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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
EXT2 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
15.5
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
125.2
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
60.4
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
53.4
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
47.3
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
46.7
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
43.1
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
39.6
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
38.9
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
37.6
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
36.4
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
35.7
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
34.4
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
31.2
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
30.6
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
30.2
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
30.1
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
29.9
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
29.1
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
28.5
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
28.1
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
27.9
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
27.9
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
27.3
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
27.2
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
26.6
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
26.6
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
26.1
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
25.9
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
25.8
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
25.7
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
25.5
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
25.5
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
25.4
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
25.4
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
25.0
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
24.0
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
23.7
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
23.7
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
23.6
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
23.5
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
23.1
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
23.0
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
22.8
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
22.3
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
22.0
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
21.9
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
21.9
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
21.9
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
21.4
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
21.4
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
21.4
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
21.1
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
21.1
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
21.0
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
21.0
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
20.8
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
20.8
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
20.8
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
20.7
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
20.6
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
20.6
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
20.4
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
20.3
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
20.2
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
20.2
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
20.2
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
20.2
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
20.0
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
20.0
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
19.9
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
19.9
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
19.8
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
19.8
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
19.7
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
19.7
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
19.6
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
19.6
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
19.6
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
19.6
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
19.5
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
19.5
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
19.5
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
19.5
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
19.5
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
19.4
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
19.3
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
19.2
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
19.1
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
19.1
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
19.0
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
18.9
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
18.6
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
18.5
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
18.4
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
18.3
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
18.3
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
18.3
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
18.2
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
18.1
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
18.0
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
17.9
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
17.8
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
17.8
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
17.7
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
17.7
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
17.7
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
17.7
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
17.7
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
17.5
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
17.5
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
17.3
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
17.3
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
17.1
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
17.1
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
17.0
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
16.9
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
16.8
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
16.8
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
16.8
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
16.7
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
16.6
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
16.6
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
16.6
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
16.5
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
16.5
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
16.5
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
16.4
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
16.3
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
16.3
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
16.3
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
16.3
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
16.2
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
16.1
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
16.0
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
15.9
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
15.9
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
15.9
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
15.7
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
15.7
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
15.7
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
15.7
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
15.6
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
15.6
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
15.5
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
15.5
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
15.5
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
15.5
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
15.4
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
15.4
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
15.4
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
15.3
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
15.1
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
15.1
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
15.1
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
15.1
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
15.0
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
14.9
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
14.9
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
14.9
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
14.9
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
14.7
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
14.7
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
14.6
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
14.6
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
14.5
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
