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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
OXSM is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
7.6
Number of samples
362
Samples
Sample
Description
TPM
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
24.6
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
19.8
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
18.8
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
17.6
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
16.9
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
16.7
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
16.3
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
16.2
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
15.9
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
15.8
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
15.3
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
14.6
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
14.4
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
14.1
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
14.1
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
14.1
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
14.0
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
13.8
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
13.5
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
13.4
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
13.3
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
13.3
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
13.2
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
13.0
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
12.6
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
12.6
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
12.5
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
12.4
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
12.4
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
12.4
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
12.2
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
12.1
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
12.1
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
11.9
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
11.9
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
11.7
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
11.7
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
11.5
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
11.5
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
11.3
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
11.3
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
11.3
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
11.3
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
11.0
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
10.8
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
10.8
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
10.7
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
10.7
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
10.6
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
10.6
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
10.6
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
10.6
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
10.6
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
10.5
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
10.4
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
10.4
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
10.4
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
10.4
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
10.4
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
10.3
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
10.3
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
10.3
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
10.3
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
10.3
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
10.3
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
10.2
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
10.2
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
10.1
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
10.1
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
10.0
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
10.0
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
9.8
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
9.8
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
9.8
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
9.8
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
9.8
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
9.7
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
9.6
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
9.6
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
9.6
