12.3
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
12.1
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
12.0
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
12.0
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
11.9
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
11.8
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
11.6
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
11.6
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
11.5
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
11.5
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
11.5
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
11.5
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
11.5
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
11.4
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
11.4
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
11.4
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
11.3
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
11.3
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
11.3
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
11.1
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
11.0
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
10.9
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
10.9
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
10.9
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
10.8
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
10.6
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
10.6
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
10.5
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
10.5
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
10.5
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
10.5
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
10.5
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
10.4
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
10.4
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
10.4
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
10.4
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
10.4
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
10.2
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
10.2
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
10.1
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
10.0
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
10.0
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
10.0
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
10.0
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
10.0
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
9.9
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
9.9
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
9.9
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
9.8
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
9.8
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
9.8
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
9.8
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
9.7
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
9.7
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
9.7
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
9.6
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
9.6
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
9.6
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
9.5
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
9.5
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
9.5
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
9.5
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
9.4
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
9.4
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
9.3
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
9.3
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
9.3
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
9.2
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
9.2
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
9.1
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
9.1
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
9.1
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
9.0
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
9.0
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
8.9
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
8.8
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
8.8
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
8.8
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
8.8
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
8.7
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
8.7
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
8.7
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
8.6
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
8.6
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
8.5
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
8.5
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
8.5
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
8.4
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
8.4
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
8.3
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
8.3
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
8.3
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
8.3
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
8.3
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
8.3
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
8.2
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
8.2
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
8.0
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
8.0
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
8.0
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
7.9
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
7.7
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
7.7
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
7.7
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
7.7
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
7.6
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
7.6
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
7.5
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
7.5
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
7.4
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
7.4
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
7.3
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
7.2
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
7.2
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
7.2
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
7.2
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
7.1
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
7.1
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
7.1
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
7.1
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
7.1
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
7.1
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
7.1
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
7.0
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
7.0
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
7.0
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
6.9
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
6.9
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
6.8
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
6.8
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
6.7
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
6.7
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
6.6
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
6.6
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
6.6
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
6.5
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
6.3
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
6.3
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
6.2
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
6.2
