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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
LSM14B is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
15.5
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
89.9
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
77.6
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
75.9
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
58.3
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
54.9
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
46.1
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
44.3
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
41.8
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
41.7
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
41.2
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
38.3
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
37.3
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
36.8
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
36.6
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
33.2
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
33.0
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
32.3
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
32.3
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
31.9
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
31.4
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
30.7
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
30.7
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
30.3
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
29.5
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
29.4
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
29.2
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
28.7
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
27.9
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
27.7
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
27.4
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
27.1
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
27.0
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
27.0
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
26.8
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
26.8
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
26.7
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
26.5
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
26.4
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
26.4
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
26.3
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
26.2
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
26.0
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
25.5
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
25.3
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
25.2
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
25.1
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
25.1
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
25.1
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
24.7
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
24.6
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
24.5
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
24.1
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
24.0
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
23.9
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
23.3
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
23.2
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
22.9
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
22.9
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
22.8
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
22.8
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
22.8
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
22.7
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
22.7
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
22.6
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
22.3
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
22.3
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
22.2
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
22.1
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
22.0
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
21.9
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
21.8
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
21.7
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
21.5
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
21.5
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
21.1
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
21.0
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
20.7
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
20.7
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
20.6
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
20.4
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
20.4
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
20.1
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
20.0
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
19.8
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
19.8
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
19.7
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
19.7
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
19.4
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
19.3
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
19.3
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
19.3
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
19.3
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
19.2
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
19.2
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
19.1
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
19.0
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
19.0
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
18.9
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
18.7
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
18.7
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
18.7
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
18.7
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
18.6
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
18.5
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
18.4
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
18.4
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
18.0
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
18.0
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
17.9
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
17.9
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
17.7
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
17.6
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
17.5
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
17.5
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
17.4
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
17.1
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
17.1
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
17.1
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
17.1
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
17.1
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
17.0
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
16.9
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
16.9
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
16.7
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
16.6
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
16.6
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
16.6
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
16.6
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
16.6
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
16.6
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
16.5
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
16.4
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
16.3
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
16.3
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
16.3
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
16.2
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
16.0
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
16.0
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
15.7
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
15.7
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
15.7
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
15.7
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
15.5
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
15.4
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
15.4
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
15.4
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
15.3
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
15.3
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
15.1
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
15.0
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
14.9
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
14.8
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
14.7
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
14.7
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
14.6
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
14.6
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
14.6
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
14.5
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
14.5
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
14.5
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
14.5
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
14.2
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
14.2
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
14.1
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
14.0