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
9.5
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
9.5
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
9.5
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
9.4
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
9.4
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
9.4
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
9.4
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
9.3
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
9.3
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
9.3
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
9.2
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
9.2
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
9.2
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
9.2
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
9.2
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
9.2
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
9.2
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
9.1
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
9.1
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
9.1
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
9.1
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
9.1
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
9.1
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
9.1
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
9.0
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
9.0
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
8.9
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
8.9
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
8.9
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
8.9
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
8.9
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
8.9
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
8.8
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
8.8
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
8.8
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
8.8
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
8.8
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
8.7
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
8.7
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
8.7
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
8.7
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
8.7
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
8.6
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
8.6
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
8.6
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
8.6
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
8.6
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
8.6
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
8.5
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
8.5
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
8.5
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
8.5
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
8.5
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
8.4
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
8.4
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
8.4
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
8.3
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
8.2
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
8.2
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
8.2
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
8.2
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
8.2
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
8.2
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
8.2
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
8.1
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
8.1
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
8.0
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
8.0
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
8.0
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
8.0
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
8.0
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
8.0
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
7.9
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
7.9
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
7.9
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
7.9
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
7.9
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
7.9
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
7.9
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
7.9
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
7.8
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
7.8
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
7.8
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
7.8
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
7.8
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