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
6.2
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
6.1
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
6.1
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
6.1
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
6.1
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
6.0
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
5.9
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
5.9
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
5.8
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
5.7
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
5.6
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
5.6
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
5.6
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
5.6
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
5.5
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
5.5
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
5.5
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
5.4
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
5.3
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
5.3
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
5.2
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
5.1
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
5.1
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
5.1
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
5.0
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
5.0
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
5.0
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
4.8
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
4.8
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
4.8
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
4.8
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
4.8
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
4.8
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
4.7
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
4.6
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
4.6
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
4.6
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
4.5
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
4.5
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
4.4
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
4.4
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
4.4
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
4.4
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
4.1
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
4.1
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
4.1
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
4.1
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
4.1
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
4.0
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
4.0
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
4.0
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
4.0
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
4.0
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
3.9
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
3.9
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
3.8
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
3.8
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
3.8
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
3.8
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
3.8
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
3.7
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
3.6
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
3.6
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
3.5
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
3.4
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
3.4
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
3.4
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
3.3
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
3.3
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
3.3
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
3.2
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
2.9
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
2.9
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
2.9
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
2.8
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
2.8
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
2.8
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
2.8
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
2.6
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
2.5
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
2.5
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
2.5
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
2.4
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
2.3
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
1.9
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
1.9
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
1.9
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
1.9
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
1.8
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
1.8
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
1.8
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
1.6
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
1.5
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
1.5
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
1.4
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
1.3
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
1.1
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
1.0
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
0.9
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
0.8
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
0.6
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
0.3
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
NEK7 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
15.3
Number of samples
231
Samples
Sample
Description
TPM
DO45263
0 years, male, NA, stage:3, dead, 270 days
56.2
DO48746
0 years, male, NA, stage:3, alive, 570 days
44.4
DO45251
0 years, female, NA, stage:2, alive, 900 days
42.6
DO45279
0 years, male, NA, stage:3, alive, 1290 days
38.1
DO45277
0 years, male, NA, stage:3, alive, 600 days
37.3
DO45205
0 years, female, NA, stage:2, dead, 90 days
32.3
DO45257
0 years, male, NA, stage:3, alive, 810 days
31.1
DO48704
0 years, female, NA, stage:3, alive, 750 days
31.0
DO45159
0 years, male, NA, stage:3, alive, 1470 days
30.8
DO45301
0 years, male, NA, stage:2, dead, 1440 days
30.4
DO45193
0 years, female, NA, stage:4, dead, 120 days
29.5
DO45299
0 years, female, NA, stage:1, alive, 1440 days
28.7
DO45185
0 years, male, NA, stage:2, alive, 600 days
28.7
DO45197
0 years, male, NA, stage:2, alive, 1170 days
28.3
DO45207
0 years, male, NA, stage:1, alive, 1050 days
28.0
DO45253
0 years, male, NA, stage:2, alive, 870 days
27.7
DO45119
0 years, male, NA, stage:3, dead, 510 days
27.4
DO45137
0 years, male, NA, stage:1, alive, 1320 days
26.2
DO45213
0 years, male, NA, stage:1, alive, 1200 days
26.1
DO45203
0 years, female, NA, stage:2, alive, 1170 days
26.0
DO45247
0 years, female, NA, stage:2, alive, 210 days
25.9
DO45231
0 years, male, NA, stage:2, alive, 930 days
25.5
DO45237
0 years, male, NA, stage:2, alive, 900 days
25.4
DO45163
0 years, male, NA, stage:2, alive, 960 days
25.0
DO23513
0 years, male, NA, stage:3, alive, 1200 days
24.9
DO45275
0 years, male, NA, stage:3, dead, 10 days
24.8
DO48717
0 years, male, NA, stage:4, dead, 180 days
24.2
DO50844
0 years, male, NA, stage:4, alive, 300 days
24.2
DO45127
0 years, male, NA, stage:3, dead, 420 days
24.1
DO45121
0 years, male, NA, stage:3, alive, 1530 days
23.7
DO45223
0 years, male, NA, stage:4, alive, 1020 days
23.7
DO23524
0 years, female, NA, stage:2, alive, 1050 days
23.4
DO45131
0 years, male, NA, stage:4, dead, 360 days
22.7
DO45092
0 years, male, NA, stage:4, dead, 1200 days
22.5
DO45283
0 years, male, NA, stage:3, alive, 510 days
22.4
DO45103
0 years, male, NA, stage:3, alive, 450 days
22.2
