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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
FERMT3 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
10.0
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
128.8
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
68.9
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
65.6
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
56.7
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
47.9
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
43.3
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
39.4
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
38.4
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
36.7
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
35.6
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
33.6
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
33.3
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
31.6
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
31.6
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
30.6
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
30.0
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
29.8
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
26.7
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
25.8
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
25.8
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
25.6
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
25.2
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
24.5
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
23.7
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
23.2
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
22.7
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
22.2
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
21.9
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
21.5
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
21.0
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
20.9
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
20.6
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
20.4
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
20.1
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
19.8
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
19.5
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
19.5
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
19.2
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
19.1
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
18.6
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
18.5
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
18.5
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
18.4
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
18.4
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
18.3
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
18.3
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
17.9
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
17.4
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
17.3
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
17.2
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
16.7
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
16.4
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
16.1
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
16.0
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
16.0
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
15.9
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
15.9
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
15.8
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
15.8
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
15.5
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
15.3
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
15.3
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
15.2
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
15.0
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
15.0
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
14.9
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
14.9
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
14.7
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
14.6
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
14.5
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
14.4
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
14.3
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
14.0
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
14.0
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
13.8
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
13.8
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
13.5
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
13.3
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
13.1
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
13.1
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
13.0
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
12.9
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
12.8
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
12.5
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
12.4
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
12.4
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
12.3
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
12.2
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
12.1
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
12.0
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
12.0
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
11.9
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
11.7
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
11.7
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
11.7
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
11.6
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
11.5
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
11.4
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
11.3
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
11.3
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
11.1
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
11.1
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
10.9
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
10.8
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
10.8
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
10.7
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
10.7
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
10.5
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
10.4
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
10.4
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
10.4
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
10.1
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
10.0
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
10.0
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
10.0
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
9.9
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
9.8
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
9.8
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
9.7
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
9.6
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
9.6
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
9.6
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
9.5
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
9.5
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
9.5
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
9.2
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
9.1
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
9.1
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
9.1
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
9.0
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
9.0
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
8.9
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
8.9
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
8.9
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
8.9
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
8.9
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
8.9
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
8.8
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
8.8
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
8.7
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
8.6
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
8.6
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
8.6
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
8.5
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
8.5
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
8.5
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
8.4
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
8.3
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
8.3
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
8.3
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
8.2
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
8.2
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
8.1
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
8.1
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
8.1
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
8.0
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
8.0
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
8.0
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
7.9
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
7.9
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
7.9
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
7.9
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
7.8
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
7.7
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
7.7
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