14.2
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
14.2
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
14.2
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
14.1
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
14.1
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
14.1
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
14.0
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
14.0
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
14.0
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
13.9
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
13.9
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
13.9
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
13.9
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
13.9
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
13.8
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
13.8
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
13.7
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
13.7
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
13.6
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
13.6
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
13.5
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
13.4
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
13.4
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
13.4
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
13.4
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
13.4
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
13.3
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
13.2
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
13.2
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
13.2
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
13.2
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
13.2
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
13.2
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
13.2
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
13.1
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
13.0
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
13.0
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
12.9
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
12.8
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
12.8
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
12.8
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
12.7
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
12.7
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
12.6
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
12.6
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
12.6
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
12.6
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
12.5
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
12.4
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
12.3
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
12.3
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
12.2
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
12.2
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
12.1
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
12.1
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
12.1
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
12.0
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
12.0
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
12.0
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
11.9
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
11.9
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
11.9
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
11.8
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
11.8
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
11.7
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
11.7
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
11.7
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
11.7
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
11.7
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
11.7
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
11.6
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
11.6
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
11.5
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
11.5
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
11.4
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
11.4
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
11.4
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
11.3
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
11.3
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
11.3
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
11.1
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
11.1
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
11.1
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
11.0
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
11.0
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
11.0
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
10.9
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
10.8
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
10.7
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
10.7
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
10.7
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
10.7
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
10.7
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
10.7
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
10.6
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
10.6
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
10.6
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
10.5
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
10.5
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
10.5
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
10.5
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
10.4
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
10.3
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
10.3
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
10.3
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
10.3
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
10.3
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
10.3
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
10.2
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
10.2
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
10.0
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
10.0
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
10.0
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
10.0
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
10.0
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
10.0
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
9.9
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
9.8
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
9.8
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
9.7
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
9.7
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
9.6
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
9.5
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
9.5
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
9.5
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
9.5
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
9.5
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
9.5
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
9.4
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
9.4
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
9.4
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
9.4
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
9.3
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
9.2
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
9.2
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
9.2
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
9.1
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
9.1
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
8.9
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
8.9
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
8.8
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
8.8
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
8.7
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
8.7
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
8.7
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
8.5
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
8.5
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
8.4
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
8.2
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
8.1
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
8.1
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
8.0
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
8.0
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
7.9
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
7.8
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
7.7
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
7.7
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
7.7
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
7.4
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
7.4
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
7.4
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
7.4
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
7.4
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
7.2
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
7.2
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
7.2
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
7.2
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
7.2
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
7.0
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
7.0
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