DO45155
0 years, male, NA, stage:2, alive, 2160 days
21.9
DO45177
0 years, female, NA, stage:3, alive, 1260 days
21.2
DO48701
0 years, male, NA, stage:2, alive, 780 days
21.1
DO45139
0 years, male, NA, stage:3, alive, 1320 days
21.1
DO45153
0 years, female, NA, stage:2, alive, 1380 days
21.0
DO45243
0 years, female, NA, stage:3, alive, 930 days
21.0
DO45165
0 years, male, NA, stage:2, alive, 690 days
21.0
DO23528
0 years, female, NA, stage:2, alive, 1020 days
20.8
DO48700
0 years, female, NA, stage:2, alive, 810 days
20.7
DO45287
0 years, male, NA, stage:1, alive, 390 days
20.6
DO23542
0 years, male, NA, stage:3, alive, 960 days
20.1
DO23510
0 years, female, NA, stage:2, alive, 870 days
20.1
DO45189
0 years, female, NA, stage:2, alive, 1200 days
20.0
DO50793
0 years, male, NA, stage:4, alive, 540 days
20.0
DO45211
0 years, male, NA, stage:3, alive, 240 days
19.9
DO45117
0 years, female, NA, stage:2, dead, 1110 days
19.8
DO48677
0 years, male, NA, stage:3, alive, 1140 days
19.7
DO23514
0 years, male, NA, stage:2, alive, 1290 days
19.5
DO50799
0 years, female, NA, stage:2, alive, 540 days
19.3
DO45171
0 years, male, NA, stage:3, alive, 600 days
19.3
DO45273
0 years, male, NA, stage:2, alive, 480 days
19.2
DO50822
0 years, male, NA, stage:2, alive, 510 days
19.1
DO45187
0 years, female, NA, stage:1, alive, 1260 days
19.0
DO45157
0 years, male, NA, stage:2, alive, 1980 days
18.9
DO45239
0 years, male, NA, stage:2, alive, 870 days
18.9
DO45113
0 years, male, NA, stage:3, alive, 1560 days
18.7
DO48672
0 years, male, NA, stage:2, alive, 450 days
18.7
DO45227
0 years, female, NA, stage:2, alive, 1020 days
18.6
DO45141
0 years, male, NA, stage:2, alive, 1320 days
18.5
DO23533
0 years, male, NA, stage:2, alive, 900 days
18.5
DO45225
0 years, male, NA, stage:1, alive, 1050 days
18.5
DO48757
0 years, female, NA, stage:3, alive, 480 days
18.3
DO50820
0 years, female, NA, stage:3, alive, 510 days
18.2
DO45267
0 years, male, NA, stage:3, dead, 570 days
18.1
DO45235
0 years, female, NA, stage:1, alive, 900 days
18.1
DO48706
0 years, male, NA, stage:2, alive, 870 days
18.0
DO50857
0 years, male, NA, stage:2, alive, 210 days
18.0
DO48720
0 years, female, NA, stage:2, alive, 570 days
17.9
DO50850
0 years, male, NA, stage:3, alive, 720 days
17.8
DO50800
0 years, male, NA, stage:2, alive, 510 days
17.8
DO45297
0 years, female, NA, stage:4, dead, 1260 days
17.5
DO23516
0 years, male, NA, stage:3, dead, 20 days
17.4
DO23530
0 years, male, NA, stage:4, dead, 180 days
16.6
DO45097
0 years, male, NA, stage:3, alive, 1620 days
16.5
DO23529
0 years, male, NA, stage:4, alive, 930 days
16.5
DO48733
0 years, male, NA, stage:2, alive, 600 days
16.5
DO23509
0 years, male, NA, stage:3, dead, 780 days
16.3
DO23535
0 years, male, NA, stage:1, alive, 960 days
16.2
DO23518
0 years, male, NA, stage:2, alive, 1320 days
16.1
DO23523
0 years, male, NA, stage:3, alive, 1080 days
16.0
DO48712
0 years, male, NA, stage:2, alive, 810 days
16.0
DO48736
0 years, female, NA, stage:1, alive, 600 days
15.8
DO45123
0 years, female, NA, stage:2, dead, 570 days
15.7
DO50798
0 years, male, NA, stage:3, dead, 30 days
15.7
DO23526
0 years, male, NA, stage:3, alive, 1050 days
15.6
DO50811
0 years, male, NA, stage:1, alive, 450 days
15.6
DO45183
0 years, female, NA, stage:2, dead, 570 days
15.6
DO50803
0 years, female, NA, stage:1, alive, 540 days
15.5
DO23527
0 years, male, NA, stage:1, alive, 1050 days
15.5
DO50840
0 years, male, NA, stage:2, alive, 330 days
15.5
DO23548
0 years, female, NA, stage:1, alive, 840 days
15.4
DO50783
0 years, male, NA, stage:3, alive, 480 days
15.3
DO23536
0 years, male, NA, stage:2, alive, 930 days
15.3
DO48695
0 years, male, NA, stage:2, alive, 720 days
15.3
DO50859
0 years, male, NA, stage:2, alive, 180 days
15.3
DO45281
0 years, male, NA, stage:4, alive, 750 days
15.2
DO45219
0 years, male, NA, stage:2, alive, 1080 days
15.2
DO45169
0 years, male, NA, stage:3, alive, 1350 days
15.2
DO45233
0 years, male, NA, stage:3, alive, 900 days
15.1
DO45245
0 years, female, NA, stage:2, dead, 240 days
15.0
DO48743
