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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PIP4K2A is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
5.7
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
33.3
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
32.7
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
29.1
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
23.7
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
22.7
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
21.3
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
20.5
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
19.0
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
18.2
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
17.6
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
17.3
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
15.9
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
15.6
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
15.5
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
15.1
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
14.7
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
14.5
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
14.5
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
13.2
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
13.2
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
13.1
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
12.6
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
12.4
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
11.9
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
11.9
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
11.8
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
11.8
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
11.5
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
11.4
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
11.1
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
11.0
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
10.9
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
10.8
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
10.8
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
10.7
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
10.6
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
10.5
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
10.5
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
9.9
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
9.9
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
9.9
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
9.7
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
9.6
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
9.6
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
9.5
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
9.5
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
9.3
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
9.3
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
9.2
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
9.1
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
9.1
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
9.0
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
9.0
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
8.6
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
8.5
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
8.5
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
8.5
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
8.4
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
8.4
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
8.3
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
8.3
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
8.2
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
8.2
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
8.1
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
8.0
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
8.0
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
8.0
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
8.0
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
8.0
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
7.9
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
7.9
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
7.8
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
7.8
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
7.8
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
7.8
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
7.8
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
7.8
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
7.7
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
7.7
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
7.7
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
7.6
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
7.6
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
7.5
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
7.5
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
7.5
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
7.4
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
7.4
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
7.3
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
7.3
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
7.2
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
7.2
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
7.2
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
7.1
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
7.1
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
7.1
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
6.9
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
6.9
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
6.9
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
6.9
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
6.8
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
6.8
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
6.8
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
6.7
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
6.6
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
6.6
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
6.5
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
6.5
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
6.5
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
6.4
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
6.4
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
6.4
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
6.3
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
6.3
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
6.2
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
6.2
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
6.2
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
6.2
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
6.2
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
6.2
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
6.2
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
6.1
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
6.1
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
6.1
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
6.1
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
6.0
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
6.0
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
5.9
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
5.9
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
5.8
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
5.8
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
5.8
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
5.8
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
5.8
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
5.7
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
5.7
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
5.7
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
5.7
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
5.6
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
5.6
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
5.5
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
5.5
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
5.5
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
5.5
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
5.5
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
5.4
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
5.4
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
5.4
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
5.4
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
5.4
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
5.3
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
5.3
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
5.3
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
5.3
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
5.3
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
5.2
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
5.2
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
5.2
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
5.2
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
5.2
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
5.2
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
5.2
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
5.2
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
5.1
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
5.0
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
5.0
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
5.0
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