7.6
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
7.6
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
7.5
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
7.5
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
7.5
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
7.5
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
7.4
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
7.4
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
7.4
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
7.4
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
7.4
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
7.4
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
7.3
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
7.3
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
7.3
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
7.3
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
7.3
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
7.3
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
7.2
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
7.1
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
7.1
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
7.0
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
7.0
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
7.0
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
7.0
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
6.8
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
6.8
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
6.8
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
6.8
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
6.8
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
6.7
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
6.7
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
6.7
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
6.6
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
6.6
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
6.5
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
6.5
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
6.5
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
6.4
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
6.4
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
6.4
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
6.4
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
6.4
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
6.4
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
6.3
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
6.3
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
6.3
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
6.2
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
6.2
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
6.2
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
6.1
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
6.1
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
6.0
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
6.0
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
6.0
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
6.0
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
5.9
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
5.9
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
5.9
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
5.9
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
5.9
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
5.7
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
5.7
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
5.7
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
5.6
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
5.6
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
5.6
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
5.6
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
5.6
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
5.5
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
5.5
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
5.5
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
5.5
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
5.4
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
5.4
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
5.4
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
5.2
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
5.2
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
5.1
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
5.0
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
5.0
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
5.0
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
4.9
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
4.8
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
4.8
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
4.8