0 years, female, NA, stage:2, alive, 570 days
15.0
DO23521
0 years, male, NA, stage:3, alive, 1110 days
14.9
DO45129
0 years, male, NA, stage:3, alive, 1470 days
14.9
DO45096
0 years, male, NA, stage:2, dead, 1290 days
14.7
DO45135
0 years, male, NA, stage:1, alive, 1410 days
14.7
DO23538
0 years, male, NA, stage:2, alive, 450 days
14.6
DO45091
0 years, male, NA, stage:2, dead, 1320 days
14.5
DO45173
0 years, male, NA, stage:3, alive, 1170 days
14.4
DO23541
0 years, male, NA, stage:2, alive, 930 days
14.4
DO23546
0 years, male, NA, stage:2, alive, 1050 days
14.4
DO48728
0 years, female, NA, stage:2, alive, 150 days
14.4
DO227801
0 years, female, NA, stage:1, alive, 660 days
14.2
DO50791
0 years, female, NA, stage:1, dead, 480 days
14.1
DO50778
0 years, male, NA, stage:4, alive, 630 days
13.7
DO45303
0 years, female, NA, stage:3, alive, 990 days
13.7
DO23549
0 years, male, NA, stage:3, alive, 990 days
13.6
DO48721
0 years, female, NA, stage:1, alive, 900 days
13.6
DO45095
0 years, male, NA, stage:2, alive, 1620 days
13.5
DO50802
0 years, male, NA, stage:2, alive, 930 days
13.5
DO48751
0 years, male, NA, stage:2, dead, 480 days
13.2
DO45229
0 years, male, NA, stage:1, alive, 990 days
13.1
DO45249
0 years, male, NA, stage:1, alive, 630 days
13.0
DO45261
0 years, male, NA, stage:3, alive, 990 days
13.0
DO45133
0 years, male, NA, stage:3, dead, 660 days
13.0
DO45111
0 years, male, NA, stage:2, alive, 1590 days
12.9
DO45201
0 years, male, NA, stage:1, alive, 900 days
12.9
DO23540
0 years, male, NA, stage:1, alive, 750 days
12.8
DO45221
0 years, female, NA, stage:4, dead, 390 days
12.8
DO45179
0 years, female, NA, stage:2, alive, 600 days
12.8
DO48732
0 years, male, NA, stage:3, alive, 630 days
12.7
DO45161
0 years, male, NA, stage:2, dead, 540 days
12.6
DO45259
0 years, male, NA, stage:3, alive, 330 days
12.5
DO23515
0 years, male, NA, stage:2, alive, 1230 days
12.4
DO48725
0 years, male, NA, stage:1, alive, 780 days
12.3
DO50774
0 years, female, NA, stage:2, alive, 720 days
12.2
DO45215
0 years, male, NA, stage:2, alive, 1170 days
12.0
DO45305
0 years, male, NA, stage:4, alive, 300 days
12.0
DO50817
0 years, male, NA, stage:2, alive, 390 days
11.9
DO50829
0 years, male, NA, stage:3, alive, 570 days
11.9
DO23547
0 years, male, NA, stage:1, alive, 1020 days
11.9
DO48681
0 years, male, NA, stage:2, alive, 900 days
11.9
DO50776
0 years, male, NA, stage:1, alive, 690 days
11.8
DO23537
0 years, male, NA, stage:2, dead, 900 days
11.7
DO50825
0 years, male, NA, stage:2, alive, 390 days
11.7
DO23543
0 years, male, NA, stage:2, alive, 1020 days
11.6
DO45094
0 years, male, NA, stage:3, alive, 1650 days
11.5
DO50804
0 years, male, NA, stage:2, alive, 720 days
11.5
DO48741
0 years, male, NA, stage:3, alive, 240 days
11.5
DO48716
0 years, male, NA, stage:2, alive, 720 days
11.5
DO23531
0 years, female, NA, stage:3, alive, 900 days
11.5
DO45143
0 years, male, NA, stage:3, alive, 1290 days
11.4
DO45099
0 years, male, NA, stage:3, alive, 1590 days
11.3
DO45209
0 years, male, NA, stage:4, alive, 1350 days
11.3
DO48723
0 years, male, NA, stage:1, alive, 600 days
11.2
DO45115
0 years, male, NA, stage:2, alive, 840 days
10.9
DO48679
0 years, male, NA, stage:2, alive, 1200 days
10.9
DO45191
0 years, female, NA, stage:2, alive, 1200 days
10.8
DO45145
0 years, male, NA, stage:3, dead, 60 days
10.7
DO48682
0 years, female, NA, stage:3, dead, 120 days
10.7
DO48719
0 years, male, NA, stage:2, alive, 690 days
10.7
DO48761
0 years, male, NA, stage:2, alive, 870 days
10.5
DO50789
0 years, female, NA, stage:2, alive, 570 days
10.4
DO23552
0 years, female, NA, stage:1, alive, 810 days
10.3
DO50809
0 years, male, NA, stage:3, dead, 720 days
10.3
DO23512
0 years, male, NA, stage:1, alive, 1260 days
10.3
DO48737
0 years, male, NA, stage:1, alive, 720 days
10.2
DO45125
0 years, male, NA, stage:3, alive, 1680 days
10.2
DO50787
0 years, male, NA, stage:3, alive, 480 days
10.2
DO45199
0 years, female, NA, stage:2, alive, 1350 days
10.1
DO50807
0 years, male, NA, stage:1, alive, 540 days
9.9
DO23545
0 years, male, NA, stage:2, dead, 570 days
9.8