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
14.0
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
13.8
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
13.7
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
13.7
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
13.6
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
13.6
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
13.5
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
13.5
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
13.5
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
13.5
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
13.5
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
13.4
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
13.4
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
13.4
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
13.3
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
13.3
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
13.3
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
13.3
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
13.2
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
13.2
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
13.2
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
13.1
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
13.1
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
13.1
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
13.0
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
13.0
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
13.0
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
12.9
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
12.8
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
12.8
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
12.7
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
12.7
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
12.7
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
12.6
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
12.5
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
12.3
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
12.3
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
12.3
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
12.3
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
12.2
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
12.2
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
12.0
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
12.0
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
12.0
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
12.0
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
11.8
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
11.8
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
11.7
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
11.6
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
11.6
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
11.6
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
11.6
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
11.5
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
11.5
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
11.5
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
11.5
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
11.5
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
11.4
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
11.4
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
11.4
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
11.3
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
11.3
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
11.2
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
11.2
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
11.2
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
11.2
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
11.2
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
11.2
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
11.1
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
11.1
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
11.0
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
10.9
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
10.9
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
10.9
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
10.8
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
10.8
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
10.7
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
10.7
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
10.7
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
10.6
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
10.5
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
10.5
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
10.5
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
10.4
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
10.3
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
10.3
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
10.2
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
10.1
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
10.0
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
9.9
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
9.9
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
9.8
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
9.8
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
9.6
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
9.6
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
9.6
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
9.5
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
9.4
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
9.4
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
9.4
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
9.2
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
9.2
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
9.0
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
9.0
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
9.0
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
9.0
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
8.9
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
8.9
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
8.8
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
8.7
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
8.7
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
8.7
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
8.7
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
8.5
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
8.4
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
8.4
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
8.3
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
8.2
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
8.2
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
8.1
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
8.0
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
8.0
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
8.0
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
8.0
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
7.9
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
7.9
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
7.9
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
7.7
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
7.6
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
7.6
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
7.6
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
7.5
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
7.4
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
7.4
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
7.3
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
7.3
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
7.3
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
7.2
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
7.2
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
7.0
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
6.9
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
6.8
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
6.8
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
6.7
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
6.6
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
6.5
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
6.5
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
6.4
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
6.4
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
6.4
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
6.3
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
6.2
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
6.2
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
6.1
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
6.1
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
6.0
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
6.0
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
5.8
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
5.8
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
5.6
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
5.5
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
5.4
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
5.4
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
5.3
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
5.3
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
5.2
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
5.1
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
5.0
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
4.9
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