7.8
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
7.8
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
7.8
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
7.7
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
7.7
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
7.7
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
7.7
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
7.7
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
7.7
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
7.6
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
7.6
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
7.6
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
7.5
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
7.5
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
7.5
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
7.5
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
7.5
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
7.5
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
7.5
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
7.5
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
7.4
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
7.4
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
7.4
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
7.4
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
7.4
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
7.3
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
7.3
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
7.3
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
7.3
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
7.2
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
7.2
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
7.1
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
7.1
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
7.1
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
7.1
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
7.1
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
7.1
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
7.1
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
7.1
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
7.0
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
6.9
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
6.9
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
6.9
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
6.9
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
6.9
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
6.9
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
6.8
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
6.8
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
6.8
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
6.7
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
6.7
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
6.7
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
6.6
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
6.6
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
6.6
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
6.6
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
6.5
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
6.5
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
6.5
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
6.4
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
6.4
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
6.4
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
6.4
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
6.4
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
6.4
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
6.3
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
6.3
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
6.3
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
6.3
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
6.3
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
6.3
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
6.2
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
6.2
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
6.2
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
6.2
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
6.2
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
6.2
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
6.2
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
6.2
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
6.1
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
6.1
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
6.1
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
6.0
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
6.0
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
5.9
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
5.9