DO45269
0 years, male, NA, stage:3, alive, 750 days
9.7
DO45307
0 years, female, NA, stage:4, dead, 240 days
9.7
DO50819
0 years, female, NA, stage:2, alive, 510 days
9.7
DO45265
0 years, male, NA, stage:3, alive, 1020 days
9.7
DO48697
0 years, female, NA, stage:2, dead, 810 days
9.6
DO48730
0 years, female, NA, stage:2, alive, 630 days
9.5
DO45289
0 years, female, NA, stage:3, alive, 360 days
9.3
DO45217
0 years, female, NA, stage:3, dead, 270 days
9.3
DO50855
0 years, male, NA, stage:2, alive, 570 days
8.7
DO48760
0 years, female, NA, stage:2, alive, 690 days
8.4
DO45181
0 years, female, NA, stage:2, alive, 1200 days
8.4
DO48747
0 years, male, NA, stage:3, alive, 540 days
8.3
DO50805
0 years, male, NA, stage:2, alive, 690 days
8.3
DO50845
0 years, male, NA, stage:3, alive, 210 days
8.0
DO50816
0 years, male, NA, stage:2, alive, 390 days
7.9
DO50808
0 years, male, NA, stage:2, alive, 570 days
7.8
DO50832
0 years, male, NA, stage:3, alive, 90 days
7.7
DO23519
0 years, male, NA, stage:3, alive, 630 days
7.7
DO45107
0 years, female, NA, stage:2, alive, 1710 days
7.7
DO23508
0 years, female, NA, stage:2, alive, 390 days
7.6
DO50806
0 years, male, NA, stage:4, alive, 540 days
7.6
DO23525
0 years, male, NA, stage:4, alive, 1050 days
7.5
DO48742
0 years, male, NA, stage:2, alive, 600 days
7.5
DO23550
0 years, male, NA, stage:1, alive, 990 days
7.5
DO45167
0 years, male, NA, stage:2, dead, 1440 days
7.5
DO48693
0 years, male, NA, stage:2, alive, 900 days
7.5
DO227643
0 years, male, NA, stage:2, alive, 1260 days
7.4
DO23539
0 years, male, NA, stage:1, alive, 1110 days
7.4
DO45175
0 years, male, NA, stage:2, alive, 1140 days
7.4
DO23517
0 years, male, NA, stage:2, alive, 1200 days
7.3
DO45093
0 years, male, NA, stage:2, dead, 720 days
7.3
DO45241
0 years, male, NA, stage:1, alive, 1080 days
7.3
DO45255
0 years, male, NA, stage:3, alive, 720 days
7.2
DO50815
0 years, male, NA, stage:3, alive, 150 days
7.2
DO50785
0 years, male, NA, stage:4, dead, 90 days
7.2
DO23551
0 years, male, NA, stage:3, dead, 150 days
7.1
DO50813
0 years, male, NA, stage:2, alive, 420 days
6.9
DO48727
0 years, female, NA, stage:2, dead, 390 days
6.8
DO23534
0 years, male, NA, stage:2, alive, 840 days
6.8
DO50818
0 years, male, NA, stage:2, alive, 510 days
6.5
DO45285
0 years, male, NA, stage:3, alive, 480 days
6.5
DO48759
0 years, male, NA, stage:3, alive, 720 days
5.9
DO45149
0 years, female, NA, stage:2, alive, 1260 days
5.8
DO45109
0 years, male, NA, stage:2, alive, 1590 days
5.1
DO45195
0 years, male, NA, stage:1, alive, 390 days
5.0
DO23532
0 years, female, NA, stage:1, alive, 960 days
4.5
DO48674
0 years, male, NA, stage:2, alive, 1260 days
4.4
DO48715
0 years, female, NA, stage:2, dead, 690 days
4.1
DO23544
0 years, male, NA, stage:2, alive, 960 days
4.0
DO45105
0 years, male, NA, stage:1, alive, 1680 days
3.9
DO50839
0 years, female, NA, stage:3, alive, 330 days
3.8
DO45101
0 years, male, NA, stage:2, alive, 1680 days
3.6
DO50814
0 years, male, NA, stage:3, alive, 420 days
3.6
DO23511
0 years, female, NA, stage:3, dead, 180 days
2.9
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
147
Tumor
1.0
977
Tumor
1.0
957
Tumor
0.9
1021
Tumor
0.9
425
Tumor
0.9
415
Tumor
0.8
1031
Tumor
0.8
865
Tumor
0.7
527
Tumor
0.7
523
Tumor
0.7
445
Tumor
0.7
553
Tumor
0.7
1043
Tumor
0.7
1027
Tumor
0.7
743
Tumor
0.6
463
Tumor
0.6
975
Tumor
0.6
647
Tumor
0.6
777
Tumor
0.6
123
Tumor
0.6
131
Tumor
0.6
517
Tumor
0.6
277
Tumor
0.5
915
Tumor
0.5
1013
Tumor
0.5
481
Tumor
0.5
493
Tumor
0.5
823
Tumor
0.5
515
Tumor
0.5
724
Normal
0.5
283
Tumor
0.5
297
Tumor
0.4
881
Tumor
0.4
483
Tumor
0.4
963
Tumor
0.4
271
Tumor
0.4
213
Tumor
0.4
211
Tumor
0.4
857
Tumor
0.4
557
Tumor
0.4
951
Tumor
0.4
921
Tumor
0.4
863
Tumor
0.4
443
Tumor
0.4
221
Tumor
0.4
877
Tumor
0.3
327
Tumor
0.3
536
Normal
0.3
191
Tumor
0.3
635
Tumor
0.3
1025
Tumor
0.3
451
Tumor
0.3
813
Tumor
0.3
343
Tumor
0.3
473
Tumor
0.3
313
Tumor
0.3
461
Tumor
0.3
533
Tumor
0.3
471
Tumor
0.3
715
Tumor
0.3
185
Tumor
0.2
525
Tumor
0.2
135
Tumor
0.2
341
Tumor
0.2
257
Tumor
0.2
431
Tumor
0.2
911
Tumor
0.2
713
Tumor