4.7
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
4.7
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
4.5
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
4.4
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
4.4
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
4.3
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
4.2
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
4.2
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
4.2
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
4.1
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
4.0
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
4.0
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
3.9
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
3.8
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
3.8
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
3.7
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
3.5
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
3.5
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
3.5
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
3.5
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
3.2
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
3.1
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
2.9
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
2.9
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
2.8
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
2.7
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
2.0
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
LSM14B is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
14.0
Number of samples
231
Samples
Sample
Description
TPM
DO45217
0 years, female, NA, stage:3, dead, 270 days
49.3
DO45127
0 years, male, NA, stage:3, dead, 420 days
48.8
DO45301
0 years, male, NA, stage:2, dead, 1440 days
38.0
DO50799
0 years, female, NA, stage:2, alive, 540 days
37.7
DO45209
0 years, male, NA, stage:4, alive, 1350 days
37.6
DO45131
0 years, male, NA, stage:4, dead, 360 days
35.0
DO23513
0 years, male, NA, stage:3, alive, 1200 days
30.8
DO50815
0 years, male, NA, stage:3, alive, 150 days
29.4
DO23552
0 years, female, NA, stage:1, alive, 810 days
28.5
DO45275
0 years, male, NA, stage:3, dead, 10 days
27.8
DO45259
0 years, male, NA, stage:3, alive, 330 days
26.7
DO23534
0 years, male, NA, stage:2, alive, 840 days
26.5
DO23526
0 years, male, NA, stage:3, alive, 1050 days
24.7
DO48732
0 years, male, NA, stage:3, alive, 630 days
24.7
DO45193
0 years, female, NA, stage:4, dead, 120 days
24.4
DO45155
0 years, male, NA, stage:2, alive, 2160 days
24.3
DO45287
0 years, male, NA, stage:1, alive, 390 days
24.2
DO50809
0 years, male, NA, stage:3, dead, 720 days
24.1
DO23515
0 years, male, NA, stage:2, alive, 1230 days
23.7
DO45257
0 years, male, NA, stage:3, alive, 810 days
22.9
DO45305
0 years, male, NA, stage:4, alive, 300 days
22.9
DO45185
0 years, male, NA, stage:2, alive, 600 days
21.8
DO23537
0 years, male, NA, stage:2, dead, 900 days
21.6
DO50840
0 years, male, NA, stage:2, alive, 330 days
21.4
DO45263
0 years, male, NA, stage:3, dead, 270 days
21.3
DO45267
0 years, male, NA, stage:3, dead, 570 days
20.8
DO50791
0 years, female, NA, stage:1, dead, 480 days
20.7
DO48746
0 years, male, NA, stage:3, alive, 570 days
20.3
DO48757
0 years, female, NA, stage:3, alive, 480 days
20.2
DO45145
0 years, male, NA, stage:3, dead, 60 days
20.1
DO45207
0 years, male, NA, stage:1, alive, 1050 days
20.0
DO48737
0 years, male, NA, stage:1, alive, 720 days
19.6
DO50844
0 years, male, NA, stage:4, alive, 300 days
19.4
DO45189
0 years, female, NA, stage:2, alive, 1200 days
19.3
DO48681
0 years, male, NA, stage:2, alive, 900 days
19.2
DO45205
0 years, female, NA, stage:2, dead, 90 days
19.2
DO45277
0 years, male, NA, stage:3, alive, 600 days
18.8
DO23528
0 years, female, NA, stage:2, alive, 1020 days
18.5
DO45219
0 years, male, NA, stage:2, alive, 1080 days
18.5
DO23532
0 years, female, NA, stage:1, alive, 960 days
18.4
DO23519
0 years, male, NA, stage:3, alive, 630 days
18.2
DO50855
0 years, male, NA, stage:2, alive, 570 days
18.0
DO23540
0 years, male, NA, stage:1, alive, 750 days
17.7
DO48677
0 years, male, NA, stage:3, alive, 1140 days
17.6
DO23549
0 years, male, NA, stage:3, alive, 990 days
17.6
DO50802
0 years, male, NA, stage:2, alive, 930 days
17.6
DO45281
0 years, male, NA, stage:4, alive, 750 days
17.6
DO45303
0 years, female, NA, stage:3, alive, 990 days
17.5
DO45113
0 years, male, NA, stage:3, alive, 1560 days
17.2
DO45273
0 years, male, NA, stage:2, alive, 480 days
17.2
DO45091
0 years, male, NA, stage:2, dead, 1320 days
17.2
DO45283
0 years, male, NA, stage:3, alive, 510 days
17.1
DO50832
0 years, male, NA, stage:3, alive, 90 days
17.0
DO23512
0 years, male, NA, stage:1, alive, 1260 days
16.9
DO45307
0 years, female, NA, stage:4, dead, 240 days
16.9
DO45211
0 years, male, NA, stage:3, alive, 240 days
16.8
DO45097
0 years, male, NA, stage:3, alive, 1620 days