4.9
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
4.9
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
4.9
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
4.9
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
4.9
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
4.9
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
4.8
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
4.8
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
4.7
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
4.7
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
4.7
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
4.7
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
4.7
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
4.7
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
4.7
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
4.6
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
4.6
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
4.6
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
4.6
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
4.6
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
4.6
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
4.5
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
4.5
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
4.5
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
4.5
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
4.5
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
4.4
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
4.4
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
4.4
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
4.4
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
4.3
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
4.3
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
4.3
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
4.3
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
4.2
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
4.2
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
4.2
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
4.2
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
4.2
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
4.2
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
4.2
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
4.1
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
4.1
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
4.1
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
4.1
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
4.1
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
4.1
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
4.1
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
4.0
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
4.0
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
4.0
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
4.0
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
3.9
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
3.9
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
3.8
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
3.8
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
3.7
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
3.7
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
3.7
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
3.7
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
3.7
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
3.7
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
3.7
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
3.7
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
3.7
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
3.6
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
3.6
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
3.6
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
3.6
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
3.5
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
3.5
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
3.5
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
3.5
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
3.5
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
3.5
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
3.5
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
3.4
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
3.4
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
3.4
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
3.4
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
3.4
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
3.4
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
3.4
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
3.4
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
3.4
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
3.3
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
3.3
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
3.3
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
3.3
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
3.3
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
3.2
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
3.2
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
3.2
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
3.2
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
3.1
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
3.1
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
3.1
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
3.1
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
3.1
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
3.1
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
3.0
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
3.0
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
3.0
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
3.0
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
3.0
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
3.0
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
3.0
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
3.0
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
3.0
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
2.9
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
2.9
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
2.9
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
2.9
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
2.9
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
2.9
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
2.9
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
2.9
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
2.9
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
2.9
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
2.9
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
2.8
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
2.8
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
2.8
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
2.8
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
2.8
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
2.8
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
2.7
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
2.7
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
2.7
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
2.6
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
2.6
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
2.5
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
2.5
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
2.5
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
2.5
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
2.5
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
2.5
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
2.5
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
2.5
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
2.4
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
2.4
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
2.4
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
2.4
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
2.3
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
2.3
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
2.3
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
2.3
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
2.3
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
2.2
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
2.2
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
2.2
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
2.2
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
2.2
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
2.2
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
2.2
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
2.2
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
2.2
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
2.2
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
2.2
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
2.1
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
2.1
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
2.1
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
2.0
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
2.0
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
2.0
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
2.0
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
1.9
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
1.8
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
1.8
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
1.8
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