7.0
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
6.9
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
6.8
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
6.8
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
6.7
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
6.6
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
6.6
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
6.6
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
6.5
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
6.3
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
6.3
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
6.2
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
5.9
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
5.8
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
5.8
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
5.7
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
5.3
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
5.2
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
5.0
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
5.0
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
4.5
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
4.4
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
4.3
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
4.3
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
4.1
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
4.1
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
EXT2 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
14.7
Number of samples
231
Samples
Sample
Description
TPM
DO45307
0 years, female, NA, stage:4, dead, 240 days
47.3
DO45299
0 years, female, NA, stage:1, alive, 1440 days
46.7
DO45259
0 years, male, NA, stage:3, alive, 330 days
45.0
DO45155
0 years, male, NA, stage:2, alive, 2160 days
40.6
DO45127
0 years, male, NA, stage:3, dead, 420 days
37.7
DO45283
0 years, male, NA, stage:3, alive, 510 days
32.0
DO45185
0 years, male, NA, stage:2, alive, 600 days
31.4
DO45275
0 years, male, NA, stage:3, dead, 10 days
29.2
DO45211
0 years, male, NA, stage:3, alive, 240 days
29.1
DO45189
0 years, female, NA, stage:2, alive, 1200 days
29.0
DO45205
0 years, female, NA, stage:2, dead, 90 days
28.5
DO45245
0 years, female, NA, stage:2, dead, 240 days
28.1
DO23524
0 years, female, NA, stage:2, alive, 1050 days
27.5
DO45209
0 years, male, NA, stage:4, alive, 1350 days
27.4
DO45249
0 years, male, NA, stage:1, alive, 630 days
25.7
DO23552
0 years, female, NA, stage:1, alive, 810 days
25.4
DO45161
0 years, male, NA, stage:2, dead, 540 days
24.4
DO50800
0 years, male, NA, stage:2, alive, 510 days
23.8
DO45277
0 years, male, NA, stage:3, alive, 600 days
23.7
DO45305
0 years, male, NA, stage:4, alive, 300 days
22.4
DO45119
0 years, male, NA, stage:3, dead, 510 days
22.4
DO50829
0 years, male, NA, stage:3, alive, 570 days
22.4
DO23513
0 years, male, NA, stage:3, alive, 1200 days
22.0
DO48717
0 years, male, NA, stage:4, dead, 180 days
22.0
DO45149
0 years, female, NA, stage:2, alive, 1260 days
21.9
DO45289
0 years, female, NA, stage:3, alive, 360 days
21.8
DO45139
0 years, male, NA, stage:3, alive, 1320 days
21.6
DO45092
0 years, male, NA, stage:4, dead, 1200 days
21.5
DO45303
0 years, female, NA, stage:3, alive, 990 days
21.3
DO45239
0 years, male, NA, stage:2, alive, 870 days
21.1
DO50799
0 years, female, NA, stage:2, alive, 540 days
20.9
DO45231
0 years, male, NA, stage:2, alive, 930 days
20.7
DO50855
0 years, male, NA, stage:2, alive, 570 days
20.7
DO50845
0 years, male, NA, stage:3, alive, 210 days
20.5
DO45193
0 years, female, NA, stage:4, dead, 120 days
20.5
DO48757
0 years, female, NA, stage:3, alive, 480 days
20.4
DO45131
0 years, male, NA, stage:4, dead, 360 days
20.2
DO45219
0 years, male, NA, stage:2, alive, 1080 days
20.2
DO45265
0 years, male, NA, stage:3, alive, 1020 days
19.8
DO23537
0 years, male, NA, stage:2, dead, 900 days
19.4
DO45279
0 years, male, NA, stage:3, alive, 1290 days
19.2
DO45251
0 years, female, NA, stage:2, alive, 900 days
19.0
DO45137
0 years, male, NA, stage:1, alive, 1320 days
18.8
DO45179
0 years, female, NA, stage:2, alive, 600 days
18.6
DO23529
0 years, male, NA, stage:4, alive, 930 days
18.6
DO45113
0 years, male, NA, stage:3, alive, 1560 days
18.6
DO45115
0 years, male, NA, stage:2, alive, 840 days
18.5
DO23511
0 years, female, NA, stage:3, dead, 180 days
18.1
DO23510
0 years, female, NA, stage:2, alive, 870 days
18.0
DO45297
0 years, female, NA, stage:4, dead, 1260 days
17.8
DO45217
0 years, female, NA, stage:3, dead, 270 days
17.8
DO45177
0 years, female, NA, stage:3, alive, 1260 days
17.7
DO23530
0 years, male, NA, stage:4, dead, 180 days
17.7
DO45165
0 years, male, NA, stage:2, alive, 690 days
17.5
DO45227
0 years, female, NA, stage:2, alive, 1020 days
17.4
DO45135
0 years, male, NA, stage:1, alive, 1410 days
17.3
DO23515
0 years, male, NA, stage:2, alive, 1230 days
17.3
DO23523
0 years, male, NA, stage:3, alive, 1080 days