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
4.8
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
4.7
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
4.6
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
4.6
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
4.6
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
4.6
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
4.6
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
4.6
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
4.6
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
4.5
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
4.5
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
4.5
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
4.5
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
4.4
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
4.4
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
4.4
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
4.3
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
4.2
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
4.1
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
4.1
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
4.0
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
4.0
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
4.0
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
4.0
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
4.0
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
4.0
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
3.9
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
3.9
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
3.9
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
3.9
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
3.9
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
3.9
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
3.8
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
3.7
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
3.7
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
3.7
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
3.7
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
3.7
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
3.7
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
3.6
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
3.6
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
3.6
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
3.6
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
3.6
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
3.6
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
3.6
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
3.6
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
3.6
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
3.6
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
3.4
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
3.4
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
3.3
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
3.3
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
3.3
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
3.3
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
3.3
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
3.3
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
3.2
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
3.2
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
3.2
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
3.1
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
3.1
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
3.1
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
3.1
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
3.1
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
3.0
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
3.0
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
2.9
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
2.9
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
2.8
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
2.8
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
2.8
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
2.7
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
2.7
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
2.6
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
2.6
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
2.6
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
2.5
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
2.5
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
2.5
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
2.5
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
2.4
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
2.4
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
2.4
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
2.4
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
2.4
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
2.3
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
2.3
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
2.1
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
2.1
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
2.1
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
2.1
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
2.1
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
2.1
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
2.0
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
2.0
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
2.0
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
2.0
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
1.9
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
1.9
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
1.7
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
1.6
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
1.6
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
1.4
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
1.4
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
1.3
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
1.3
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
1.1
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
1.0
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
0.7
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
FERMT3 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
9.1
Number of samples
231
Samples
Sample
Description
TPM
DO23523
0 years, male, NA, stage:3, alive, 1080 days
153.0
DO23547
0 years, male, NA, stage:1, alive, 1020 days
75.8
DO45277
0 years, male, NA, stage:3, alive, 600 days
71.3
DO45287
0 years, male, NA, stage:1, alive, 390 days
51.5
DO48747
0 years, male, NA, stage:3, alive, 540 days
45.7
DO45297
0 years, female, NA, stage:4, dead, 1260 days
44.8
DO45299
0 years, female, NA, stage:1, alive, 1440 days
41.5
DO23549
0 years, male, NA, stage:3, alive, 990 days
32.9
DO23530
0 years, male, NA, stage:4, dead, 180 days
31.1
DO50819
0 years, female, NA, stage:2, alive, 510 days
30.1
DO48720
0 years, female, NA, stage:2, alive, 570 days
28.8
DO45141
0 years, male, NA, stage:2, alive, 1320 days
28.1
DO50829
0 years, male, NA, stage:3, alive, 570 days
27.1
DO50778
0 years, male, NA, stage:4, alive, 630 days
26.5
DO45307
0 years, female, NA, stage:4, dead, 240 days
26.2
DO45139
0 years, male, NA, stage:3, alive, 1320 days
23.6
DO45135
0 years, male, NA, stage:1, alive, 1410 days
22.5
DO45157
0 years, male, NA, stage:2, alive, 1980 days
20.1
DO45275
0 years, male, NA, stage:3, dead, 10 days
20.1
DO23535
0 years, male, NA, stage:1, alive, 960 days
19.9
DO23514
0 years, male, NA, stage:2, alive, 1290 days
19.4
DO50800
0 years, male, NA, stage:2, alive, 510 days
19.1
DO48728
0 years, female, NA, stage:2, alive, 150 days
19.0
DO48697
0 years, female, NA, stage:2, dead, 810 days
17.8
DO48700
0 years, female, NA, stage:2, alive, 810 days
17.3
DO23519
0 years, male, NA, stage:3, alive, 630 days
16.5
DO45095
0 years, male, NA, stage:2, alive, 1620 days
16.5
DO45285
0 years, male, NA, stage:3, alive, 480 days
16.0
DO45249
0 years, male, NA, stage:1, alive, 630 days
15.9
DO45225
0 years, male, NA, stage:1, alive, 1050 days
15.0
DO45153
0 years, female, NA, stage:2, alive, 1380 days
15.0
DO45155
0 years, male, NA, stage:2, alive, 2160 days
14.8
DO23543
0 years, male, NA, stage:2, alive, 1020 days
14.7
DO50787
0 years, male, NA, stage:3, alive, 480 days
14.6
DO45131
0 years, male, NA, stage:4, dead, 360 days
14.5
DO45145
0 years, male, NA, stage:3, dead, 60 days
14.5
DO45115
0 years, male, NA, stage:2, alive, 840 days
14.3
DO48730
0 years, female, NA, stage:2, alive, 630 days
14.3
DO23525
0 years, male, NA, stage:4, alive, 1050 days
13.9
DO48693
0 years, male, NA, stage:2, alive, 900 days
13.3
DO45181
0 years, female, NA, stage:2, alive, 1200 days
12.8
DO50805
0 years, male, NA, stage:2, alive, 690 days
12.7
DO50803
0 years, female, NA, stage:1, alive, 540 days
12.1
DO23515
0 years, male, NA, stage:2, alive, 1230 days
11.9
DO50845
0 years, male, NA, stage:3, alive, 210 days
11.7
DO23546
0 years, male, NA, stage:2, alive, 1050 days
11.4
DO48679
0 years, male, NA, stage:2, alive, 1200 days
11.1
DO48737
0 years, male, NA, stage:1, alive, 720 days
11.1
DO45159
0 years, male, NA, stage:3, alive, 1470 days
10.9
DO45265
0 years, male, NA, stage:3, alive, 1020 days
10.7
DO45261
0 years, male, NA, stage:3, alive, 990 days
10.6
DO48732
0 years, male, NA, stage:3, alive, 630 days
10.4
DO45273
0 years, male, NA, stage:2, alive, 480 days
10.3
DO45231
0 years, male, NA, stage:2, alive, 930 days
10.3
DO45165
0 years, male, NA, stage:2, alive, 690 days
10.2
DO48736
0 years, female, NA, stage:1, alive, 600 days
10.0
DO45127
0 years, male, NA, stage:3, dead, 420 days
9.9
DO50799
0 years, female, NA, stage:2, alive, 540 days
9.9