1.8
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
1.8
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
1.8
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
1.7
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
1.7
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
1.7
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
1.6
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
1.6
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
1.5
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
1.5
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
1.5
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
1.5
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
1.5
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
1.4
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
1.4
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
1.4
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
1.4
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
1.4
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
1.3
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
1.3
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
1.2
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
1.2
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
1.1
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
1.1
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
1.0
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PIP4K2A is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
7.6
Number of samples
231
Samples
Sample
Description
TPM
DO23523
0 years, male, NA, stage:3, alive, 1080 days
35.4
DO23530
0 years, male, NA, stage:4, dead, 180 days
24.0
DO23547
0 years, male, NA, stage:1, alive, 1020 days
23.2
DO45155
0 years, male, NA, stage:2, alive, 2160 days
22.9
DO45141
0 years, male, NA, stage:2, alive, 1320 days
21.6
DO45307
0 years, female, NA, stage:4, dead, 240 days
20.9
DO45287
0 years, male, NA, stage:1, alive, 390 days
20.9
DO50829
0 years, male, NA, stage:3, alive, 570 days
19.3
DO48747
0 years, male, NA, stage:3, alive, 540 days
19.3
DO45275
0 years, male, NA, stage:3, dead, 10 days
18.7
DO45277
0 years, male, NA, stage:3, alive, 600 days
18.7
DO48720
0 years, female, NA, stage:2, alive, 570 days
18.5
DO45205
0 years, female, NA, stage:2, dead, 90 days
18.2
DO23526
0 years, male, NA, stage:3, alive, 1050 days
18.2
DO48728
0 years, female, NA, stage:2, alive, 150 days
16.8
DO45139
0 years, male, NA, stage:3, alive, 1320 days
15.8
DO48697
0 years, female, NA, stage:2, dead, 810 days
15.5
DO45217
0 years, female, NA, stage:3, dead, 270 days
14.8
DO50803
0 years, female, NA, stage:1, alive, 540 days
14.2
DO45297
0 years, female, NA, stage:4, dead, 1260 days
13.8
DO50778
0 years, male, NA, stage:4, alive, 630 days
13.7
DO23535
0 years, male, NA, stage:1, alive, 960 days
13.1
DO23549
0 years, male, NA, stage:3, alive, 990 days
13.0
DO50819
0 years, female, NA, stage:2, alive, 510 days
12.9
DO45119
0 years, male, NA, stage:3, dead, 510 days
12.7
DO45135
0 years, male, NA, stage:1, alive, 1410 days
12.7
DO45249
0 years, male, NA, stage:1, alive, 630 days
12.7
DO45267
0 years, male, NA, stage:3, dead, 570 days
12.5
DO45095
0 years, male, NA, stage:2, alive, 1620 days
12.3
DO50815
0 years, male, NA, stage:3, alive, 150 days
12.3
DO45157
0 years, male, NA, stage:2, alive, 1980 days
11.9
DO23546
0 years, male, NA, stage:2, alive, 1050 days
11.8
DO50791
0 years, female, NA, stage:1, dead, 480 days
11.8
DO50800
0 years, male, NA, stage:2, alive, 510 days
11.8
DO23513
0 years, male, NA, stage:3, alive, 1200 days
11.6
DO48736
0 years, female, NA, stage:1, alive, 600 days
11.6
DO45265
0 years, male, NA, stage:3, alive, 1020 days
11.5
DO48733
0 years, male, NA, stage:2, alive, 600 days
11.5
DO23508
0 years, female, NA, stage:2, alive, 390 days
11.5
DO48700
0 years, female, NA, stage:2, alive, 810 days
11.3
DO45145
0 years, male, NA, stage:3, dead, 60 days
11.3
DO50799
0 years, female, NA, stage:2, alive, 540 days
11.1
DO45279
0 years, male, NA, stage:3, alive, 1290 days
11.1
DO45209
0 years, male, NA, stage:4, alive, 1350 days
10.9
DO45273
0 years, male, NA, stage:2, alive, 480 days
10.8
DO45283
0 years, male, NA, stage:3, alive, 510 days
10.6
DO48730
0 years, female, NA, stage:2, alive, 630 days
10.5
DO23524
0 years, female, NA, stage:2, alive, 1050 days
10.5
DO23521
0 years, male, NA, stage:3, alive, 1110 days
10.4
DO23519
0 years, male, NA, stage:3, alive, 630 days
10.3
DO50787
0 years, male, NA, stage:3, alive, 480 days
10.3
DO45159
0 years, male, NA, stage:3, alive, 1470 days
10.2
DO48717
0 years, male, NA, stage:4, dead, 180 days
10.2
DO45251
0 years, female, NA, stage:2, alive, 900 days
10.0
DO45121
0 years, male, NA, stage:3, alive, 1530 days
9.9
DO45233
0 years, male, NA, stage:3, alive, 900 days
9.8
DO45231
0 years, male, NA, stage:2, alive, 930 days
9.6
DO45181
0 years, female, NA, stage:2, alive, 1200 days
9.5
