MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:3.6 nTPM
HPA Brain:153.0 nTPM
GTEx:3.6 nTPM
FANTOM5:25.9 Scaled Tags Per Million
Pig:55.6 nTPM
Mouse:6.1 nTPM
Allen mouse:0.7 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 153.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 140.9
2219 Male, age 76, both hemispheres 159.3
2411 Female, age 72, unknown 154.3
1830 Male, age 51, unknown 153.0
1833 Male, age 53, unknown 150.6
1827 Male, age 72, unknown 150.4
2019 Male, age 18, unknown 143.7
2828 Female, age 72, unknown 134.6
2666 Male, age 74, left hemisphere 123.9
2586 Male, age 75, left hemisphere 119.9
1870 Female, age 42, unknown 119.1
Dorsal raphe nucleus
nTPM: 136.8
2047 Male, age 72, unknown 157.7
2016 Female, age 72, unknown 150.6
2750 Male, age 76, both hemispheres 138.5
1828 Male, age 53, unknown 123.1
2298 Female, age 72, unknown 114.3
Inferior colliculus
nTPM: 147.3
2849 Male, age 72, unknown 160.1
1848 Female, age 42, unknown 151.4
1890 Male, age 53, unknown 143.0
2097 Female, age 72, unknown 134.8
Median raphe nucleus
nTPM: 131.8
2220 Male, age 76, midline 131.8
Periaquaductal grey, anterior
nTPM: 126.9
1947 Male, age 18, unknown 147.9
1795 Male, age 51, unknown 123.5
2502 Female, age 75, unknown 109.3
Periaquaductal grey, dorsal
nTPM: 153.0
1840 Male, age 53, unknown 161.0
1831 Male, age 72, unknown 156.2
2464 Female, age 72, unknown 149.7
2850 Male, age 76, both hemispheres 145.3
Periaquaductal grey, lateral
nTPM: 150.8
2140 Male, age 76, both hemispheres 156.5
2053 Male, age 18, unknown 148.9
2272 Male, age 74, both hemispheres 147.0
Pretectal area
nTPM: 135.6
2316 Male, age 76, right hemisphere 150.1
2667 Female, age 75, unknown 148.7
2273 Male, age 74, both hemispheres 148.1
2407 Male, age 75, both hemispheres 146.1
1944 Female, age 72, unknown 145.8
2825 Male, age 18, unknown 140.8
2224 Female, age 72, unknown 130.3
2007 Male, age 72, unknown 127.4
1816 Male, age 51, unknown 127.0
1815 Male, age 53, unknown 121.8
1817 Female, age 42, unknown 105.2
Red nucleus
nTPM: 135.9
2588 Male, age 74, left hemisphere 152.0
2823 Male, age 76, right hemisphere 148.3
1865 Male, age 51, unknown 146.6
2725 Female, age 75, unknown 142.8
1954 Female, age 42, unknown 141.4
2503 Female, age 72, unknown 140.0
2584 Male, age 75, left hemisphere 138.3
1904 Male, age 53, unknown 137.5
2227 Male, age 72, unknown 121.3
2769 Male, age 72, unknown 121.3
2785 Male, age 18, unknown 120.8
1821 Female, age 72, unknown 120.1
Substantia nigra
nTPM: 139.9
2409 Female, age 72, unknown 173.7
2590 Female, age 75, unknown 152.0
2583 Male, age 75, right hemisphere 149.7
1941 Male, age 53, unknown 149.6
2699 Male, age 18, unknown 136.4
1889 Female, age 72, unknown 131.4
1916 Female, age 42, unknown 130.1
1851 Male, age 51, unknown 129.6
2241 Male, age 72, unknown 127.5
2665 Male, age 74, both hemispheres 119.4
Superior colliculus
nTPM: 133.2
1895 Male, age 76, right hemisphere 161.7
2087 Female, age 72, unknown 143.0
1995 Male, age 72, unknown 137.8
1913 Female, age 42, unknown 137.1
2587 Male, age 74, left hemisphere 134.1
1839 Male, age 51, unknown 125.8
1796 Male, age 53, unknown 125.7
2664 Male, age 75, both hemispheres 124.0
2261 Male, age 18, unknown 122.1
2668 Female, age 75, unknown 120.2
Ventral tegmental area
nTPM: 136.6
2410 Female, age 72, unknown 153.3
2021 Male, age 53, unknown 146.1
1942 Male, age 51, unknown 141.1
2218 Male, age 76, both hemispheres 129.2
1915 Female, age 42, unknown 125.6
2223 Female, age 72, unknown 124.4

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 3.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 3.6
Samples: 139

Max nTPM: 8.2
Min nTPM: 1.8
Std nTPM: 1.1
Median nTPM: 3.3
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 8.2
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 7.7
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 7.3
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 6.7
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 6.5
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 6.0
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 5.8
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 5.7
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 5.5
GTEX-17HG3-0011-R2a-SM-7MGVX 30-39 years, female 5.4
GTEX-1IL2U-0011-R2a-SM-ARU6V 60-69 years, male 5.3
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 25.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 25.9
FF:10158-103A5 76 years, female 25.9

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 55.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 55.6
Samples: 4

Max nTPM: 74.5
Min nTPM: 43.9
Sample A Female 74.5
Sample B Female 50.6
Sample C Male 53.3
Sample D Male 43.9
Midbrain
nTPM: 49.0
Samples: 4

Max nTPM: 72.5
Min nTPM: 26.9
Sample A Female 72.5
Sample B Female 57.8
Sample C Male 38.7
Sample D Male 26.9
Periaqueductal gray
nTPM: 44.2
Samples: 3

Max nTPM: 46.3
Min nTPM: 42.8
Sample B Female 42.8
Sample C Male 46.3
Sample D Male 43.6
Superior colliculi
nTPM: 42.4
Samples: 4

Max nTPM: 52.0
Min nTPM: 26.4
Sample A Female 52.0
Sample B Female 26.4
Sample C Male 47.0
Sample D Male 44.0

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 6.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 6.1
Samples: 4

Max nTPM: 6.4
Min nTPM: 5.2
Sample A Male 6.4
Sample B Male 6.4
Sample C Female 6.2
Sample D Female 5.2

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.7
76003630 Antisense, RP_060608_02_H12, Mouse strain C57BL/6J (56 days, male) 0.7

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