17.2
DO45187
0 years, female, NA, stage:1, alive, 1260 days
17.1
DO45145
0 years, male, NA, stage:3, dead, 60 days
17.1
DO48747
0 years, male, NA, stage:3, alive, 540 days
17.0
DO48720
0 years, female, NA, stage:2, alive, 570 days
16.5
DO50804
0 years, male, NA, stage:2, alive, 720 days
16.3
DO48751
0 years, male, NA, stage:2, dead, 480 days
16.3
DO23526
0 years, male, NA, stage:3, alive, 1050 days
16.2
DO45213
0 years, male, NA, stage:1, alive, 1200 days
16.2
DO48737
0 years, male, NA, stage:1, alive, 720 days
16.2
DO45153
0 years, female, NA, stage:2, alive, 1380 days
16.1
DO45235
0 years, female, NA, stage:1, alive, 900 days
15.9
DO50819
0 years, female, NA, stage:2, alive, 510 days
15.9
DO23547
0 years, male, NA, stage:1, alive, 1020 days
15.8
DO45273
0 years, male, NA, stage:2, alive, 480 days
15.7
DO45197
0 years, male, NA, stage:2, alive, 1170 days
15.4
DO45301
0 years, male, NA, stage:2, dead, 1440 days
15.3
DO48697
0 years, female, NA, stage:2, dead, 810 days
15.3
DO45096
0 years, male, NA, stage:2, dead, 1290 days
15.2
DO50820
0 years, female, NA, stage:3, alive, 510 days
15.2
DO45243
0 years, female, NA, stage:3, alive, 930 days
15.2
DO45103
0 years, male, NA, stage:3, alive, 450 days
15.0
DO23536
0 years, male, NA, stage:2, alive, 930 days
14.9
DO48736
0 years, female, NA, stage:1, alive, 600 days
14.8
DO48730
0 years, female, NA, stage:2, alive, 630 days
14.8
DO45207
0 years, male, NA, stage:1, alive, 1050 days
14.8
DO48716
0 years, male, NA, stage:2, alive, 720 days
14.8
DO45241
0 years, male, NA, stage:1, alive, 1080 days
14.7
DO45223
0 years, male, NA, stage:4, alive, 1020 days
14.6
DO23527
0 years, male, NA, stage:1, alive, 1050 days
14.6
DO48704
0 years, female, NA, stage:3, alive, 750 days
14.5
DO48701
0 years, male, NA, stage:2, alive, 780 days
14.5
DO45191
0 years, female, NA, stage:2, alive, 1200 days
14.5
DO45159
0 years, male, NA, stage:3, alive, 1470 days
14.4
DO50787
0 years, male, NA, stage:3, alive, 480 days
14.3
DO45091
0 years, male, NA, stage:2, dead, 1320 days
14.2
DO23519
0 years, male, NA, stage:3, alive, 630 days
14.1
DO23542
0 years, male, NA, stage:3, alive, 960 days
14.0
DO45157
0 years, male, NA, stage:2, alive, 1980 days
14.0
DO45221
0 years, female, NA, stage:4, dead, 390 days
14.0
DO45141
0 years, male, NA, stage:2, alive, 1320 days
14.0
DO48712
0 years, male, NA, stage:2, alive, 810 days
14.0
DO45183
0 years, female, NA, stage:2, dead, 570 days
13.9
DO45253
0 years, male, NA, stage:2, alive, 870 days
13.8
DO23514
0 years, male, NA, stage:2, alive, 1290 days
13.7
DO48761
0 years, male, NA, stage:2, alive, 870 days
13.7
DO45173
0 years, male, NA, stage:3, alive, 1170 days
13.5
DO50832
0 years, male, NA, stage:3, alive, 90 days
13.5
DO45233
0 years, male, NA, stage:3, alive, 900 days
13.5
DO23538
0 years, male, NA, stage:2, alive, 450 days
13.5
DO45094
0 years, male, NA, stage:3, alive, 1650 days
13.5
DO45121
0 years, male, NA, stage:3, alive, 1530 days
13.4
DO45107
0 years, female, NA, stage:2, alive, 1710 days
13.4
DO45111
0 years, male, NA, stage:2, alive, 1590 days
13.4
DO48732
0 years, male, NA, stage:3, alive, 630 days
13.4
DO50793
0 years, male, NA, stage:4, alive, 540 days
13.4
DO50802
0 years, male, NA, stage:2, alive, 930 days
13.3
DO48741
0 years, male, NA, stage:3, alive, 240 days
13.3
DO23535
0 years, male, NA, stage:1, alive, 960 days
13.3
DO50844
0 years, male, NA, stage:4, alive, 300 days
13.3
DO23525
0 years, male, NA, stage:4, alive, 1050 days
13.3
DO23539
0 years, male, NA, stage:1, alive, 1110 days
13.2
DO48682
0 years, female, NA, stage:3, dead, 120 days
13.2
DO48679
0 years, male, NA, stage:2, alive, 1200 days
13.2
DO45229
0 years, male, NA, stage:1, alive, 990 days
13.0
DO48700
0 years, female, NA, stage:2, alive, 810 days
13.0
DO45225
0 years, male, NA, stage:1, alive, 1050 days
13.0
DO50806
0 years, male, NA, stage:4, alive, 540 days
12.9
DO48743
0 years, female, NA, stage:2, alive, 570 days
12.9
DO23528
0 years, female, NA, stage:2, alive, 1020 days
12.9
DO45133
0 years, male, NA, stage:3, dead, 660 days
12.8
DO48681
0 years, male, NA, stage:2, alive, 900 days
12.7
DO45125
0 years, male, NA, stage:3, alive, 1680 days
12.5
DO48719
0 years, male, NA, stage:2, alive, 690 days
12.5
DO48728
0 years, female, NA, stage:2, alive, 150 days
12.4
DO45099
0 years, male, NA, stage:3, alive, 1590 days
12.4
DO48759
0 years, male, NA, stage:3, alive, 720 days
12.3
DO23540
0 years, male, NA, stage:1, alive, 750 days
12.2
DO45117
0 years, female, NA, stage:2, dead, 1110 days
12.2
DO45269
0 years, male, NA, stage:3, alive, 750 days
12.2
DO50813
0 years, male, NA, stage:2, alive, 420 days
12.2
DO45199
0 years, female, NA, stage:2, alive, 1350 days
12.1
DO45281
0 years, male, NA, stage:4, alive, 750 days
12.1
DO23508
0 years, female, NA, stage:2, alive, 390 days
12.1
DO45285
0 years, male, NA, stage:3, alive, 480 days
12.0
DO50778
0 years, male, NA, stage:4, alive, 630 days
11.9
DO23512
0 years, male, NA, stage:1, alive, 1260 days
11.7