DO23551
0 years, male, NA, stage:3, dead, 150 days
9.4
DO48704
0 years, female, NA, stage:3, alive, 750 days
9.2
DO45263
0 years, male, NA, stage:3, dead, 270 days
9.0
DO48725
0 years, male, NA, stage:1, alive, 780 days
9.0
DO45171
0 years, male, NA, stage:3, alive, 600 days
8.9
DO45092
0 years, male, NA, stage:4, dead, 1200 days
8.9
DO45203
0 years, female, NA, stage:2, alive, 1170 days
8.8
DO50809
0 years, male, NA, stage:3, dead, 720 days
8.8
DO45289
0 years, female, NA, stage:3, alive, 360 days
8.8
DO48741
0 years, male, NA, stage:3, alive, 240 days
8.8
DO45185
0 years, male, NA, stage:2, alive, 600 days
8.8
DO23537
0 years, male, NA, stage:2, dead, 900 days
8.7
DO48743
0 years, female, NA, stage:2, alive, 570 days
8.7
DO50774
0 years, female, NA, stage:2, alive, 720 days
8.6
DO23531
0 years, female, NA, stage:3, alive, 900 days
8.6
DO45103
0 years, male, NA, stage:3, alive, 450 days
8.5
DO45223
0 years, male, NA, stage:4, alive, 1020 days
8.5
DO45255
0 years, male, NA, stage:3, alive, 720 days
8.5
DO23514
0 years, male, NA, stage:2, alive, 1290 days
8.4
DO45229
0 years, male, NA, stage:1, alive, 990 days
8.3
DO48712
0 years, male, NA, stage:2, alive, 810 days
8.2
DO50855
0 years, male, NA, stage:2, alive, 570 days
8.1
DO50820
0 years, female, NA, stage:3, alive, 510 days
8.1
DO45161
0 years, male, NA, stage:2, dead, 540 days
8.1
DO45153
0 years, female, NA, stage:2, alive, 1380 days
8.0
DO45239
0 years, male, NA, stage:2, alive, 870 days
8.0
DO45177
0 years, female, NA, stage:3, alive, 1260 days
8.0
DO45243
0 years, female, NA, stage:3, alive, 930 days
7.9
DO23542
0 years, male, NA, stage:3, alive, 960 days
7.9
DO50808
0 years, male, NA, stage:2, alive, 570 days
7.9
DO50805
0 years, male, NA, stage:2, alive, 690 days
7.9
DO227801
0 years, female, NA, stage:1, alive, 660 days
7.8
DO45301
0 years, male, NA, stage:2, dead, 1440 days
7.8
DO45213
0 years, male, NA, stage:1, alive, 1200 days
7.8
DO45149
0 years, female, NA, stage:2, alive, 1260 days
7.7
DO45253
0 years, male, NA, stage:2, alive, 870 days
7.7
DO45093
0 years, male, NA, stage:2, dead, 720 days
7.7
DO45109
0 years, male, NA, stage:2, alive, 1590 days
7.5
DO45225
0 years, male, NA, stage:1, alive, 1050 days
7.5
DO45269
0 years, male, NA, stage:3, alive, 750 days
7.5
DO45131
0 years, male, NA, stage:4, dead, 360 days
7.5
DO45207
0 years, male, NA, stage:1, alive, 1050 days
7.5
DO45247
0 years, female, NA, stage:2, alive, 210 days
7.5
DO45235
0 years, female, NA, stage:1, alive, 900 days
7.5
DO48693
0 years, male, NA, stage:2, alive, 900 days
7.4
DO45257
0 years, male, NA, stage:3, alive, 810 days
7.3
DO45261
0 years, male, NA, stage:3, alive, 990 days
7.3
DO45143
0 years, male, NA, stage:3, alive, 1290 days
7.3
DO45245
0 years, female, NA, stage:2, dead, 240 days
7.2
DO23515
0 years, male, NA, stage:2, alive, 1230 days
7.1
DO23510
0 years, female, NA, stage:2, alive, 870 days
7.0
DO45299
0 years, female, NA, stage:1, alive, 1440 days
7.0
DO48732
0 years, male, NA, stage:3, alive, 630 days
7.0
DO45285
0 years, male, NA, stage:3, alive, 480 days
6.9
DO45105
0 years, male, NA, stage:1, alive, 1680 days
6.9
DO45241
0 years, male, NA, stage:1, alive, 1080 days
6.9
DO45183
0 years, female, NA, stage:2, dead, 570 days
6.8
DO50798
0 years, male, NA, stage:3, dead, 30 days
6.8
DO48706
0 years, male, NA, stage:2, alive, 870 days
6.8
DO50806
0 years, male, NA, stage:4, alive, 540 days
6.8
DO48715
0 years, female, NA, stage:2, dead, 690 days
6.8
DO45303
0 years, female, NA, stage:3, alive, 990 days
6.7
DO45201
0 years, male, NA, stage:1, alive, 900 days
6.7
DO23541
0 years, male, NA, stage:2, alive, 930 days
6.7
DO45165
0 years, male, NA, stage:2, alive, 690 days
6.6
DO45115
0 years, male, NA, stage:2, alive, 840 days
6.5
DO45187
0 years, female, NA, stage:1, alive, 1260 days
6.5
DO48701
0 years, male, NA, stage:2, alive, 780 days
6.4
DO23544
0 years, male, NA, stage:2, alive, 960 days
6.4
DO45219
0 years, male, NA, stage:2, alive, 1080 days
6.3
DO45191
0 years, female, NA, stage:2, alive, 1200 days
6.2
DO50850
0 years, male, NA, stage:3, alive, 720 days
6.2
DO48760
0 years, female, NA, stage:2, alive, 690 days
6.2
DO23550
0 years, male, NA, stage:1, alive, 990 days
6.2
DO45197
0 years, male, NA, stage:2, alive, 1170 days
6.1
DO50776
0 years, male, NA, stage:1, alive, 690 days
6.0
DO23512
0 years, male, NA, stage:1, alive, 1260 days
5.9
DO23528
0 years, female, NA, stage:2, alive, 1020 days
5.9
DO50785
0 years, male, NA, stage:4, dead, 90 days
5.9
DO48716
0 years, male, NA, stage:2, alive, 720 days
5.8
DO48737
0 years, male, NA, stage:1, alive, 720 days
5.8
DO45099
0 years, male, NA, stage:3, alive, 1590 days
5.8
DO45173
0 years, male, NA, stage:3, alive, 1170 days
5.8
DO50845
0 years, male, NA, stage:3, alive, 210 days
5.7
DO23543
0 years, male, NA, stage:2, alive, 1020 days
5.7
DO45094
0 years, male, NA, stage:3, alive, 1650 days
5.6
DO45305
0 years, male, NA, stage:4, alive, 300 days
5.6
DO45237