16.7
DO45265
0 years, male, NA, stage:3, alive, 1020 days
16.7
DO45213
0 years, male, NA, stage:1, alive, 1200 days
16.6
DO50817
0 years, male, NA, stage:2, alive, 390 days
16.5
DO45092
0 years, male, NA, stage:4, dead, 1200 days
16.4
DO48697
0 years, female, NA, stage:2, dead, 810 days
16.2
DO23509
0 years, male, NA, stage:3, dead, 780 days
16.0
DO23524
0 years, female, NA, stage:2, alive, 1050 days
16.0
DO48736
0 years, female, NA, stage:1, alive, 600 days
15.9
DO45299
0 years, female, NA, stage:1, alive, 1440 days
15.8
DO23545
0 years, male, NA, stage:2, dead, 570 days
15.7
DO48730
0 years, female, NA, stage:2, alive, 630 days
15.7
DO45245
0 years, female, NA, stage:2, dead, 240 days
15.7
DO23543
0 years, male, NA, stage:2, alive, 1020 days
15.6
DO23548
0 years, female, NA, stage:1, alive, 840 days
15.4
DO23525
0 years, male, NA, stage:4, alive, 1050 days
15.4
DO45253
0 years, male, NA, stage:2, alive, 870 days
15.3
DO48712
0 years, male, NA, stage:2, alive, 810 days
15.3
DO45093
0 years, male, NA, stage:2, dead, 720 days
15.2
DO45179
0 years, female, NA, stage:2, alive, 600 days
15.0
DO48706
0 years, male, NA, stage:2, alive, 870 days
15.0
DO50787
0 years, male, NA, stage:3, alive, 480 days
15.0
DO45125
0 years, male, NA, stage:3, alive, 1680 days
14.9
DO45119
0 years, male, NA, stage:3, dead, 510 days
14.8
DO45187
0 years, female, NA, stage:1, alive, 1260 days
14.8
DO45237
0 years, male, NA, stage:2, alive, 900 days
14.7
DO45225
0 years, male, NA, stage:1, alive, 1050 days
14.7
DO45269
0 years, male, NA, stage:3, alive, 750 days
14.7
DO48721
0 years, female, NA, stage:1, alive, 900 days
14.6
DO45255
0 years, male, NA, stage:3, alive, 720 days
14.6
DO45141
0 years, male, NA, stage:2, alive, 1320 days
14.4
DO23510
0 years, female, NA, stage:2, alive, 870 days
14.4
DO48719
0 years, male, NA, stage:2, alive, 690 days
14.3
DO23516
0 years, male, NA, stage:3, dead, 20 days
14.3
DO23535
0 years, male, NA, stage:1, alive, 960 days
14.2
DO23521
0 years, male, NA, stage:3, alive, 1110 days
14.1
DO50806
0 years, male, NA, stage:4, alive, 540 days
13.9
DO45117
0 years, female, NA, stage:2, dead, 1110 days
13.9
DO23539
0 years, male, NA, stage:1, alive, 1110 days
13.8
DO45139
0 years, male, NA, stage:3, alive, 1320 days
13.8
DO45105
0 years, male, NA, stage:1, alive, 1680 days
13.8
DO45153
0 years, female, NA, stage:2, alive, 1380 days
13.8
DO45297
0 years, female, NA, stage:4, dead, 1260 days
13.8
DO45103
0 years, male, NA, stage:3, alive, 450 days
13.7
DO50816
0 years, male, NA, stage:2, alive, 390 days
13.6
DO45289
0 years, female, NA, stage:3, alive, 360 days
13.6
DO48720
0 years, female, NA, stage:2, alive, 570 days
13.6
DO48728
0 years, female, NA, stage:2, alive, 150 days
13.5
DO50783
0 years, male, NA, stage:3, alive, 480 days
13.4
DO48717
0 years, male, NA, stage:4, dead, 180 days
13.4
DO50820
0 years, female, NA, stage:3, alive, 510 days
13.3
DO45107
0 years, female, NA, stage:2, alive, 1710 days
13.3
DO50778
0 years, male, NA, stage:4, alive, 630 days
13.2
DO45239
0 years, male, NA, stage:2, alive, 870 days
13.2
DO23514
0 years, male, NA, stage:2, alive, 1290 days
13.2
DO45161
0 years, male, NA, stage:2, dead, 540 days
13.2
DO45133
0 years, male, NA, stage:3, dead, 660 days
13.1
DO45121
0 years, male, NA, stage:3, alive, 1530 days
13.1
DO45183
0 years, female, NA, stage:2, dead, 570 days
13.0
DO48723
0 years, male, NA, stage:1, alive, 600 days
12.9
DO23542
0 years, male, NA, stage:3, alive, 960 days
12.8
DO48679
0 years, male, NA, stage:2, alive, 1200 days
12.8
DO23533
0 years, male, NA, stage:2, alive, 900 days
12.6
DO45229
0 years, male, NA, stage:1, alive, 990 days
12.5
DO23523
0 years, male, NA, stage:3, alive, 1080 days
12.5
DO45099
0 years, male, NA, stage:3, alive, 1590 days
12.5
DO45249
0 years, male, NA, stage:1, alive, 630 days
12.4
DO45159
0 years, male, NA, stage:3, alive, 1470 days
12.4
DO50857
0 years, male, NA, stage:2, alive, 210 days
12.3
DO48672
0 years, male, NA, stage:2, alive, 450 days
12.3
DO50804
0 years, male, NA, stage:2, alive, 720 days
12.0
DO48715
0 years, female, NA, stage:2, dead, 690 days
12.0
DO50819
0 years, female, NA, stage:2, alive, 510 days
12.0
DO48716
0 years, male, NA, stage:2, alive, 720 days
12.0
DO45241
0 years, male, NA, stage:1, alive, 1080 days
12.0
DO50825
0 years, male, NA, stage:2, alive, 390 days
11.9
DO45227
0 years, female, NA, stage:2, alive, 1020 days
11.9
DO23518
0 years, male, NA, stage:2, alive, 1320 days
11.9
DO45279
0 years, male, NA, stage:3, alive, 1290 days
11.8
DO45235
0 years, female, NA, stage:1, alive, 900 days
11.7
DO48701
0 years, male, NA, stage:2, alive, 780 days
11.7
DO45201
0 years, male, NA, stage:1, alive, 900 days
11.7
DO50811
0 years, male, NA, stage:1, alive, 450 days
11.6
DO23511
0 years, female, NA, stage:3, dead, 180 days
11.4
DO48743
0 years, female, NA, stage:2, alive, 570 days
11.3
DO50859
0 years, male, NA, stage:2, alive, 180 days
11.3
DO23547
0 years, male, NA, stage:1, alive, 1020 days