DO48743
0 years, female, NA, stage:2, alive, 570 days
9.6
DO45301
0 years, male, NA, stage:2, dead, 1440 days
9.6
DO45177
0 years, female, NA, stage:3, alive, 1260 days
9.6
DO48725
0 years, male, NA, stage:1, alive, 780 days
9.5
DO45211
0 years, male, NA, stage:3, alive, 240 days
9.5
DO45303
0 years, female, NA, stage:3, alive, 990 days
9.4
DO45279
0 years, male, NA, stage:3, alive, 1290 days
9.4
DO48733
0 years, male, NA, stage:2, alive, 600 days
9.4
DO45103
0 years, male, NA, stage:3, alive, 450 days
9.3
DO45221
0 years, female, NA, stage:4, dead, 390 days
9.3
DO45109
0 years, male, NA, stage:2, alive, 1590 days
9.2
DO45241
0 years, male, NA, stage:1, alive, 1080 days
9.1
DO45201
0 years, male, NA, stage:1, alive, 900 days
9.0
DO45283
0 years, male, NA, stage:3, alive, 510 days
8.9
DO45233
0 years, male, NA, stage:3, alive, 900 days
8.9
DO23524
0 years, female, NA, stage:2, alive, 1050 days
8.2
DO45251
0 years, female, NA, stage:2, alive, 900 days
8.2
DO50806
0 years, male, NA, stage:4, alive, 540 days
8.0
DO50809
0 years, male, NA, stage:3, dead, 720 days
8.0
DO45161
0 years, male, NA, stage:2, dead, 540 days
7.9
DO50818
0 years, male, NA, stage:2, alive, 510 days
7.7
DO48716
0 years, male, NA, stage:2, alive, 720 days
7.5
DO45223
0 years, male, NA, stage:4, alive, 1020 days
7.4
DO48759
0 years, male, NA, stage:3, alive, 720 days
7.4
DO23526
0 years, male, NA, stage:3, alive, 1050 days
7.2
DO23531
0 years, female, NA, stage:3, alive, 900 days
7.2
DO48715
0 years, female, NA, stage:2, dead, 690 days
7.2
DO45235
0 years, female, NA, stage:1, alive, 900 days
7.2
DO45092
0 years, male, NA, stage:4, dead, 1200 days
7.2
DO23551
0 years, male, NA, stage:3, dead, 150 days
7.1
DO23541
0 years, male, NA, stage:2, alive, 930 days
7.1
DO23510
0 years, female, NA, stage:2, alive, 870 days
7.1
DO45143
0 years, male, NA, stage:3, alive, 1290 days
7.1
DO23511
0 years, female, NA, stage:3, dead, 180 days
6.9
DO23536
0 years, male, NA, stage:2, alive, 930 days
6.9
DO48712
0 years, male, NA, stage:2, alive, 810 days
6.9
DO23542
0 years, male, NA, stage:3, alive, 960 days
6.6
DO50855
0 years, male, NA, stage:2, alive, 570 days
6.5
DO50822
0 years, male, NA, stage:2, alive, 510 days
6.5
DO45229
0 years, male, NA, stage:1, alive, 990 days
6.5
DO23527
0 years, male, NA, stage:1, alive, 1050 days
6.5
DO50850
0 years, male, NA, stage:3, alive, 720 days
6.4
DO23548
0 years, female, NA, stage:1, alive, 840 days
6.4
DO45207
0 years, male, NA, stage:1, alive, 1050 days
6.4
DO45257
0 years, male, NA, stage:3, alive, 810 days
6.4
DO45255
0 years, male, NA, stage:3, alive, 720 days
6.3
DO45217
0 years, female, NA, stage:3, dead, 270 days
6.3
DO45281
0 years, male, NA, stage:4, alive, 750 days
6.2
DO45117
0 years, female, NA, stage:2, dead, 1110 days
6.2
DO23508
0 years, female, NA, stage:2, alive, 390 days
6.2
DO50776
0 years, male, NA, stage:1, alive, 690 days
6.2
DO23550
0 years, male, NA, stage:1, alive, 990 days
6.1
DO227801
0 years, female, NA, stage:1, alive, 660 days
6.0
DO45289
0 years, female, NA, stage:3, alive, 360 days
5.8
DO48717
0 years, male, NA, stage:4, dead, 180 days
5.8
DO45185
0 years, male, NA, stage:2, alive, 600 days
5.8
DO45305
0 years, male, NA, stage:4, alive, 300 days
5.7
DO45243
0 years, female, NA, stage:3, alive, 930 days
5.7
DO45269
0 years, male, NA, stage:3, alive, 750 days
5.7
DO50791
0 years, female, NA, stage:1, dead, 480 days
5.7
DO45263
0 years, male, NA, stage:3, dead, 270 days
5.5
DO48761
0 years, male, NA, stage:2, alive, 870 days
5.3
DO45094
0 years, male, NA, stage:3, alive, 1650 days
5.3
DO48672
0 years, male, NA, stage:2, alive, 450 days
5.3
DO45121
0 years, male, NA, stage:3, alive, 1530 days
5.3
DO50815
0 years, male, NA, stage:3, alive, 150 days
5.2
DO45149
0 years, female, NA, stage:2, alive, 1260 days
5.0
DO45203
0 years, female, NA, stage:2, alive, 1170 days
5.0
DO45239
0 years, male, NA, stage:2, alive, 870 days
4.9
DO45197
0 years, male, NA, stage:2, alive, 1170 days
4.9
DO45267
0 years, male, NA, stage:3, dead, 570 days
4.9
DO45113
0 years, male, NA, stage:3, alive, 1560 days
4.8
DO23532
0 years, female, NA, stage:1, alive, 960 days
4.7
DO45119
0 years, male, NA, stage:3, dead, 510 days
4.7
DO48742
0 years, male, NA, stage:2, alive, 600 days
4.7
DO45205
0 years, female, NA, stage:2, dead, 90 days
4.6
DO50807
0 years, male, NA, stage:1, alive, 540 days
4.6
DO23518
0 years, male, NA, stage:2, alive, 1320 days
4.6
DO45137
0 years, male, NA, stage:1, alive, 1320 days
4.5
DO50774
0 years, female, NA, stage:2, alive, 720 days
4.5
DO45199
0 years, female, NA, stage:2, alive, 1350 days
4.5
DO50808
0 years, male, NA, stage:2, alive, 570 days
4.5
DO45209
0 years, male, NA, stage:4, alive, 1350 days
4.4
DO45101
0 years, male, NA, stage:2, alive, 1680 days
4.4
DO23537
0 years, male, NA, stage:2, dead, 900 days
4.3
DO50813
0 years, male, NA, stage:2, alive, 420 days
4.2
DO23540
0 years, male, NA, stage:1, alive, 750 days
4.2
DO23544