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
5.9
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
5.9
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
5.9
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
5.8
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
5.8
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
5.8
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
5.8
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
5.7
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
5.7
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
5.7
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
5.6
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
5.6
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
5.6
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
5.6
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
5.6
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
5.6
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
5.5
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
5.5
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
5.4
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
5.4
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
5.4
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
5.4
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
5.3
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
5.3
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
5.3
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
5.3
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
5.3
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
5.2
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
5.2
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
5.2
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
5.2
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
5.2
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
5.1
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
5.1
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
5.0
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
5.0
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
5.0
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
5.0
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
4.9
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
4.9
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
4.9
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
4.9
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
4.7
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
4.7
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
4.7
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
4.6
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
4.6
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
4.5
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
4.5
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
4.4
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
4.4
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
4.4
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
4.3
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
4.3
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
4.3
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
4.3
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
4.2
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
4.2
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
4.2
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
4.2
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
4.1
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
4.1
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
4.0
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
4.0
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
3.9
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
3.9
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
3.9
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
3.8
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
3.8
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
3.7
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
3.7
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
3.6
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
3.5
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
3.5
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
3.5
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
3.5
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
3.4
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
3.4
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
3.3
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
3.3
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
3.3
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
3.3
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
3.1
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
3.1
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
3.0
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