11.2
DO45163
0 years, male, NA, stage:2, alive, 960 days
11.0
DO23546
0 years, male, NA, stage:2, alive, 1050 days
11.0
DO45157
0 years, male, NA, stage:2, alive, 1980 days
11.0
DO45251
0 years, female, NA, stage:2, alive, 900 days
10.9
DO48725
0 years, male, NA, stage:1, alive, 780 days
10.9
DO45247
0 years, female, NA, stage:2, alive, 210 days
10.9
DO50807
0 years, male, NA, stage:1, alive, 540 days
10.8
DO45221
0 years, female, NA, stage:4, dead, 390 days
10.8
DO48741
0 years, male, NA, stage:3, alive, 240 days
10.7
DO45191
0 years, female, NA, stage:2, alive, 1200 days
10.7
DO45149
0 years, female, NA, stage:2, alive, 1260 days
10.6
DO45115
0 years, male, NA, stage:2, alive, 840 days
10.6
DO45223
0 years, male, NA, stage:4, alive, 1020 days
10.6
DO48751
0 years, male, NA, stage:2, dead, 480 days
10.6
DO50798
0 years, male, NA, stage:3, dead, 30 days
10.6
DO45243
0 years, female, NA, stage:3, alive, 930 days
10.5
DO45137
0 years, male, NA, stage:1, alive, 1320 days
10.5
DO50774
0 years, female, NA, stage:2, alive, 720 days
10.3
DO45203
0 years, female, NA, stage:2, alive, 1170 days
10.2
DO48695
0 years, male, NA, stage:2, alive, 720 days
10.2
DO45096
0 years, male, NA, stage:2, dead, 1290 days
10.1
DO48682
0 years, female, NA, stage:3, dead, 120 days
10.1
DO50818
0 years, male, NA, stage:2, alive, 510 days
10.1
DO50822
0 years, male, NA, stage:2, alive, 510 days
10.0
DO45199
0 years, female, NA, stage:2, alive, 1350 days
10.0
DO50800
0 years, male, NA, stage:2, alive, 510 days
10.0
DO50845
0 years, male, NA, stage:3, alive, 210 days
10.0
DO50793
0 years, male, NA, stage:4, alive, 540 days
9.9
DO23538
0 years, male, NA, stage:2, alive, 450 days
9.9
DO45173
0 years, male, NA, stage:3, alive, 1170 days
9.9
DO45171
0 years, male, NA, stage:3, alive, 600 days
9.8
DO45285
0 years, male, NA, stage:3, alive, 480 days
9.8
DO23529
0 years, male, NA, stage:4, alive, 930 days
9.7
DO23536
0 years, male, NA, stage:2, alive, 930 days
9.7
DO48700
0 years, female, NA, stage:2, alive, 810 days
9.7
DO45181
0 years, female, NA, stage:2, alive, 1200 days
9.7
DO45165
0 years, male, NA, stage:2, alive, 690 days
9.5
DO45123
0 years, female, NA, stage:2, dead, 570 days
9.5
DO50813
0 years, male, NA, stage:2, alive, 420 days
9.5
DO45101
0 years, male, NA, stage:2, alive, 1680 days
9.5
DO48759
0 years, male, NA, stage:3, alive, 720 days
9.4
DO48693
0 years, male, NA, stage:2, alive, 900 days
9.4
DO45231
0 years, male, NA, stage:2, alive, 930 days
9.4
DO45095
0 years, male, NA, stage:2, alive, 1620 days
9.3
DO45135
0 years, male, NA, stage:1, alive, 1410 days
9.1
DO50803
0 years, female, NA, stage:1, alive, 540 days
9.1
DO45233
0 years, male, NA, stage:3, alive, 900 days
9.0
DO45215
0 years, male, NA, stage:2, alive, 1170 days
9.0
DO23550
0 years, male, NA, stage:1, alive, 990 days
8.9
DO23508
0 years, female, NA, stage:2, alive, 390 days
8.7
DO50829
0 years, male, NA, stage:3, alive, 570 days
8.7
DO45094
0 years, male, NA, stage:3, alive, 1650 days
8.7
DO45261
0 years, male, NA, stage:3, alive, 990 days
8.5
DO23530
0 years, male, NA, stage:4, dead, 180 days
8.3
DO50785
0 years, male, NA, stage:4, dead, 90 days
8.3
DO45177
0 years, female, NA, stage:3, alive, 1260 days
8.2
DO48727
0 years, female, NA, stage:2, dead, 390 days
8.2
DO50814
0 years, male, NA, stage:3, alive, 420 days
8.2
DO45143
0 years, male, NA, stage:3, alive, 1290 days
8.2
DO48704
0 years, female, NA, stage:3, alive, 750 days
8.2
DO23541
0 years, male, NA, stage:2, alive, 930 days
8.0
DO48733
0 years, male, NA, stage:2, alive, 600 days
8.0
DO50808
0 years, male, NA, stage:2, alive, 570 days
7.7
DO48761
0 years, male, NA, stage:2, alive, 870 days
7.6
DO50789
0 years, female, NA, stage:2, alive, 570 days
7.4
DO23531
0 years, female, NA, stage:3, alive, 900 days
7.4
DO23527
0 years, male, NA, stage:1, alive, 1050 days
7.3
DO45129
0 years, male, NA, stage:3, alive, 1470 days
7.3
DO50776
0 years, male, NA, stage:1, alive, 690 days
7.3
DO50850
0 years, male, NA, stage:3, alive, 720 days
6.9
DO45111
0 years, male, NA, stage:2, alive, 1590 days
6.8
DO48742
0 years, male, NA, stage:2, alive, 600 days
6.6
DO48760
0 years, female, NA, stage:2, alive, 690 days
6.6
DO45175
0 years, male, NA, stage:2, alive, 1140 days
6.6
DO227643
0 years, male, NA, stage:2, alive, 1260 days
6.5
DO45169
0 years, male, NA, stage:3, alive, 1350 days
6.5
DO45167
0 years, male, NA, stage:2, dead, 1440 days
6.5
DO23517
0 years, male, NA, stage:2, alive, 1200 days
6.4
DO48747
0 years, male, NA, stage:3, alive, 540 days
6.2
DO50839
0 years, female, NA, stage:3, alive, 330 days
6.2
DO45109
0 years, male, NA, stage:2, alive, 1590 days
5.9
DO45197
0 years, male, NA, stage:2, alive, 1170 days
5.7
DO227801
0 years, female, NA, stage:1, alive, 660 days
5.4
DO50805
0 years, male, NA, stage:2, alive, 690 days
5.4
DO23544
0 years, male, NA, stage:2, alive, 960 days
5.2
DO48674
0 years, male, NA, stage:2, alive, 1260 days
5.0
DO23551