0 years, male, NA, stage:2, alive, 960 days
4.1
DO45091
0 years, male, NA, stage:2, dead, 1320 days
4.1
DO45237
0 years, male, NA, stage:2, alive, 900 days
4.1
DO50840
0 years, male, NA, stage:2, alive, 330 days
4.0
DO45213
0 years, male, NA, stage:1, alive, 1200 days
3.9
DO48701
0 years, male, NA, stage:2, alive, 780 days
3.9
DO50814
0 years, male, NA, stage:3, alive, 420 days
3.9
DO48760
0 years, female, NA, stage:2, alive, 690 days
3.9
DO50844
0 years, male, NA, stage:4, alive, 300 days
3.8
DO48723
0 years, male, NA, stage:1, alive, 600 days
3.7
DO45093
0 years, male, NA, stage:2, dead, 720 days
3.7
DO45173
0 years, male, NA, stage:3, alive, 1170 days
3.7
DO45193
0 years, female, NA, stage:4, dead, 120 days
3.7
DO45215
0 years, male, NA, stage:2, alive, 1170 days
3.6
DO45259
0 years, male, NA, stage:3, alive, 330 days
3.6
DO45247
0 years, female, NA, stage:2, alive, 210 days
3.5
DO23545
0 years, male, NA, stage:2, dead, 570 days
3.5
DO45099
0 years, male, NA, stage:3, alive, 1590 days
3.4
DO48704
0 years, female, NA, stage:3, alive, 750 days
3.4
DO45105
0 years, male, NA, stage:1, alive, 1680 days
3.4
DO45167
0 years, male, NA, stage:2, dead, 1440 days
3.4
DO23539
0 years, male, NA, stage:1, alive, 1110 days
3.3
DO23512
0 years, male, NA, stage:1, alive, 1260 days
3.2
DO50820
0 years, female, NA, stage:3, alive, 510 days
3.2
DO45183
0 years, female, NA, stage:2, dead, 570 days
3.1
DO45189
0 years, female, NA, stage:2, alive, 1200 days
3.1
DO45219
0 years, male, NA, stage:2, alive, 1080 days
3.1
DO48719
0 years, male, NA, stage:2, alive, 690 days
3.1
DO50816
0 years, male, NA, stage:2, alive, 390 days
3.1
DO45187
0 years, female, NA, stage:1, alive, 1260 days
3.0
DO50785
0 years, male, NA, stage:4, dead, 90 days
2.9
DO45096
0 years, male, NA, stage:2, dead, 1290 days
2.8
DO50825
0 years, male, NA, stage:2, alive, 390 days
2.8
DO23521
0 years, male, NA, stage:3, alive, 1110 days
2.8
DO45125
0 years, male, NA, stage:3, alive, 1680 days
2.7
DO227643
0 years, male, NA, stage:2, alive, 1260 days
2.7
DO45253
0 years, male, NA, stage:2, alive, 870 days
2.6
DO50802
0 years, male, NA, stage:2, alive, 930 days
2.6
DO50839
0 years, female, NA, stage:3, alive, 330 days
2.5
DO45179
0 years, female, NA, stage:2, alive, 600 days
2.4
DO45195
0 years, male, NA, stage:1, alive, 390 days
2.4
DO45107
0 years, female, NA, stage:2, alive, 1710 days
2.4
DO23552
0 years, female, NA, stage:1, alive, 810 days
2.3
DO45171
0 years, male, NA, stage:3, alive, 600 days
2.3
DO50798
0 years, male, NA, stage:3, dead, 30 days
2.2
DO45123
0 years, female, NA, stage:2, dead, 570 days
2.1
DO23529
0 years, male, NA, stage:4, alive, 930 days
2.1
DO50857
0 years, male, NA, stage:2, alive, 210 days
2.1
DO48741
0 years, male, NA, stage:3, alive, 240 days
2.1
DO48695
0 years, male, NA, stage:2, alive, 720 days
1.9
DO45191
0 years, female, NA, stage:2, alive, 1200 days
1.9
DO23538
0 years, male, NA, stage:2, alive, 450 days
1.9
DO48674
0 years, male, NA, stage:2, alive, 1260 days
1.9
DO45245
0 years, female, NA, stage:2, dead, 240 days
1.9
DO50783
0 years, male, NA, stage:3, alive, 480 days
1.9
DO23517
0 years, male, NA, stage:2, alive, 1200 days
1.8
DO45227
0 years, female, NA, stage:2, alive, 1020 days
1.8
DO50817
0 years, male, NA, stage:2, alive, 390 days
1.8
DO48757
0 years, female, NA, stage:3, alive, 480 days
1.7
DO50832
0 years, male, NA, stage:3, alive, 90 days
1.7
DO45169
0 years, male, NA, stage:3, alive, 1350 days
1.7
DO23513
0 years, male, NA, stage:3, alive, 1200 days
1.6
DO45111
0 years, male, NA, stage:2, alive, 1590 days
1.6
DO23528
0 years, female, NA, stage:2, alive, 1020 days
1.6
DO45133
0 years, male, NA, stage:3, dead, 660 days
1.6
DO50793
0 years, male, NA, stage:4, alive, 540 days
1.6
DO48681
0 years, male, NA, stage:2, alive, 900 days
1.6
DO50789
0 years, female, NA, stage:2, alive, 570 days
1.5
DO50804
0 years, male, NA, stage:2, alive, 720 days
1.5
DO45097
0 years, male, NA, stage:3, alive, 1620 days
1.4
DO45163
0 years, male, NA, stage:2, alive, 960 days
1.4
DO48682
0 years, female, NA, stage:3, dead, 120 days
1.3
DO48727
0 years, female, NA, stage:2, dead, 390 days
1.3
DO48706
0 years, male, NA, stage:2, alive, 870 days
1.2
DO23534
0 years, male, NA, stage:2, alive, 840 days
1.1
DO45129
0 years, male, NA, stage:3, alive, 1470 days
1.0
DO23533
0 years, male, NA, stage:2, alive, 900 days
1.0
DO45175
0 years, male, NA, stage:2, alive, 1140 days
1.0
DO48677
0 years, male, NA, stage:3, alive, 1140 days
0.9
DO50811
0 years, male, NA, stage:1, alive, 450 days
0.9
DO23516
0 years, male, NA, stage:3, dead, 20 days
0.8
DO23509
0 years, male, NA, stage:3, dead, 780 days
0.8
DO50859
0 years, male, NA, stage:2, alive, 180 days
0.8
DO48751
0 years, male, NA, stage:2, dead, 480 days
0.5
DO48746
0 years, male, NA, stage:3, alive, 570 days
0.4
DO48721
0 years, female, NA, stage:1, alive, 900 days
0.4
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
211
Tumor
1.3
661
Tumor
1.3
724
Normal
1.2
343