3.0
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
2.9
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
2.9
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
2.8
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
2.7
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
2.6
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
2.6
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
2.6
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
2.6
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
2.5
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
2.5
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
2.4
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
2.3
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
2.3
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
2.2
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
2.1
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
1.7
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
1.5
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
1.5
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
1.4
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
1.4
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
1.3
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
1.1
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
0.8
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
0.8
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
OXSM is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
11.2
Number of samples
231
Samples
Sample
Description
TPM
DO50845
0 years, male, NA, stage:3, alive, 210 days
28.3
DO50816
0 years, male, NA, stage:2, alive, 390 days
27.4
DO23532
0 years, female, NA, stage:1, alive, 960 days
25.1
DO48759
0 years, male, NA, stage:3, alive, 720 days
22.2
DO23508
0 years, female, NA, stage:2, alive, 390 days
21.1
DO23548
0 years, female, NA, stage:1, alive, 840 days
21.0
DO45299
0 years, female, NA, stage:1, alive, 1440 days
20.8
DO45161
0 years, male, NA, stage:2, dead, 540 days
20.4
DO23533
0 years, male, NA, stage:2, alive, 900 days
19.2
DO23525
0 years, male, NA, stage:4, alive, 1050 days
19.1
DO50813
0 years, male, NA, stage:2, alive, 420 days
19.1
DO23514
0 years, male, NA, stage:2, alive, 1290 days
19.0
DO45119
0 years, male, NA, stage:3, dead, 510 days
19.0
DO45129
0 years, male, NA, stage:3, alive, 1470 days
17.9
DO45169
0 years, male, NA, stage:3, alive, 1350 days
17.3
DO45145
0 years, male, NA, stage:3, dead, 60 days
16.9
DO45105
0 years, male, NA, stage:1, alive, 1680 days
16.6
DO50806
0 years, male, NA, stage:4, alive, 540 days
16.5
DO45092
0 years, male, NA, stage:4, dead, 1200 days
16.5
DO23513
0 years, male, NA, stage:3, alive, 1200 days
16.4
DO50791
0 years, female, NA, stage:1, dead, 480 days
16.1
DO48719
0 years, male, NA, stage:2, alive, 690 days
16.1
DO50802
0 years, male, NA, stage:2, alive, 930 days
16.0
DO45175
0 years, male, NA, stage:2, alive, 1140 days
15.9
DO50822
0 years, male, NA, stage:2, alive, 510 days
15.8
DO48751
0 years, male, NA, stage:2, dead, 480 days
15.7
DO45107
0 years, female, NA, stage:2, alive, 1710 days
15.7
DO48701
0 years, male, NA, stage:2, alive, 780 days
15.5
DO45097
0 years, male, NA, stage:3, alive, 1620 days
15.4
DO45101
0 years, male, NA, stage:2, alive, 1680 days
15.2
DO23540
0 years, male, NA, stage:1, alive, 750 days
15.2
DO50829
0 years, male, NA, stage:3, alive, 570 days
14.9
DO45241
0 years, male, NA, stage:1, alive, 1080 days
14.8
DO50815
0 years, male, NA, stage:3, alive, 150 days
14.7
DO45195
0 years, male, NA, stage:1, alive, 390 days
14.6
DO45237
0 years, male, NA, stage:2, alive, 900 days
14.6
DO45199
0 years, female, NA, stage:2, alive, 1350 days
14.4
DO48697
0 years, female, NA, stage:2, dead, 810 days
14.3
DO45096
0 years, male, NA, stage:2, dead, 1290 days
14.1
DO48741
0 years, male, NA, stage:3, alive, 240 days
14.0
DO50850
0 years, male, NA, stage:3, alive, 720 days
13.8
DO50832
0 years, male, NA, stage:3, alive, 90 days
13.8
DO45127
0 years, male, NA, stage:3, dead, 420 days
13.8
DO45173
0 years, male, NA, stage:3, alive, 1170 days
13.7
DO23542
0 years, male, NA, stage:3, alive, 960 days
13.7
DO45217
0 years, female, NA, stage:3, dead, 270 days
13.6
DO45215
0 years, male, NA, stage:2, alive, 1170 days
13.6
DO48682
0 years, female, NA, stage:3, dead, 120 days
13.6
DO48700
0 years, female, NA, stage:2, alive, 810 days
13.5
DO45125
0 years, male, NA, stage:3, alive, 1680 days
13.4
DO23528
0 years, female, NA, stage:2, alive, 1020 days
13.4
DO50776
0 years, male, NA, stage:1, alive, 690 days
13.3
DO45167
0 years, male, NA, stage:2, dead, 1440 days
13.3
DO48679
0 years, male, NA, stage:2, alive, 1200 days
13.2
DO48681
0 years, male, NA, stage:2, alive, 900 days
13.2
DO45221
0 years, female, NA, stage:4, dead, 390 days
13.1
DO45257
0 years, male, NA, stage:3, alive, 810 days
13.1
DO45123
0 years, female, NA, stage:2, dead, 570 days
13.0
DO45255
0 years, male, NA, stage:3, alive, 720 days
