MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:64.9 nTPM
HPA Brain:254.2 nTPM
GTEx:64.9 nTPM
FANTOM5:211.1 Scaled Tags Per Million
Pig:89.6 nTPM
Mouse:103.8 nTPM
Allen mouse:11.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 254.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 216.4
2019 Male, age 18, unknown 314.0
2219 Male, age 76, both hemispheres 268.1
2411 Female, age 72, unknown 244.7
1830 Male, age 51, unknown 239.1
1833 Male, age 53, unknown 228.3
1870 Female, age 42, unknown 208.9
1827 Male, age 72, unknown 180.3
2828 Female, age 72, unknown 175.2
2586 Male, age 75, left hemisphere 158.3
2666 Male, age 74, left hemisphere 146.8
Dorsal raphe nucleus
nTPM: 165.7
2750 Male, age 76, both hemispheres 224.0
2047 Male, age 72, unknown 166.8
1828 Male, age 53, unknown 162.8
2016 Female, age 72, unknown 147.5
2298 Female, age 72, unknown 127.4
Inferior colliculus
nTPM: 193.3
1848 Female, age 42, unknown 210.8
1890 Male, age 53, unknown 194.1
2097 Female, age 72, unknown 192.5
2849 Male, age 72, unknown 175.7
Median raphe nucleus
nTPM: 185.1
2220 Male, age 76, midline 185.1
Periaquaductal grey, anterior
nTPM: 140.3
1947 Male, age 18, unknown 183.0
1795 Male, age 51, unknown 135.4
2502 Female, age 75, unknown 102.6
Periaquaductal grey, dorsal
nTPM: 143.3
2464 Female, age 72, unknown 192.2
1831 Male, age 72, unknown 156.8
1840 Male, age 53, unknown 123.5
2850 Male, age 76, both hemispheres 100.6
Periaquaductal grey, lateral
nTPM: 122.9
2053 Male, age 18, unknown 140.9
2272 Male, age 74, both hemispheres 121.6
2140 Male, age 76, both hemispheres 106.2
Pretectal area
nTPM: 199.7
1817 Female, age 42, unknown 268.6
2007 Male, age 72, unknown 256.9
1944 Female, age 72, unknown 254.2
1815 Male, age 53, unknown 251.0
1816 Male, age 51, unknown 203.6
2316 Male, age 76, right hemisphere 199.7
2667 Female, age 75, unknown 187.5
2407 Male, age 75, both hemispheres 176.2
2224 Female, age 72, unknown 147.5
2825 Male, age 18, unknown 142.7
2273 Male, age 74, both hemispheres 108.2
Red nucleus
nTPM: 254.2
2503 Female, age 72, unknown 307.8
2785 Male, age 18, unknown 295.6
2823 Male, age 76, right hemisphere 288.7
1865 Male, age 51, unknown 281.6
1821 Female, age 72, unknown 279.1
1904 Male, age 53, unknown 265.7
1954 Female, age 42, unknown 257.3
2588 Male, age 74, left hemisphere 248.8
2227 Male, age 72, unknown 220.7
2769 Male, age 72, unknown 220.7
2584 Male, age 75, left hemisphere 202.8
2725 Female, age 75, unknown 181.2
Substantia nigra
nTPM: 253.2
2590 Female, age 75, unknown 385.5
2665 Male, age 74, both hemispheres 295.4
2241 Male, age 72, unknown 270.1
2409 Female, age 72, unknown 261.6
1889 Female, age 72, unknown 257.8
1941 Male, age 53, unknown 253.3
1851 Male, age 51, unknown 221.2
1916 Female, age 42, unknown 220.8
2583 Male, age 75, right hemisphere 218.8
2699 Male, age 18, unknown 147.3
Superior colliculus
nTPM: 203.8
1895 Male, age 76, right hemisphere 284.5
2668 Female, age 75, unknown 240.7
2087 Female, age 72, unknown 234.3
1913 Female, age 42, unknown 222.7
1839 Male, age 51, unknown 202.0
1995 Male, age 72, unknown 196.2
2587 Male, age 74, left hemisphere 195.6
1796 Male, age 53, unknown 170.9
2261 Male, age 18, unknown 165.7
2664 Male, age 75, both hemispheres 125.3
Ventral tegmental area
nTPM: 217.8
2410 Female, age 72, unknown 316.6
2218 Male, age 76, both hemispheres 231.2
1915 Female, age 42, unknown 210.4
2223 Female, age 72, unknown 191.5
2021 Male, age 53, unknown 181.2
1942 Male, age 51, unknown 175.7

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 64.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 64.9
Samples: 139

Max nTPM: 235.2
Min nTPM: 11.8
Std nTPM: 34.3
Median nTPM: 58.5
GTEX-13O3O-0011-R2b-SM-5P9H1 60-69 years, female 235.2
GTEX-13OW8-0011-R2a-SM-5L3G2 60-69 years, male 159.9
GTEX-14PJO-0011-R2a-SM-5ZZVF 60-69 years, male 151.8
GTEX-1IL2U-0011-R2a-SM-ARU6V 60-69 years, male 149.0
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 146.9
GTEX-15DCD-0011-R2b-SM-6LPIE 70-79 years, female 146.5
GTEX-18464-0011-R2a-SM-731AL 50-59 years, male 141.1
GTEX-14BIN-0011-R2a-SM-5S2RJ 50-59 years, female 132.8
GTEX-13QJC-0011-R2b-SM-5PNUN 60-69 years, female 125.0
GTEX-14ASI-0011-R2b-SM-5YY9H 60-69 years, male 120.2
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 116.4
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 211.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 211.1
FF:10158-103A5 76 years, female 211.1

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 89.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 77.3
Samples: 4

Max nTPM: 99.0
Min nTPM: 55.2
Sample A Female 78.3
Sample B Female 55.2
Sample C Male 76.6
Sample D Male 99.0
Midbrain
nTPM: 89.7
Samples: 4

Max nTPM: 109.9
Min nTPM: 72.7
Sample A Female 72.7
Sample B Female 81.8
Sample C Male 109.9
Sample D Male 94.2
Periaqueductal gray
nTPM: 65.9
Samples: 3

Max nTPM: 74.6
Min nTPM: 59.4
Sample B Female 74.6
Sample C Male 59.4
Sample D Male 63.7
Superior colliculi
nTPM: 89.2
Samples: 4

Max nTPM: 123.4
Min nTPM: 44.6
Sample A Female 87.7
Sample B Female 44.6
Sample C Male 123.4
Sample D Male 101.0

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 103.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 103.8
Samples: 4

Max nTPM: 112.4
Min nTPM: 84.2
Sample A Male 84.2
Sample B Male 108.1
Sample C Female 110.4
Sample D Female 112.4

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 11.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 11.2
74047925 Antisense, RP_051214_02_D10, Mouse strain C57BL/6J (56 days, male) 17.6
68196979 Antisense, RP_040928_01_A10, Mouse strain C57BL/6J (56 days, male) 13.8
70795823 Antisense, RP_050712_02_A07, Mouse strain C57BL/6J (56 days, male) 2.3

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