0.2
491
Tumor
0.2
817
Tumor
0.2
355
Tumor
0.2
171
Tumor
0.2
545
Tumor
0.2
721
Tumor
0.2
411
Tumor
0.2
563
Tumor
0.2
663
Tumor
0.2
455
Tumor
0.2
161
Tumor
0.2
697
Tumor
0.2
943
Tumor
0.2
867
Tumor
0.2
923
Tumor
0.2
113
Tumor
0.2
925
Tumor
0.2
883
Tumor
0.2
192
Normal
0.2
141
Tumor
0.2
497
Tumor
0.1
641
Tumor
0.1
421
Tumor
0.1
375
Tumor
0.1
953
Tumor
0.1
617
Tumor
0.1
524
Normal
0.1
498
Normal
0.1
1041
Tumor
0.1
492
Normal
0.1
967
Tumor
0.1
965
Tumor
0.1
873
Tumor
0.1
913
Tumor
0.1
311
Tumor
0.1
723
Tumor
0.1
952
Normal
0.1
145
Tumor
0.1
851
Tumor
0.1
447
Tumor
0.1
538
Normal
0.1
1026
Normal
0.1
478
Normal
0.1
223
Tumor
0.1
741
Tumor
0.1
477
Tumor
0.1
966
Normal
0.1
861
Tumor
0.1
573
Tumor
0.1
224
Normal
0.0
884
Normal
0.0
917
Tumor
0.0
125
Tumor
0.0
487
Tumor
0.0
882
Normal
0.0
554
Normal
0.0
467
Tumor
0.0
212
Normal
0.0
744
Normal
0.0
137
Tumor
0.0
916
Normal
0.0
746
Normal
0.0
433
Tumor
0.0
738
Normal
0.0
671
Tumor
0.0
786
Normal
0.0
284
Normal
0.0
924
Normal
0.0
814
Normal
0.0
874
Normal
0.0
696
Normal
0.0
866
Normal
0.0
1022
Normal
0.0
968
Normal
0.0
852
Normal
0.0
778
Normal
0.0
955
Tumor
0.0
312
Normal
0.0
516
Normal
0.0
518
Normal
0.0
912
Normal
0.0
484
Normal
0.0
494
Normal
0.0
742
Normal
0.0
196
Normal
0.0
666
Normal
0.0
363
Tumor
0.0
756
Normal
0.0
472
Normal
0.0
488
Normal
0.0
514
Normal
0.0
714
Normal
0.0
686
Normal
0.0
1044
Normal
0.0
474
Normal
0.0
1016
Normal
-0.1
976
Normal
-0.1
1042
Normal
-0.1
434
Normal
-0.1
126
Normal
-0.1
818
Normal
-0.1
112
Tumor
-0.1
984
Normal
-0.1
816
Normal
-0.1
695
Tumor
-0.1
187
Tumor
-0.1
878
Normal
-0.1
864
Normal
-0.1
662
Normal
-0.1
722
Normal
-0.1
1032
Normal
-0.1
364
Normal
-0.1
286
Normal
-0.1
1028
Normal
-0.1
728
Normal
-0.1
954
Normal
-0.1
357
Tumor
-0.1
188
Normal
-0.1
217
Tumor
-0.1
195
Tumor
-0.1
412
Normal
-0.1
332
Normal
-0.1
958
Normal
-0.1
862
Normal
-0.1
661
Tumor
-0.1
737
Tumor
-0.1
138
Normal
-0.1
218
Normal
-0.1
938
Normal
-0.1
132
Normal
-0.1
558
Normal
-0.1
344
Normal
-0.1
978
Normal
-0.1
384
Normal
-0.1
956
Normal
-0.1
944
Normal
-0.1
456
Normal
-0.1
824
Normal
-0.1
1014
Normal
-0.1
146
Normal
-0.1
664
Normal
-0.1
361
Tumor
-0.1
448
Normal
-0.1
1046
Normal
-0.1
546
Normal
-0.1
716
Normal
-0.1
356
Normal
-0.1
914
Normal
-0.1
214
Normal
-0.1
868
Normal
-0.1
468
Normal
-0.1
918
Normal
-0.1
537
Tumor
-0.1
278
Normal
-0.1
285
Tumor
-0.1
672
Normal
-0.1
982
Normal
-0.1
298
Normal
-0.1
526
Normal
-0.1
383
Tumor
-0.1
136
Normal
-0.1
162
Normal
-0.1
922
Normal
-0.2
574
Normal
-0.2
142
Normal
-0.2
186
Normal
-0.2
387
Tumor
-0.2
328
Normal
-0.2
564
Normal
-0.2
362
Normal
-0.2
482
Normal
-0.2
393
Tumor
-0.2
228
Normal
-0.2
528
Normal
-0.2
464
Normal
-0.2
416
Normal
-0.2
111
Normal
-0.2
572
Normal
-0.2
426
Normal
-0.2
368
Normal
-0.2
128
Normal
-0.2
423
Tumor
-0.2
413
Tumor
-0.2
148
Normal
-0.2
124
Normal
-0.2
386
Normal
-0.2
665
Tumor
-0.2
231
Tumor
-0.2
698
Normal
-0.2
385
Tumor
-0.2
222
Normal
-0.2
964
Normal
-0.2
858
Normal
-0.2
462
Normal
-0.2
227
Tumor
-0.2
114
Normal
-0.2
268
Normal
-0.2
127
Tumor
-0.2
745
Tumor
-0.2
926
Normal
-0.2
571
Tumor
-0.2
272
Normal
-0.2
466
Normal
-0.2
648
Normal
-0.2
1045
Tumor
-0.2
465
Tumor
-0.2
568
Normal
-0.3
172
Normal
-0.3
392
Normal
-0.3
444
Normal
-0.3
261
Tumor
-0.3
436
Normal
-0.3
395
Tumor
-0.3
446
Normal
-0.3
535
Tumor
-0.3
981
Tumor
-0.3
365
Tumor
-0.3
534
Normal
-0.3
262
Normal
-0.3
366
Normal
-0.3
616
Normal
-0.3
352
Normal
-0.3
367
Tumor
-0.3
785
Tumor
-0.3
314
Normal
-0.3
1015
Tumor
-0.3
422
Normal
-0.3
396
Normal
-0.3
258
Normal
-0.3
428
Normal
-0.3
435
Tumor
-0.4
267
Tumor
-0.4
391
Tumor
-0.4
342
Normal
-0.4
427
Tumor
-0.4
983
Tumor
-0.4
513
Tumor
-0.4
424
Normal
-0.4
331
Tumor
-0.4
376
Normal
-0.4
628
Normal
-0.4
232
Normal
-0.4
685
Tumor
-0.4
353
Tumor
-0.4
452
Normal
-0.4
351
Tumor
-0.4
937
Tumor
-0.4
627
Tumor
-0.4
755
Tumor
-0.4
618
Normal
-0.4
727
Tumor
-0.4
358
Normal
-0.4
642
Normal
-0.4
414
Normal
-0.4
615
Tumor
-0.5
432
Normal
-0.5
815
Tumor
-0.5
394
Normal
-0.5
567
Tumor
-0.5
354
Normal
-0.5
636
Normal
-0.5
388
Normal
-0.6
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