13.0
DO45149
0 years, female, NA, stage:2, alive, 1260 days
12.9
DO48723
0 years, male, NA, stage:1, alive, 600 days
12.8
DO50808
0 years, male, NA, stage:2, alive, 570 days
12.8
DO227801
0 years, female, NA, stage:1, alive, 660 days
12.8
DO45193
0 years, female, NA, stage:4, dead, 120 days
12.8
DO45269
0 years, male, NA, stage:3, alive, 750 days
12.7
DO45171
0 years, male, NA, stage:3, alive, 600 days
12.6
DO23541
0 years, male, NA, stage:2, alive, 930 days
12.5
DO45094
0 years, male, NA, stage:3, alive, 1650 days
12.4
DO45239
0 years, male, NA, stage:2, alive, 870 days
12.3
DO23512
0 years, male, NA, stage:1, alive, 1260 days
12.3
DO23509
0 years, male, NA, stage:3, dead, 780 days
12.2
DO23510
0 years, female, NA, stage:2, alive, 870 days
12.1
DO45153
0 years, female, NA, stage:2, alive, 1380 days
12.1
DO48715
0 years, female, NA, stage:2, dead, 690 days
12.0
DO23544
0 years, male, NA, stage:2, alive, 960 days
12.0
DO23546
0 years, male, NA, stage:2, alive, 1050 days
12.0
DO45163
0 years, male, NA, stage:2, alive, 960 days
12.0
DO50819
0 years, female, NA, stage:2, alive, 510 days
11.9
DO45165
0 years, male, NA, stage:2, alive, 690 days
11.8
DO23547
0 years, male, NA, stage:1, alive, 1020 days
11.7
DO23545
0 years, male, NA, stage:2, dead, 570 days
11.7
DO23529
0 years, male, NA, stage:4, alive, 930 days
11.6
DO50817
0 years, male, NA, stage:2, alive, 390 days
11.6
DO45131
0 years, male, NA, stage:4, dead, 360 days
11.6
DO48672
0 years, male, NA, stage:2, alive, 450 days
11.5
DO45265
0 years, male, NA, stage:3, alive, 1020 days
11.5
DO23539
0 years, male, NA, stage:1, alive, 1110 days
11.5
DO45117
0 years, female, NA, stage:2, dead, 1110 days
11.5
DO45091
0 years, male, NA, stage:2, dead, 1320 days
11.5
DO48742
0 years, male, NA, stage:2, alive, 600 days
11.5
DO48704
0 years, female, NA, stage:3, alive, 750 days
11.4
DO45301
0 years, male, NA, stage:2, dead, 1440 days
11.4
DO23521
0 years, male, NA, stage:3, alive, 1110 days
11.3
DO45177
0 years, female, NA, stage:3, alive, 1260 days
11.3
DO23534
0 years, male, NA, stage:2, alive, 840 days
11.3
DO23536
0 years, male, NA, stage:2, alive, 930 days
11.3
DO50844
0 years, male, NA, stage:4, alive, 300 days
11.2
DO45281
0 years, male, NA, stage:4, alive, 750 days
11.2
DO50783
0 years, male, NA, stage:3, alive, 480 days
11.2
DO48695
0 years, male, NA, stage:2, alive, 720 days
11.1
DO45267
0 years, male, NA, stage:3, dead, 570 days
11.1
DO45275
0 years, male, NA, stage:3, dead, 10 days
11.0
DO50814
0 years, male, NA, stage:3, alive, 420 days
11.0
DO50774
0 years, female, NA, stage:2, alive, 720 days
11.0
DO48677
0 years, male, NA, stage:3, alive, 1140 days
10.9
DO48732
0 years, male, NA, stage:3, alive, 630 days
10.9
DO45273
0 years, male, NA, stage:2, alive, 480 days
10.9
DO45253
0 years, male, NA, stage:2, alive, 870 days
10.9
DO23527
0 years, male, NA, stage:1, alive, 1050 days
10.8
DO50809
0 years, male, NA, stage:3, dead, 720 days
10.8
DO45185
0 years, male, NA, stage:2, alive, 600 days
10.7
DO50804
0 years, male, NA, stage:2, alive, 720 days
10.7
DO48716
0 years, male, NA, stage:2, alive, 720 days
10.7
DO45155
0 years, male, NA, stage:2, alive, 2160 days
10.7
DO45197
0 years, male, NA, stage:2, alive, 1170 days
10.6
DO45235
0 years, female, NA, stage:1, alive, 900 days
10.6
DO50840
0 years, male, NA, stage:2, alive, 330 days
10.5
DO48747
0 years, male, NA, stage:3, alive, 540 days
10.5
DO45261
0 years, male, NA, stage:3, alive, 990 days
10.5
DO227643
0 years, male, NA, stage:2, alive, 1260 days
10.4
DO45141
0 years, male, NA, stage:2, alive, 1320 days
10.4
DO23518
0 years, male, NA, stage:2, alive, 1320 days
10.3
DO45209
0 years, male, NA, stage:4, alive, 1350 days
10.3
DO23515
0 years, male, NA, stage:2, alive, 1230 days
10.3
DO23538
0 years, male, NA, stage:2, alive, 450 days
10.3
DO48760
0 years, female, NA, stage:2, alive, 690 days
10.2
DO45109
0 years, male, NA, stage:2, alive, 1590 days
10.2
DO48721
0 years, female, NA, stage:1, alive, 900 days
10.2
DO45139
0 years, male, NA, stage:3, alive, 1320 days
10.2
DO45223
0 years, male, NA, stage:4, alive, 1020 days
10.2
DO45183
0 years, female, NA, stage:2, dead, 570 days
10.1
DO45133
0 years, male, NA, stage:3, dead, 660 days
10.1
DO45179
0 years, female, NA, stage:2, alive, 600 days
10.1
DO48717
0 years, male, NA, stage:4, dead, 180 days
10.1
DO23551
0 years, male, NA, stage:3, dead, 150 days
10.0
DO50799
0 years, female, NA, stage:2, alive, 540 days
10.0
DO45115
0 years, male, NA, stage:2, alive, 840 days
10.0
DO23552
0 years, female, NA, stage:1, alive, 810 days
9.9
DO48693
0 years, male, NA, stage:2, alive, 900 days
9.9
DO23517
0 years, male, NA, stage:2, alive, 1200 days
9.8
DO45159
0 years, male, NA, stage:3, alive, 1470 days
9.7
DO45219
0 years, male, NA, stage:2, alive, 1080 days
9.7
DO50825
0 years, male, NA, stage:2, alive, 390 days
9.7
DO45113
0 years, male, NA, stage:3, alive, 1560 days
9.6
DO50859
0 years, male, NA, stage:2, alive, 180 days