DO50818
0 years, male, NA, stage:2, alive, 510 days
11.7
DO23532
0 years, female, NA, stage:1, alive, 960 days
11.7
DO45097
0 years, male, NA, stage:3, alive, 1620 days
11.6
DO45109
0 years, male, NA, stage:2, alive, 1590 days
11.6
DO23518
0 years, male, NA, stage:2, alive, 1320 days
11.6
DO48727
0 years, female, NA, stage:2, dead, 390 days
11.5
DO50805
0 years, male, NA, stage:2, alive, 690 days
11.5
DO48723
0 years, male, NA, stage:1, alive, 600 days
11.5
DO45123
0 years, female, NA, stage:2, dead, 570 days
11.4
DO50850
0 years, male, NA, stage:3, alive, 720 days
11.4
DO45257
0 years, male, NA, stage:3, alive, 810 days
11.3
DO45287
0 years, male, NA, stage:1, alive, 390 days
11.3
DO48672
0 years, male, NA, stage:2, alive, 450 days
11.2
DO50809
0 years, male, NA, stage:3, dead, 720 days
11.2
DO45095
0 years, male, NA, stage:2, alive, 1620 days
11.2
DO45143
0 years, male, NA, stage:3, alive, 1290 days
11.1
DO45167
0 years, male, NA, stage:2, dead, 1440 days
11.0
DO50822
0 years, male, NA, stage:2, alive, 510 days
11.0
DO50803
0 years, female, NA, stage:1, alive, 540 days
10.9
DO23516
0 years, male, NA, stage:3, dead, 20 days
10.9
DO45263
0 years, male, NA, stage:3, dead, 270 days
10.9
DO23550
0 years, male, NA, stage:1, alive, 990 days
10.9
DO50807
0 years, male, NA, stage:1, alive, 540 days
10.8
DO50776
0 years, male, NA, stage:1, alive, 690 days
10.8
DO50840
0 years, male, NA, stage:2, alive, 330 days
10.7
DO50774
0 years, female, NA, stage:2, alive, 720 days
10.7
DO45201
0 years, male, NA, stage:1, alive, 900 days
10.7
DO50839
0 years, female, NA, stage:3, alive, 330 days
10.6
DO23533
0 years, male, NA, stage:2, alive, 900 days
10.6
DO45129
0 years, male, NA, stage:3, alive, 1470 days
10.6
DO23546
0 years, male, NA, stage:2, alive, 1050 days
10.6
DO48677
0 years, male, NA, stage:3, alive, 1140 days
10.5
DO48733
0 years, male, NA, stage:2, alive, 600 days
10.5
DO45171
0 years, male, NA, stage:3, alive, 600 days
10.5
DO23541
0 years, male, NA, stage:2, alive, 930 days
10.4
DO23531
0 years, female, NA, stage:3, alive, 900 days
10.3
DO50791
0 years, female, NA, stage:1, dead, 480 days
10.3
DO45105
0 years, male, NA, stage:1, alive, 1680 days
10.2
DO50816
0 years, male, NA, stage:2, alive, 390 days
10.2
DO45247
0 years, female, NA, stage:2, alive, 210 days
10.1
DO45181
0 years, female, NA, stage:2, alive, 1200 days
10.1
DO45175
0 years, male, NA, stage:2, alive, 1140 days
10.0
DO48725
0 years, male, NA, stage:1, alive, 780 days
10.0
DO50783
0 years, male, NA, stage:3, alive, 480 days
10.0
DO45255
0 years, male, NA, stage:3, alive, 720 days
10.0
DO45261
0 years, male, NA, stage:3, alive, 990 days
10.0
DO23543
0 years, male, NA, stage:2, alive, 1020 days
9.9
DO45203
0 years, female, NA, stage:2, alive, 1170 days
9.9
DO45215
0 years, male, NA, stage:2, alive, 1170 days
9.9
DO48715
0 years, female, NA, stage:2, dead, 690 days
9.8
DO45169
0 years, male, NA, stage:3, alive, 1350 days
9.8
DO45267
0 years, male, NA, stage:3, dead, 570 days
9.7
DO48742
0 years, male, NA, stage:2, alive, 600 days
9.6
DO50811
0 years, male, NA, stage:1, alive, 450 days
9.4
DO227801
0 years, female, NA, stage:1, alive, 660 days
9.4
DO50789
0 years, female, NA, stage:2, alive, 570 days
9.3
DO45237
0 years, male, NA, stage:2, alive, 900 days
9.2
DO50825
0 years, male, NA, stage:2, alive, 390 days
8.9
DO50785
0 years, male, NA, stage:4, dead, 90 days
8.9
DO48760
0 years, female, NA, stage:2, alive, 690 days
8.8
DO48746
0 years, male, NA, stage:3, alive, 570 days
8.8
DO48695
0 years, male, NA, stage:2, alive, 720 days
8.7
DO48693
0 years, male, NA, stage:2, alive, 900 days
8.4
DO23549
0 years, male, NA, stage:3, alive, 990 days
8.3
DO23551
0 years, male, NA, stage:3, dead, 150 days
8.2
DO227643
0 years, male, NA, stage:2, alive, 1260 days
8.0
DO48706
0 years, male, NA, stage:2, alive, 870 days
7.9
DO23509
0 years, male, NA, stage:3, dead, 780 days
7.9
DO45093
0 years, male, NA, stage:2, dead, 720 days
7.9
DO45101
0 years, male, NA, stage:2, alive, 1680 days
7.8
DO50814
0 years, male, NA, stage:3, alive, 420 days
7.7
DO45163
0 years, male, NA, stage:2, alive, 960 days
7.4
DO23521
0 years, male, NA, stage:3, alive, 1110 days
7.4
DO50808
0 years, male, NA, stage:2, alive, 570 days
7.3
DO50815
0 years, male, NA, stage:3, alive, 150 days
7.3
DO50817
0 years, male, NA, stage:2, alive, 390 days
7.2
DO50798
0 years, male, NA, stage:3, dead, 30 days
7.2
DO23545
0 years, male, NA, stage:2, dead, 570 days
7.2
DO48721
0 years, female, NA, stage:1, alive, 900 days
7.0
DO23548
0 years, female, NA, stage:1, alive, 840 days
6.8
DO23534
0 years, male, NA, stage:2, alive, 840 days
6.7
DO23517
0 years, male, NA, stage:2, alive, 1200 days
6.6
DO48674
0 years, male, NA, stage:2, alive, 1260 days
6.1
DO50859
0 years, male, NA, stage:2, alive, 180 days
6.1
DO45195
0 years, male, NA, stage:1, alive, 390 days
5.9
DO50857
0 years, male, NA, stage:2, alive, 210 days
5.4
DO23544
0 years, male, NA, stage:2, alive, 960 days
5.0