0 years, male, NA, stage:2, alive, 900 days
5.6
DO45137
0 years, male, NA, stage:1, alive, 1320 days
5.6
DO48761
0 years, male, NA, stage:2, alive, 870 days
5.5
DO45167
0 years, male, NA, stage:2, dead, 1440 days
5.5
DO45259
0 years, male, NA, stage:3, alive, 330 days
5.4
DO23527
0 years, male, NA, stage:1, alive, 1050 days
5.4
DO48682
0 years, female, NA, stage:3, dead, 120 days
5.2
DO45215
0 years, male, NA, stage:2, alive, 1170 days
5.2
DO45101
0 years, male, NA, stage:2, alive, 1680 days
5.2
DO23509
0 years, male, NA, stage:3, dead, 780 days
5.2
DO45193
0 years, female, NA, stage:4, dead, 120 days
5.0
DO45281
0 years, male, NA, stage:4, alive, 750 days
5.0
DO45127
0 years, male, NA, stage:3, dead, 420 days
5.0
DO50793
0 years, male, NA, stage:4, alive, 540 days
5.0
DO48695
0 years, male, NA, stage:2, alive, 720 days
4.9
DO48742
0 years, male, NA, stage:2, alive, 600 days
4.8
DO45195
0 years, male, NA, stage:1, alive, 390 days
4.7
DO45113
0 years, male, NA, stage:3, alive, 1560 days
4.7
DO45133
0 years, male, NA, stage:3, dead, 660 days
4.6
DO23525
0 years, male, NA, stage:4, alive, 1050 days
4.5
DO50816
0 years, male, NA, stage:2, alive, 390 days
4.5
DO50818
0 years, male, NA, stage:2, alive, 510 days
4.5
DO48681
0 years, male, NA, stage:2, alive, 900 days
4.5
DO48759
0 years, male, NA, stage:3, alive, 720 days
4.5
DO23536
0 years, male, NA, stage:2, alive, 930 days
4.4
DO45221
0 years, female, NA, stage:4, dead, 390 days
4.4
DO45189
0 years, female, NA, stage:2, alive, 1200 days
4.3
DO23532
0 years, female, NA, stage:1, alive, 960 days
4.3
DO50832
0 years, male, NA, stage:3, alive, 90 days
4.2
DO23518
0 years, male, NA, stage:2, alive, 1320 days
4.2
DO227643
0 years, male, NA, stage:2, alive, 1260 days
4.1
DO23511
0 years, female, NA, stage:3, dead, 180 days
4.1
DO45179
0 years, female, NA, stage:2, alive, 600 days
4.1
DO23534
0 years, male, NA, stage:2, alive, 840 days
4.1
DO23540
0 years, male, NA, stage:1, alive, 750 days
4.0
DO48672
0 years, male, NA, stage:2, alive, 450 days
4.0
DO50840
0 years, male, NA, stage:2, alive, 330 days
3.9
DO23548
0 years, female, NA, stage:1, alive, 840 days
3.9
DO23533
0 years, male, NA, stage:2, alive, 900 days
3.9
DO48719
0 years, male, NA, stage:2, alive, 690 days
3.8
DO45211
0 years, male, NA, stage:3, alive, 240 days
3.8
DO45169
0 years, male, NA, stage:3, alive, 1350 days
3.7
DO45117
0 years, female, NA, stage:2, dead, 1110 days
3.7
DO50802
0 years, male, NA, stage:2, alive, 930 days
3.7
DO23545
0 years, male, NA, stage:2, dead, 570 days
3.7
DO48679
0 years, male, NA, stage:2, alive, 1200 days
3.6
DO50822
0 years, male, NA, stage:2, alive, 510 days
3.6
DO48721
0 years, female, NA, stage:1, alive, 900 days
3.6
DO45107
0 years, female, NA, stage:2, alive, 1710 days
3.5
DO45123
0 years, female, NA, stage:2, dead, 570 days
3.5
DO45111
0 years, male, NA, stage:2, alive, 1590 days
3.5
DO50813
0 years, male, NA, stage:2, alive, 420 days
3.5
DO50807
0 years, male, NA, stage:1, alive, 540 days
3.5
DO45125
0 years, male, NA, stage:3, alive, 1680 days
3.4
DO50857
0 years, male, NA, stage:2, alive, 210 days
3.4
DO23539
0 years, male, NA, stage:1, alive, 1110 days
3.4
DO23552
0 years, female, NA, stage:1, alive, 810 days
3.4
DO23538
0 years, male, NA, stage:2, alive, 450 days
3.3
DO23529
0 years, male, NA, stage:4, alive, 930 days
3.3
DO45096
0 years, male, NA, stage:2, dead, 1290 days
3.2
DO45227
0 years, female, NA, stage:2, alive, 1020 days
3.1
DO48757
0 years, female, NA, stage:3, alive, 480 days
3.1
DO45199
0 years, female, NA, stage:2, alive, 1350 days
3.0
DO45163
0 years, male, NA, stage:2, alive, 960 days
3.0
DO50789
0 years, female, NA, stage:2, alive, 570 days
2.9
DO50844
0 years, male, NA, stage:4, alive, 300 days
2.8
DO45091
0 years, male, NA, stage:2, dead, 1320 days
2.7
DO50814
0 years, male, NA, stage:3, alive, 420 days
2.7
DO50859
0 years, male, NA, stage:2, alive, 180 days
2.7
DO48674
0 years, male, NA, stage:2, alive, 1260 days
2.6
DO50825
0 years, male, NA, stage:2, alive, 390 days
2.4
DO23517
0 years, male, NA, stage:2, alive, 1200 days
2.4
DO48751
0 years, male, NA, stage:2, dead, 480 days
2.4
DO48723
0 years, male, NA, stage:1, alive, 600 days
2.3
DO45129
0 years, male, NA, stage:3, alive, 1470 days
2.3
DO48727
0 years, female, NA, stage:2, dead, 390 days
2.2
DO48746
0 years, male, NA, stage:3, alive, 570 days
2.2
DO50804
0 years, male, NA, stage:2, alive, 720 days
2.1
DO50783
0 years, male, NA, stage:3, alive, 480 days
1.9
DO50811
0 years, male, NA, stage:1, alive, 450 days
1.7
DO50817
0 years, male, NA, stage:2, alive, 390 days
1.6
DO23516
0 years, male, NA, stage:3, dead, 20 days
1.4
DO45175
0 years, male, NA, stage:2, alive, 1140 days
1.2
DO50839
0 years, female, NA, stage:3, alive, 330 days
1.2
DO48677
0 years, male, NA, stage:3, alive, 1140 days
0.9
DO45097
0 years, male, NA, stage:3, alive, 1620 days
0.6
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
192
Normal
1.0
536