9.6
DO45181
0 years, female, NA, stage:2, alive, 1200 days
9.6
DO48746
0 years, male, NA, stage:3, alive, 570 days
9.6
DO50818
0 years, male, NA, stage:2, alive, 510 days
9.6
DO48674
0 years, male, NA, stage:2, alive, 1260 days
9.6
DO48706
0 years, male, NA, stage:2, alive, 870 days
9.6
DO45135
0 years, male, NA, stage:1, alive, 1410 days
9.5
DO23524
0 years, female, NA, stage:2, alive, 1050 days
9.5
DO23531
0 years, female, NA, stage:3, alive, 900 days
9.5
DO45143
0 years, male, NA, stage:3, alive, 1290 days
9.4
DO45205
0 years, female, NA, stage:2, dead, 90 days
9.4
DO45103
0 years, male, NA, stage:3, alive, 450 days
9.3
DO23519
0 years, male, NA, stage:3, alive, 630 days
9.3
DO45249
0 years, male, NA, stage:1, alive, 630 days
9.2
DO45231
0 years, male, NA, stage:2, alive, 930 days
9.2
DO48737
0 years, male, NA, stage:1, alive, 720 days
9.2
DO50805
0 years, male, NA, stage:2, alive, 690 days
9.2
DO48725
0 years, male, NA, stage:1, alive, 780 days
9.2
DO23550
0 years, male, NA, stage:1, alive, 990 days
9.2
DO45297
0 years, female, NA, stage:4, dead, 1260 days
9.0
DO45203
0 years, female, NA, stage:2, alive, 1170 days
9.0
DO50811
0 years, male, NA, stage:1, alive, 450 days
9.0
DO45095
0 years, male, NA, stage:2, alive, 1620 days
8.8
DO45157
0 years, male, NA, stage:2, alive, 1980 days
8.8
DO50855
0 years, male, NA, stage:2, alive, 570 days
8.8
DO45225
0 years, male, NA, stage:1, alive, 1050 days
8.8
DO50803
0 years, female, NA, stage:1, alive, 540 days
8.7
DO48727
0 years, female, NA, stage:2, dead, 390 days
8.7
DO45303
0 years, female, NA, stage:3, alive, 990 days
8.7
DO23511
0 years, female, NA, stage:3, dead, 180 days
8.7
DO50785
0 years, male, NA, stage:4, dead, 90 days
8.7
DO48743
0 years, female, NA, stage:2, alive, 570 days
8.6
DO45247
0 years, female, NA, stage:2, alive, 210 days
8.6
DO45227
0 years, female, NA, stage:2, alive, 1020 days
8.6
DO50800
0 years, male, NA, stage:2, alive, 510 days
8.5
DO45289
0 years, female, NA, stage:3, alive, 360 days
8.5
DO23516
0 years, male, NA, stage:3, dead, 20 days
8.4
DO48730
0 years, female, NA, stage:2, alive, 630 days
8.3
DO45207
0 years, male, NA, stage:1, alive, 1050 days
8.3
DO45137
0 years, male, NA, stage:1, alive, 1320 days
8.3
DO23543
0 years, male, NA, stage:2, alive, 1020 days
8.3
DO50789
0 years, female, NA, stage:2, alive, 570 days
8.3
DO45111
0 years, male, NA, stage:2, alive, 1590 days
8.2
DO48712
0 years, male, NA, stage:2, alive, 810 days
8.1
DO45307
0 years, female, NA, stage:4, dead, 240 days
8.1
DO23549
0 years, male, NA, stage:3, alive, 990 days
8.1
DO48761
0 years, male, NA, stage:2, alive, 870 days
8.0
DO50798
0 years, male, NA, stage:3, dead, 30 days
7.9
DO45191
0 years, female, NA, stage:2, alive, 1200 days
7.9
DO45201
0 years, male, NA, stage:1, alive, 900 days
7.9
DO45229
0 years, male, NA, stage:1, alive, 990 days
7.8
DO48720
0 years, female, NA, stage:2, alive, 570 days
7.8
DO45285
0 years, male, NA, stage:3, alive, 480 days
7.8
DO48736
0 years, female, NA, stage:1, alive, 600 days
7.8
DO48757
0 years, female, NA, stage:3, alive, 480 days
7.7
DO48733
0 years, male, NA, stage:2, alive, 600 days
7.7
DO45189
0 years, female, NA, stage:2, alive, 1200 days
7.6
DO23537
0 years, male, NA, stage:2, dead, 900 days
7.6
DO50793
0 years, male, NA, stage:4, alive, 540 days
7.6
DO23535
0 years, male, NA, stage:1, alive, 960 days
7.5
DO23526
0 years, male, NA, stage:3, alive, 1050 days
7.4
DO23523
0 years, male, NA, stage:3, alive, 1080 days
7.3
DO50857
0 years, male, NA, stage:2, alive, 210 days
7.2
DO45121
0 years, male, NA, stage:3, alive, 1530 days
7.2
DO45211
0 years, male, NA, stage:3, alive, 240 days
7.2
DO45233
0 years, male, NA, stage:3, alive, 900 days
7.2
DO50820
0 years, female, NA, stage:3, alive, 510 days
7.1
DO45187
0 years, female, NA, stage:1, alive, 1260 days
7.1
DO45287
0 years, male, NA, stage:1, alive, 390 days
7.0
DO45251
0 years, female, NA, stage:2, alive, 900 days
6.9
DO45093
0 years, male, NA, stage:2, dead, 720 days
6.9
DO45259
0 years, male, NA, stage:3, alive, 330 days
6.9
DO50787
0 years, male, NA, stage:3, alive, 480 days
6.9
DO45213
0 years, male, NA, stage:1, alive, 1200 days
6.7
DO45243
0 years, female, NA, stage:3, alive, 930 days
6.6
DO50807
0 years, male, NA, stage:1, alive, 540 days
6.3
DO45277
0 years, male, NA, stage:3, alive, 600 days
6.3
DO45099
0 years, male, NA, stage:3, alive, 1590 days
6.2
DO45279
0 years, male, NA, stage:3, alive, 1290 days
6.2
DO50778
0 years, male, NA, stage:4, alive, 630 days
6.2
DO45305
0 years, male, NA, stage:4, alive, 300 days
6.1
DO45245
0 years, female, NA, stage:2, dead, 240 days
5.8
DO48728
0 years, female, NA, stage:2, alive, 150 days
5.5
DO45283
0 years, male, NA, stage:3, alive, 510 days
5.4
DO23530
0 years, male, NA, stage:4, dead, 180 days
4.7
DO50839
0 years, female, NA, stage:3, alive, 330 days
4.7
DO45263
0 years, male, NA, stage:3, dead, 270 days
4.6
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
925
Tumor
1.1
1041