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
671
Tumor
0.9
425
Tumor
0.8
131
Tumor
0.7
573
Tumor
0.6
283
Tumor
0.6
917
Tumor
0.6
877
Tumor
0.6
713
Tumor
0.5
545
Tumor
0.5
285
Tumor
0.5
525
Tumor
0.5
923
Tumor
0.5
367
Tumor
0.5
865
Tumor
0.5
921
Tumor
0.5
523
Tumor
0.4
517
Tumor
0.4
557
Tumor
0.4
743
Tumor
0.4
125
Tumor
0.4
385
Tumor
0.4
218
Normal
0.4
647
Tumor
0.4
672
Normal
0.4
217
Tumor
0.4
343
Tumor
0.4
951
Tumor
0.4
375
Tumor
0.4
365
Tumor
0.3
636
Normal
0.3
446
Normal
0.3
535
Tumor
0.3
222
Normal
0.3
863
Tumor
0.3
1025
Tumor
0.3
943
Tumor
0.3
715
Tumor
0.3
111
Normal
0.3
331
Tumor
0.3
642
Normal
0.3
196
Normal
0.3
128
Normal
0.3
195
Tumor
0.3
527
Tumor
0.3
666
Normal
0.3
567
Tumor
0.3
463
Tumor
0.3
983
Tumor
0.3
697
Tumor
0.3
361
Tumor
0.3
914
Normal
0.3
214
Normal
0.3
114
Normal
0.3
427
Tumor
0.3
533
Tumor
0.3
648
Normal
0.3
192
Normal
0.3
461
Tumor
0.3
664
Normal
0.3
126
Normal
0.3
135
Tumor
0.3
356
Normal
0.3
286
Normal
0.3
471
Tumor
0.2
524
Normal
0.2
862
Normal
0.2
724
Normal
0.2
186
Normal
0.2
526
Normal
0.2
536
Normal
0.2
1022
Normal
0.2
351
Tumor
0.2
221
Tumor
0.2
955
Tumor
0.2
956
Normal
0.2
191
Tumor
0.2
161
Tumor
0.2
227
Tumor
0.2
148
Normal
0.2
212
Normal
0.2
432
Normal
0.2
387
Tumor
0.2
228
Normal
0.2
814
Normal
0.2
433
Tumor
0.2
443
Tumor
0.2
618
Normal
0.2
616
Normal
0.2
445
Tumor
0.2
756
Normal
0.2
388
Normal
0.2
661
Tumor
0.2
162
Normal
0.2
954
Normal
0.2
412
Normal
0.2
953
Tumor
0.2
881
Tumor
0.2
456
Normal
0.2
952
Normal
0.2
1013
Tumor
0.2
467
Tumor
0.2
452
Normal
0.2
172
Normal
0.2
391
Tumor
0.2
383
Tumor
0.2
213
Tumor
0.2
1045
Tumor
0.2
455
Tumor
0.2
938
Normal
0.2
537
Tumor
0.2
882
Normal
0.2
1043
Tumor
0.2
516
Normal
0.2
665
Tumor
0.2
628
Normal
0.1
447
Tumor
0.1
363
Tumor
0.1
662
Normal
0.1
124
Normal
0.1
137
Tumor
0.1
685
Tumor
0.1
395
Tumor
0.1
224
Normal
0.1
1042
Normal
0.1
967
Tumor
0.1
617
Tumor
0.1
1032
Normal
0.1
384
Normal
0.1
468
Normal
0.1
1041
Tumor
0.1
366
Normal
0.1
866
Normal
0.1
171
Tumor
0.1
663
Tumor
0.1
473
Tumor
0.1
464
Normal
0.1
147
Tumor
0.1
421
Tumor
0.1
514
Normal
0.1
884
Normal
0.1
297
Tumor
0.1
223
Tumor
0.1
394
Normal
0.1
913
Tumor
0.1
864
Normal
0.1
376
Normal
0.1
723
Tumor
0.1
515
Tumor
0.1
615
Tumor
0.1
368
Normal
0.1
982
Normal
0.1
142
Normal
0.1
416
Normal
0.1
957
Tumor
0.1
451
Tumor
0.1
878
Normal
0.1
721
Tumor
0.1
737
Tumor
0.1
362
Normal
0.1
513
Tumor
0.1
312
Normal
0.1
187
Tumor
0.1
113
Tumor
0.1
786
Normal
0.1
975
Tumor
0.1
328
Normal
0.1
284
Normal
0.1
518
Normal
0.1
145
Tumor
0.0
314
Normal
0.0
466
Normal
0.0
444
Normal
0.0
353
Tumor
0.0
818
Normal
0.0
493
Tumor
0.0
883
Tumor
0.0
332
Normal
0.0
132
Normal
0.0
342
Normal
0.0
1031
Tumor
0.0
311
Tumor
0.0
641
Tumor
0.0
873
Tumor
0.0
428
Normal
0.0
925
Tumor
0.0
528
Normal
0.0
857
Tumor
0.0
423
Tumor
0.0
436
Normal
0.0
413
Tumor
0.0
448
Normal
0.0
868
Normal
0.0
981
Tumor
0.0
188
Normal
0.0
1027
Tumor
0.0
257
Tumor
0.0
415
Tumor
0.0
386
Normal
0.0
1044
Normal
0.0
185
Tumor
0.0
278
Normal
0.0
554
Normal
0.0
211
Tumor
0.0
465
Tumor
0.0
1021
Tumor
0.0
277
Tumor
0.0
396
Normal
0.0
434
Normal
0.0
112
Tumor
0.0
393
Tumor
0.0
136
Normal
0.0
435
Tumor
0.0
341
Tumor
0.0
937
Tumor
0.0
817
Tumor
0.0
431
Tumor
0.0
392
Normal
0.0
491
Tumor
0.0
563
Tumor
0.0
823
Tumor
0.0
858
Normal
0.0
138
Normal
0.0
813
Tumor
0.0
553
Tumor
0.0
744
Normal
0.0
851
Tumor
0.0
867
Tumor
0.0
698
Normal
0.0
364
Normal
0.0
874
Normal
0.0
824
Normal
0.0
462
Normal
0.0
298
Normal
0.0
483
Tumor
0.0
912
Normal
-0.1
976
Normal
-0.1
816
Normal
-0.1
696
Normal
-0.1
424
Normal
-0.1
727
Tumor
-0.1
313
Tumor
-0.1
1026
Normal
-0.1
572
Normal
-0.1
146
Normal
-0.1
127
Tumor
-0.1
141
Tumor
-0.1
477
Tumor
-0.1
344
Normal
-0.1
1014
Normal
-0.1
355
Tumor
-0.1
574
Normal
-0.1
741
Tumor
-0.1
558
Normal
-0.1
815
Tumor
-0.1
944
Normal
-0.1
232
Normal
-0.1
964
Normal
-0.1
357
Tumor
-0.1
722
Normal
-0.1
568
Normal
-0.1
422
Normal
-0.1
1015
Tumor
-0.1
686
Normal
-0.1
546
Normal
-0.1
915
Tumor
-0.1
852
Normal
-0.1
481
Tumor
-0.1
738
Normal
-0.1
714
Normal
-0.1
268
Normal
-0.1
742
Normal
-0.1
965
Tumor
-0.1
1046
Normal
-0.1
861
Tumor
-0.2
958
Normal
-0.2
916
Normal
-0.2
538
Normal
-0.2
778
Normal
-0.2
746
Normal
-0.2
327
Tumor
-0.2
123
Tumor
-0.2
478
Normal
-0.2
414
Normal
-0.2
472
Normal
-0.2
482
Normal
-0.2
534
Normal
-0.2
963
Tumor
-0.2
1028
Normal
-0.2
258
Normal
-0.2
571
Tumor
-0.2
984
Normal
-0.2
498
Normal
-0.2
977
Tumor
-0.2
911
Tumor
-0.2
1016
Normal
-0.2
777
Tumor
-0.2
635
Tumor
-0.2
627
Tumor
-0.2
564
Normal
-0.2
716
Normal
-0.2
918
Normal
-0.2
271
Tumor
-0.2
352
Normal
-0.3
354
Normal
-0.3
728
Normal
-0.3
474
Normal
-0.3
494
Normal
-0.3
745
Tumor
-0.3
426
Normal
-0.3
968
Normal
-0.3
497
Tumor
-0.3
267
Tumor
-0.3
262
Normal
-0.3
487
Tumor
-0.3
492
Normal
-0.3
924
Normal
-0.3
411
Tumor
-0.4
785
Tumor
-0.4
358
Normal
-0.4
261
Tumor
-0.4
272
Normal
-0.4
966
Normal
-0.4
978
Normal
-0.4
755
Tumor
-0.4
926
Normal
-0.4
484
Normal
-0.4
922
Normal
-0.4
231
Tumor
-0.4
488
Normal
-0.5
695
Tumor
-0.6
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.