Normal
0.8
814
Normal
0.8
311
Tumor
0.8
524
Normal
0.7
478
Normal
0.7
492
Normal
0.7
498
Normal
0.7
224
Normal
0.7
434
Normal
0.7
444
Normal
0.6
916
Normal
0.6
813
Tumor
0.6
724
Normal
0.6
917
Tumor
0.5
188
Normal
0.5
538
Normal
0.5
516
Normal
0.5
415
Tumor
0.5
223
Tumor
0.5
721
Tumor
0.5
262
Normal
0.5
384
Normal
0.5
268
Normal
0.5
877
Tumor
0.5
447
Tumor
0.5
943
Tumor
0.5
978
Normal
0.5
126
Normal
0.5
328
Normal
0.5
467
Tumor
0.4
852
Normal
0.4
952
Normal
0.4
211
Tumor
0.4
1013
Tumor
0.4
956
Normal
0.4
146
Normal
0.4
686
Normal
0.4
212
Normal
0.4
976
Normal
0.4
362
Normal
0.4
963
Tumor
0.4
213
Tumor
0.4
716
Normal
0.4
966
Normal
0.4
1042
Normal
0.4
884
Normal
0.4
1027
Tumor
0.4
628
Normal
0.4
816
Normal
0.4
142
Normal
0.3
738
Normal
0.3
366
Normal
0.3
926
Normal
0.3
312
Normal
0.3
778
Normal
0.3
494
Normal
0.3
918
Normal
0.3
386
Normal
0.3
954
Normal
0.3
416
Normal
0.3
558
Normal
0.3
272
Normal
0.3
364
Normal
0.3
421
Tumor
0.3
922
Normal
0.3
1044
Normal
0.3
914
Normal
0.3
185
Tumor
0.3
984
Normal
0.3
818
Normal
0.3
352
Normal
0.3
383
Tumor
0.3
722
Normal
0.3
881
Tumor
0.3
953
Tumor
0.3
863
Tumor
0.3
138
Normal
0.3
424
Normal
0.3
1028
Normal
0.3
744
Normal
0.3
964
Normal
0.3
528
Normal
0.3
924
Normal
0.3
958
Normal
0.3
574
Normal
0.3
874
Normal
0.2
472
Normal
0.2
518
Normal
0.2
514
Normal
0.2
368
Normal
0.2
815
Tumor
0.2
728
Normal
0.2
968
Normal
0.2
284
Normal
0.2
217
Tumor
0.2
563
Tumor
0.2
756
Normal
0.2
483
Tumor
0.2
488
Normal
0.2
218
Normal
0.2
662
Normal
0.2
258
Normal
0.2
786
Normal
0.2
517
Tumor
0.2
882
Normal
0.2
823
Tumor
0.2
491
Tumor
0.2
344
Normal
0.2
713
Tumor
0.2
455
Tumor
0.2
297
Tumor
0.2
975
Tumor
0.2
661
Tumor
0.2
697
Tumor
0.2
355
Tumor
0.2
468
Normal
0.2
1025
Tumor
0.2
938
Normal
0.2
857
Tumor
0.2
471
Tumor
0.2
412
Normal
0.2
448
Normal
0.2
1031
Tumor
0.2
672
Normal
0.2
1046
Normal
0.2
742
Normal
0.2
553
Tumor
0.2
912
Normal
0.2
214
Normal
0.2
396
Normal
0.2
944
Normal
0.2
636
Normal
0.2
1043
Tumor
0.2
925
Tumor
0.2
195
Tumor
0.2
493
Tumor
0.2
714
Normal
0.2
283
Tumor
0.2
1014
Normal
0.1
817
Tumor
0.1
124
Normal
0.1
456
Normal
0.1
432
Normal
0.1
228
Normal
0.1
526
Normal
0.1
1016
Normal
0.1
696
Normal
0.1
617
Tumor
0.1
482
Normal
0.1
1026
Normal
0.1
866
Normal
0.1
147
Tumor
0.1
525
Tumor
0.1
878
Normal
0.1
484
Normal
0.1
955
Tumor
0.1
868
Normal
0.1
824
Normal
0.1
545
Tumor
0.1
616
Normal
0.1
1022
Normal
0.1
271
Tumor
0.1
546
Normal
0.1
746
Normal
0.1
414
Normal
0.1
641
Tumor
0.1
862
Normal
0.1
1032
Normal
0.1
474
Normal
0.1
367
Tumor
0.1
461
Tumor
0.1
428
Normal
0.1
723
Tumor
0.1
392
Normal
0.1
642
Normal
0.1
858
Normal
0.1
343
Tumor
0.1
446
Normal
0.1
286
Normal
0.1
172
Normal
0.1
391
Tumor
0.1
737
Tumor
0.1
1021
Tumor
0.1
354
Normal
0.1
191
Tumor
0.1
861
Tumor
0.1
534
Normal
0.1
426
Normal
0.1
698
Normal
0.1
422
Normal
0.0
537
Tumor
0.0
111
Normal
0.0
554
Normal
0.0
466
Normal
0.0
1045
Tumor
0.0
921
Tumor
0.0
148
Normal
0.0
851
Tumor
0.0
982
Normal
0.0
187
Tumor
0.0
356
Normal
0.0
572
Normal
0.0
535
Tumor
0.0
136
Normal
0.0
777
Tumor
0.0
278
Normal
0.0
666
Normal
0.0
515
Tumor
0.0
394
Normal
0.0
162
Normal
0.0
462
Normal
0.0
363
Tumor
0.0
464
Normal
0.0
627
Tumor
0.0
497
Tumor
0.0
332
Normal
0.0
913
Tumor
0.0
132
Normal
0.0
358
Normal
0.0
413
Tumor
0.0
298
Normal
0.0
222
Normal
0.0
664
Normal
0.0
141
Tumor
0.0
131
Tumor
0.0
727
Tumor
0.0
186
Normal
0.0
864
Normal
0.0
481
Tumor
0.0
376
Normal
0.0
388
Normal
0.0
618
Normal
0.0
452
Normal
-0.1
114
Normal
-0.1
221
Tumor
-0.1
568
Normal
-0.1
1015
Tumor
-0.1
125
Tumor
-0.1
351
Tumor
-0.1
671
Tumor
-0.1
365
Tumor
-0.1
663
Tumor
-0.1
785
Tumor
-0.1
313
Tumor
-0.1
867
Tumor
-0.1
327
Tumor
-0.1
923
Tumor
-0.1
427
Tumor
-0.1
314
Normal
-0.1
145
Tumor
-0.1
564
Normal
-0.1
232
Normal
-0.1
648
Normal
-0.1
527
Tumor
-0.1
967
Tumor
-0.1
261
Tumor
-0.1
196
Normal
-0.1
342
Normal
-0.1
137
Tumor
-0.1
883
Tumor
-0.1
873
Tumor
-0.1
161
Tumor
-0.2
387
Tumor
-0.2
341
Tumor
-0.2
257
Tumor
-0.2
135
Tumor
-0.2
983
Tumor
-0.2
436
Normal
-0.2
573
Tumor
-0.2
353
Tumor
-0.2
285
Tumor
-0.2
463
Tumor
-0.2
375
Tumor
-0.2
685
Tumor
-0.2
741
Tumor
-0.2
715
Tumor
-0.2
571
Tumor
-0.2
915
Tumor
-0.2
385
Tumor
-0.2
128
Normal
-0.2
557
Tumor
-0.2
431
Tumor
-0.3
957
Tumor
-0.3
615
Tumor
-0.3
865
Tumor
-0.3
433
Tumor
-0.3
227
Tumor
-0.3
423
Tumor
-0.3
395
Tumor
-0.3
357
Tumor
-0.3
361
Tumor
-0.3
411
Tumor
-0.3
445
Tumor
-0.3
277
Tumor
-0.3
487
Tumor
-0.3
513
Tumor
-0.3
443
Tumor
-0.3
533
Tumor
-0.3
451
Tumor
-0.3
965
Tumor
-0.4
665
Tumor
-0.4
331
Tumor
-0.4
755
Tumor
-0.4
113
Tumor
-0.4
695
Tumor
-0.4
267
Tumor
-0.4
473
Tumor
-0.4
567
Tumor
-0.4
951
Tumor
-0.4
523
Tumor
-0.4
743
Tumor
-0.5
745
Tumor
-0.5
231
Tumor
-0.5
112
Tumor
-0.5
977
Tumor
-0.5
911
Tumor
-0.5
937
Tumor
-0.5
477
Tumor
-0.5
127
Tumor
-0.6
647
Tumor
-0.6
465
Tumor
-0.6
981
Tumor
-0.6
425
Tumor
-0.6
171
Tumor
-0.6
635
Tumor
-0.7
393
Tumor
-0.7
1041
Tumor
-0.8
123
Tumor
-0.8
435
Tumor
-0.8
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