Tumor
1.1
434
Normal
1.0
311
Tumor
1.0
917
Tumor
0.8
671
Tumor
0.8
125
Tumor
0.8
192
Normal
0.8
213
Tumor
0.8
877
Tumor
0.8
217
Tumor
0.7
328
Normal
0.7
966
Normal
0.7
536
Normal
0.7
498
Normal
0.7
478
Normal
0.7
814
Normal
0.7
188
Normal
0.7
391
Tumor
0.7
492
Normal
0.7
126
Normal
0.7
535
Tumor
0.7
943
Tumor
0.6
262
Normal
0.6
524
Normal
0.6
283
Tumor
0.6
1031
Tumor
0.6
467
Tumor
0.6
713
Tumor
0.6
538
Normal
0.6
375
Tumor
0.6
385
Tumor
0.6
573
Tumor
0.6
978
Normal
0.6
851
Tumor
0.5
224
Normal
0.5
721
Tumor
0.5
351
Tumor
0.5
815
Tumor
0.5
444
Normal
0.5
491
Tumor
0.5
141
Tumor
0.5
455
Tumor
0.5
823
Tumor
0.5
916
Normal
0.5
697
Tumor
0.5
124
Normal
0.5
268
Normal
0.5
284
Normal
0.4
195
Tumor
0.4
686
Normal
0.4
852
Normal
0.4
368
Normal
0.4
914
Normal
0.4
185
Tumor
0.4
191
Tumor
0.4
861
Tumor
0.4
366
Normal
0.4
628
Normal
0.4
362
Normal
0.4
146
Normal
0.4
142
Normal
0.4
954
Normal
0.4
813
Tumor
0.4
386
Normal
0.4
384
Normal
0.4
138
Normal
0.4
383
Tumor
0.4
563
Tumor
0.4
447
Tumor
0.3
272
Normal
0.3
468
Normal
0.3
1028
Normal
0.3
558
Normal
0.3
817
Tumor
0.3
223
Tumor
0.3
421
Tumor
0.3
1042
Normal
0.3
312
Normal
0.3
212
Normal
0.3
976
Normal
0.3
857
Tumor
0.3
367
Tumor
0.3
365
Tumor
0.3
114
Normal
0.3
1015
Tumor
0.3
816
Normal
0.3
662
Normal
0.3
574
Normal
0.2
352
Normal
0.2
218
Normal
0.2
963
Tumor
0.2
984
Normal
0.2
778
Normal
0.2
975
Tumor
0.2
722
Normal
0.2
528
Normal
0.2
952
Normal
0.2
332
Normal
0.2
344
Normal
0.2
187
Tumor
0.2
396
Normal
0.2
471
Tumor
0.2
672
Normal
0.2
456
Normal
0.2
145
Tumor
0.2
494
Normal
0.2
716
Normal
0.2
956
Normal
0.2
136
Normal
0.2
415
Tumor
0.2
111
Normal
0.2
516
Normal
0.2
432
Normal
0.2
884
Normal
0.2
394
Normal
0.1
424
Normal
0.1
364
Normal
0.1
461
Tumor
0.1
388
Normal
0.1
464
Normal
0.1
214
Normal
0.1
493
Tumor
0.1
983
Tumor
0.1
1044
Normal
0.1
392
Normal
0.1
363
Tumor
0.1
867
Tumor
0.1
228
Normal
0.1
666
Normal
0.1
968
Normal
0.1
354
Normal
0.1
926
Normal
0.1
428
Normal
0.1
818
Normal
0.1
925
Tumor
0.1
881
Tumor
0.1
526
Normal
0.1
488
Normal
0.1
858
Normal
0.1
938
Normal
0.1
913
Tumor
0.1
355
Tumor
0.1
617
Tumor
0.1
546
Normal
0.0
376
Normal
0.0
297
Tumor
0.0
1016
Normal
0.0
958
Normal
0.0
922
Normal
0.0
525
Tumor
0.0
474
Normal
0.0
738
Normal
0.0
868
Normal
0.0
413
Tumor
0.0
1021
Tumor
0.0
874
Normal
0.0
912
Normal
0.0
258
Normal
0.0
1043
Tumor
0.0
564
Normal
0.0
278
Normal
0.0
162
Normal
0.0
433
Tumor
0.0
964
Normal
0.0
514
Normal
0.0
387
Tumor
0.0
451
Tumor
0.0
358
Normal
0.0
918
Normal
0.0
864
Normal
0.0
715
Tumor
0.0
518
Normal
0.0
664
Normal
0.0
446
Normal
0.0
636
Normal
0.0
744
Normal
0.0
756
Normal
0.0
172
Normal
0.0
924
Normal
0.0
1032
Normal
0.0
286
Normal
0.0
1046
Normal
0.0
472
Normal
0.0
786
Normal
0.0
642
Normal
0.0
616
Normal
0.0
882
Normal
-0.1
196
Normal
-0.1
422
Normal
-0.1
696
Normal
-0.1
186
Normal
-0.1
883
Tumor
-0.1
132
Normal
-0.1
955
Tumor
-0.1
466
Normal
-0.1
648
Normal
-0.1
342
Normal
-0.1
862
Normal
-0.1
414
Normal
-0.1
395
Tumor
-0.1
568
Normal
-0.1
944
Normal
-0.1
728
Normal
-0.1
665
Tumor
-0.1
232
Normal
-0.1
557
Tumor
-0.1
356
Normal
-0.1
148
Normal
-0.1
618
Normal
-0.1
298
Normal
-0.1
137
Tumor
-0.1
866
Normal
-0.1
452
Normal
-0.1
128
Normal
-0.1
416
Normal
-0.1
314
Normal
-0.1
824
Normal
-0.1
135
Tumor
-0.1
685
Tumor
-0.1
641
Tumor
-0.1
878
Normal
-0.1
463
Tumor
-0.1
426
Normal
-0.1
412
Normal
-0.1
1045
Tumor
-0.1
572
Normal
-0.1
261
Tumor
-0.2
723
Tumor
-0.2
1026
Normal
-0.2
113
Tumor
-0.2
553
Tumor
-0.2
714
Normal
-0.2
953
Tumor
-0.2
462
Normal
-0.2
554
Normal
-0.2
427
Tumor
-0.2
222
Normal
-0.2
545
Tumor
-0.2
161
Tumor
-0.2
534
Normal
-0.2
1014
Normal
-0.2
448
Normal
-0.2
331
Tumor
-0.2
746
Normal
-0.2
663
Tumor
-0.2
742
Normal
-0.3
982
Normal
-0.3
863
Tumor
-0.3
482
Normal
-0.3
698
Normal
-0.3
967
Tumor
-0.3
1022
Normal
-0.3
423
Tumor
-0.3
951
Tumor
-0.3
231
Tumor
-0.3
755
Tumor
-0.3
483
Tumor
-0.3
484
Normal
-0.3
537
Tumor
-0.3
517
Tumor
-0.4
361
Tumor
-0.4
481
Tumor
-0.4
785
Tumor
-0.4
627
Tumor
-0.4
271
Tumor
-0.4
443
Tumor
-0.4
915
Tumor
-0.4
436
Normal
-0.4
221
Tumor
-0.4
727
Tumor
-0.4
567
Tumor
-0.4
937
Tumor
-0.4
285
Tumor
-0.4
353
Tumor
-0.4
921
Tumor
-0.4
923
Tumor
-0.4
865
Tumor
-0.5
277
Tumor
-0.5
127
Tumor
-0.5
615
Tumor
-0.5
873
Tumor
-0.5
327
Tumor
-0.5
341
Tumor
-0.6
257
Tumor
-0.6
227
Tumor
-0.6
527
Tumor
-0.6
497
Tumor
-0.6
267
Tumor
-0.6
147
Tumor
-0.7
1027
Tumor
-0.7
487
Tumor
-0.7
515
Tumor
-0.7
1025
Tumor
-0.7
112
Tumor
-0.7
431
Tumor
-0.7
977
Tumor
-0.8
571
Tumor
-0.8
393
Tumor
-0.8
965
Tumor
-0.8
1041
Tumor
-0.8
477
Tumor
-0.8
313
Tumor
-0.8
957
Tumor
-0.9
473
Tumor
-0.9
465
Tumor
-0.9
445
Tumor
-0.9
737
Tumor
-0.9
425
Tumor
-0.9
647
Tumor
-0.9
981
Tumor
-0.9
411
Tumor
-1.0
171
Tumor
-1.0
523
Tumor
-1.0
533
Tumor
-1.0
513
Tumor
-1.0
695
Tumor
-1.0
131
Tumor
-1.0
123
Tumor
-1.0
911
Tumor
-1.1
777
Tumor
-1.1
741
Tumor
-1.1
1013
Tumor
-1.2
635
Tumor
-1.2
745
Tumor
-1.2
357
Tumor
-1.2
435
Tumor
-1.3
743
Tumor
-1.6
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.