Tumor
1.0
627
Tumor
1.0
452
Normal
0.7
915
Tumor
0.7
227
Tumor
0.7
145
Tumor
0.6
922
Normal
0.5
465
Tumor
0.5
358
Normal
0.5
128
Normal
0.5
172
Normal
0.5
462
Normal
0.5
636
Normal
0.5
361
Tumor
0.5
615
Tumor
0.5
911
Tumor
0.5
568
Normal
0.5
924
Normal
0.5
564
Normal
0.4
278
Normal
0.4
388
Normal
0.4
132
Normal
0.4
426
Normal
0.4
186
Normal
0.4
114
Normal
0.4
755
Tumor
0.4
393
Tumor
0.4
862
Normal
0.4
394
Normal
0.4
422
Normal
0.4
944
Normal
0.4
113
Tumor
0.4
314
Normal
0.4
414
Normal
0.4
137
Tumor
0.4
342
Normal
0.4
376
Normal
0.4
468
Normal
0.4
1043
Tumor
0.4
618
Normal
0.4
232
Normal
0.4
648
Normal
0.4
746
Normal
0.4
464
Normal
0.4
428
Normal
0.4
723
Tumor
0.4
572
Normal
0.4
354
Normal
0.4
1032
Normal
0.4
344
Normal
0.4
436
Normal
0.4
356
Normal
0.4
567
Tumor
0.4
756
Normal
0.4
392
Normal
0.4
214
Normal
0.4
368
Normal
0.4
466
Normal
0.4
162
Normal
0.3
937
Tumor
0.3
513
Tumor
0.3
868
Normal
0.3
914
Normal
0.3
534
Normal
0.3
1014
Normal
0.3
446
Normal
0.3
1022
Normal
0.3
742
Normal
0.3
298
Normal
0.3
955
Tumor
0.3
738
Normal
0.3
546
Normal
0.3
432
Normal
0.3
786
Normal
0.3
722
Normal
0.3
148
Normal
0.3
124
Normal
0.3
824
Normal
0.3
616
Normal
0.3
926
Normal
0.3
952
Normal
0.3
858
Normal
0.3
563
Tumor
0.3
664
Normal
0.3
138
Normal
0.3
332
Normal
0.3
866
Normal
0.3
424
Normal
0.3
984
Normal
0.3
642
Normal
0.3
874
Normal
0.3
526
Normal
0.3
554
Normal
0.3
412
Normal
0.3
698
Normal
0.3
111
Normal
0.3
396
Normal
0.3
1028
Normal
0.3
912
Normal
0.3
196
Normal
0.3
1045
Tumor
0.3
864
Normal
0.3
142
Normal
0.3
728
Normal
0.3
352
Normal
0.3
364
Normal
0.3
218
Normal
0.3
484
Normal
0.3
312
Normal
0.3
423
Tumor
0.3
366
Normal
0.3
1016
Normal
0.2
938
Normal
0.2
818
Normal
0.2
721
Tumor
0.2
954
Normal
0.2
258
Normal
0.2
416
Normal
0.2
968
Normal
0.2
482
Normal
0.2
628
Normal
0.2
456
Normal
0.2
191
Tumor
0.2
514
Normal
0.2
982
Normal
0.2
1026
Normal
0.2
488
Normal
0.2
146
Normal
0.2
328
Normal
0.2
1042
Normal
0.2
528
Normal
0.2
448
Normal
0.2
976
Normal
0.2
327
Tumor
0.2
918
Normal
0.2
741
Tumor
0.2
228
Normal
0.2
574
Normal
0.2
363
Tumor
0.2
696
Normal
0.2
665
Tumor
0.2
286
Normal
0.2
878
Normal
0.2
816
Normal
0.2
662
Normal
0.2
472
Normal
0.2
126
Normal
0.2
778
Normal
0.2
744
Normal
0.2
713
Tumor
0.2
262
Normal
0.2
451
Tumor
0.2
1015
Tumor
0.2
558
Normal
0.2
884
Normal
0.2
195
Tumor
0.2
136
Normal
0.2
387
Tumor
0.2
666
Normal
0.2
964
Normal
0.2
978
Normal
0.2
851
Tumor
0.2
494
Normal
0.2
916
Normal
0.2
518
Normal
0.2
477
Tumor
0.1
474
Normal
0.1
1046
Normal
0.1
284
Normal
0.1
386
Normal
0.1
852
Normal
0.1
873
Tumor
0.1
127
Tumor
0.1
882
Normal
0.1
272
Normal
0.1
538
Normal
0.1
745
Tumor
0.1
362
Normal
0.1
714
Normal
0.1
857
Tumor
0.1
956
Normal
0.1
686
Normal
0.1
411
Tumor
0.1
434
Normal
0.1
672
Normal
0.1
384
Normal
0.1
716
Normal
0.1
516
Normal
0.1
341
Tumor
0.0
212
Normal
0.0
695
Tumor
0.0
188
Normal
0.0
222
Normal
0.0
867
Tumor
0.0
431
Tumor
0.0
715
Tumor
0.0
415
Tumor
0.0
1025
Tumor
0.0
161
Tumor
0.0
966
Normal
0.0
383
Tumor
0.0
487
Tumor
0.0
261
Tumor
0.0
481
Tumor
0.0
958
Normal
0.0
367
Tumor
0.0
435
Tumor
0.0
231
Tumor
0.0
268
Normal
0.0
571
Tumor
-0.1
883
Tumor
-0.1
123
Tumor
-0.1
224
Normal
-0.1
443
Tumor
-0.1
141
Tumor
-0.1
957
Tumor
-0.1
444
Normal
-0.1
981
Tumor
-0.1
427
Tumor
-0.1
187
Tumor
-0.1
461
Tumor
-0.1
112
Tumor
-0.1
171
Tumor
-0.1
267
Tumor
-0.1
365
Tumor
-0.1
1044
Normal
-0.1
524
Normal
-0.1
478
Normal
-0.1
421
Tumor
-0.2
353
Tumor
-0.2
535
Tumor
-0.2
861
Tumor
-0.2
492
Normal
-0.2
483
Tumor
-0.2
823
Tumor
-0.2
351
Tumor
-0.2
498
Normal
-0.2
785
Tumor
-0.2
135
Tumor
-0.2
217
Tumor
-0.2
573
Tumor
-0.2
257
Tumor
-0.2
192
Normal
-0.2
557
Tumor
-0.2
536
Normal
-0.2
391
Tumor
-0.3
185
Tumor
-0.3
473
Tumor
-0.3
617
Tumor
-0.3
553
Tumor
-0.3
913
Tumor
-0.3
395
Tumor
-0.3
433
Tumor
-0.3
515
Tumor
-0.3
647
Tumor
-0.3
863
Tumor
-0.3
537
Tumor
-0.3
525
Tumor
-0.3
953
Tumor
-0.3
865
Tumor
-0.3
445
Tumor
-0.4
1031
Tumor
-0.4
357
Tumor
-0.4
223
Tumor
-0.4
221
Tumor
-0.4
533
Tumor
-0.4
815
Tumor
-0.4
727
Tumor
-0.5
814
Normal
-0.5
743
Tumor
-0.5
297
Tumor
-0.5
285
Tumor
-0.5
467
Tumor
-0.5
641
Tumor
-0.5
471
Tumor
-0.5
965
Tumor
-0.5
881
Tumor
-0.5
517
Tumor
-0.5
331
Tumor
-0.5
724
Normal
-0.5
491
Tumor
-0.5
147
Tumor
-0.6
951
Tumor
-0.6
375
Tumor
-0.6
313
Tumor
-0.6
213
Tumor
-0.6
131
Tumor
-0.6
977
Tumor
-0.6
413
Tumor
-0.6
635
Tumor
-0.6
685
Tumor
-0.6
921
Tumor
-0.6
975
Tumor
-0.7
663
Tumor
-0.7
777
Tumor
-0.7
125
Tumor
-0.7
1027
Tumor
-0.7
923
Tumor
-0.7
271
Tumor
-0.7
1021
Tumor
-0.7
943
Tumor
-0.7
523
Tumor
-0.7
1013
Tumor
-0.7
447
Tumor
-0.7
813
Tumor
-0.8
877
Tumor
-0.8
963
Tumor
-0.8
355
Tumor
-0.8
277
Tumor
-0.8
983
Tumor
-0.8
671
Tumor
-0.8
385
Tumor
-0.8
527
Tumor
-0.8
697
Tumor
-0.8
737
Tumor
-0.8
917
Tumor
-0.8
425
Tumor
-0.9
311
Tumor
-0.9
343
Tumor
-0.9
817
Tumor
-0.9
463
Tumor
-0.9
211
Tumor
-1.0
455
Tumor
-1.0
497
Tumor
-1.0
967
Tumor
-1.1
493
Tumor
-1.1
283
Tumor
-1.1
545
Tumor
-1.1
661
Tumor
-1.2
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