0 years, male, NA, stage:3, dead, 150 days
4.9
DO45195
0 years, male, NA, stage:1, alive, 390 days
4.0
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
385
Tumor
1.2
671
Tumor
1.2
951
Tumor
1.2
283
Tumor
1.1
743
Tumor
1.0
535
Tumor
0.9
351
Tumor
0.9
943
Tumor
0.9
331
Tumor
0.8
545
Tumor
0.8
445
Tumor
0.8
815
Tumor
0.6
1027
Tumor
0.6
957
Tumor
0.5
357
Tumor
0.5
553
Tumor
0.5
1041
Tumor
0.5
497
Tumor
0.5
647
Tumor
0.5
877
Tumor
0.5
313
Tumor
0.5
817
Tumor
0.5
483
Tumor
0.5
984
Normal
0.5
481
Tumor
0.5
1015
Tumor
0.4
865
Tumor
0.4
536
Normal
0.4
425
Tumor
0.4
977
Tumor
0.4
1013
Tumor
0.4
257
Tumor
0.4
661
Tumor
0.4
713
Tumor
0.4
493
Tumor
0.4
727
Tumor
0.4
363
Tumor
0.4
953
Tumor
0.4
981
Tumor
0.4
851
Tumor
0.4
917
Tumor
0.4
1028
Normal
0.4
328
Normal
0.4
923
Tumor
0.4
983
Tumor
0.4
435
Tumor
0.3
517
Tumor
0.3
982
Normal
0.3
554
Normal
0.3
1014
Normal
0.3
715
Tumor
0.3
737
Tumor
0.3
364
Normal
0.3
1043
Tumor
0.3
955
Tumor
0.3
695
Tumor
0.3
878
Normal
0.3
967
Tumor
0.3
447
Tumor
0.3
484
Normal
0.3
741
Tumor
0.3
327
Tumor
0.3
1032
Normal
0.3
131
Tumor
0.3
171
Tumor
0.3
1022
Normal
0.3
473
Tumor
0.2
448
Normal
0.2
147
Tumor
0.2
1042
Normal
0.2
915
Tumor
0.2
211
Tumor
0.2
1046
Normal
0.2
465
Tumor
0.2
954
Normal
0.2
745
Tumor
0.2
498
Normal
0.2
524
Normal
0.2
918
Normal
0.2
924
Normal
0.2
1016
Normal
0.2
1045
Tumor
0.2
1026
Normal
0.2
387
Tumor
0.2
922
Normal
0.2
412
Normal
0.2
714
Normal
0.2
534
Normal
0.2
742
Normal
0.2
944
Normal
0.2
471
Tumor
0.2
863
Tumor
0.2
472
Normal
0.2
696
Normal
0.2
744
Normal
0.2
722
Normal
0.2
938
Normal
0.2
572
Normal
0.2
921
Tumor
0.2
916
Normal
0.2
884
Normal
0.2
698
Normal
0.2
217
Tumor
0.2
746
Normal
0.2
864
Normal
0.2
912
Normal
0.2
868
Normal
0.2
716
Normal
0.2
355
Tumor
0.1
415
Tumor
0.1
738
Normal
0.1
862
Normal
0.1
513
Tumor
0.1
728
Normal
0.1
786
Normal
0.1
866
Normal
0.1
528
Normal
0.1
492
Normal
0.1
818
Normal
0.1
926
Normal
0.1
1031
Tumor
0.1
882
Normal
0.1
538
Normal
0.1
914
Normal
0.1
823
Tumor
0.1
433
Tumor
0.1
161
Tumor
0.1
952
Normal
0.1
965
Tumor
0.1
958
Normal
0.1
488
Normal
0.1
546
Normal
0.1
112
Tumor
0.1
978
Normal
0.1
635
Tumor
0.1
431
Tumor
0.1
474
Normal
0.1
367
Tumor
0.1
162
Normal
0.1
1044
Normal
0.1
573
Tumor
0.1
755
Tumor
0.1
724
Normal
0.1
558
Normal
0.1
444
Normal
0.1
976
Normal
0.1
956
Normal
0.1
813
Tumor
0.1
188
Normal
0.1
964
Normal
0.1
665
Tumor
0.1
525
Tumor
0.1
228
Normal
0.1
411
Tumor
0.1
467
Tumor
0.1
478
Normal
0.1
187
Tumor
0.1
1021
Tumor
0.1
911
Tumor
0.1
516
Normal
0.1
477
Tumor
0.1
356
Normal
0.0
663
Tumor
0.0
721
Tumor
0.0
468
Normal
0.0
824
Normal
0.0
416
Normal
0.0
975
Tumor
0.0
127
Tumor
0.0
391
Tumor
0.0
1025
Tumor
0.0
874
Normal
0.0
966
Normal
0.0
428
Normal
0.0
142
Normal
0.0
816
Normal
0.0
482
Normal
0.0
148
Normal
0.0
191
Tumor
0.0
526
Normal
0.0
427
Tumor
0.0
873
Tumor
0.0
494
Normal
0.0
172
Normal
0.0
778
Normal
0.0
284
Normal
0.0
527
Tumor
0.0
446
Normal
0.0
723
Tumor
0.0
852
Normal
0.0
686
Normal
0.0
518
Normal
0.0
861
Tumor
0.0
456
Normal
0.0
395
Tumor
0.0
628
Normal
0.0
362
Normal
0.0
697
Tumor
0.0
968
Normal
0.0
443
Tumor
0.0
756
Normal
0.0
213
Tumor
0.0
785
Tumor
0.0
192
Normal
0.0
224
Normal
0.0
514
Normal
0.0
222
Normal
0.0
666
Normal
0.0
343
Tumor
0.0
286
Normal
0.0
424
Normal
0.0
925
Tumor
0.0
451
Tumor
0.0
232
Normal
0.0
221
Tumor
0.0
436
Normal
0.0
883
Tumor
0.0
462
Normal
0.0
137
Tumor
0.0
278
Normal
0.0
636
Normal
0.0
672
Normal
0.0
196
Normal
0.0
388
Normal
-0.1
564
Normal
-0.1
311
Tumor
-0.1
452
Normal
-0.1
537
Tumor
-0.1
466
Normal
-0.1
352
Normal
-0.1
491
Tumor
-0.1
384
Normal
-0.1
563
Tumor
-0.1
268
Normal
-0.1
662
Normal
-0.1
214
Normal
-0.1
186
Normal
-0.1
858
Normal
-0.1
814
Normal
-0.1
135
Tumor
-0.1
434
Normal
-0.1
136
Normal
-0.1
648
Normal
-0.1
145
Tumor
-0.1
937
Tumor
-0.1
557
Tumor
-0.1
396
Normal
-0.1
368
Normal
-0.1
568
Normal
-0.1
515
Tumor
-0.1
881
Tumor
-0.1
218
Normal
-0.1
128
Normal
-0.1
618
Normal
-0.1
574
Normal
-0.1
394
Normal
-0.1
627
Tumor
-0.1
464
Normal
-0.1
426
Normal
-0.1
685
Tumor
-0.1
392
Normal
-0.1
185
Tumor
-0.1
195
Tumor
-0.1
138
Normal
-0.1
261
Tumor
-0.1
523
Tumor
-0.1
664
Normal
-0.2
231
Tumor
-0.2
212
Normal
-0.2
432
Normal
-0.2
258
Normal
-0.2
777
Tumor
-0.2
314
Normal
-0.2
312
Normal
-0.2
298
Normal
-0.2
297
Tumor
-0.2
386
Normal
-0.2
376
Normal
-0.2
123
Tumor
-0.2
141
Tumor
-0.2
272
Normal
-0.2
342
Normal
-0.2
642
Normal
-0.2
461
Tumor
-0.2
146
Normal
-0.2
414
Normal
-0.2
413
Tumor
-0.2
615
Tumor
-0.2
393
Tumor
-0.2
332
Normal
-0.2
616
Normal
-0.2
422
Normal
-0.2
567
Tumor
-0.2
455
Tumor
-0.2
857
Tumor
-0.2
354
Normal
-0.3
617
Tumor
-0.3
285
Tumor
-0.3
262
Normal
-0.3
365
Tumor
-0.3
114
Normal
-0.3
366
Normal
-0.3
126
Normal
-0.3
124
Normal
-0.3
867
Tumor
-0.3
358
Normal
-0.3
463
Tumor
-0.3
277
Tumor
-0.3
641
Tumor
-0.3
111
Normal
-0.3
132
Normal
-0.3
913
Tumor
-0.3
423
Tumor
-0.4
533
Tumor
-0.4
487
Tumor
-0.4
267
Tumor
-0.4
344
Normal
-0.4
341
Tumor
-0.4
421
Tumor
-0.4
125
Tumor
-0.4
271
Tumor
-0.5
223
Tumor
-0.5
113
Tumor
-0.5
375
Tumor
-0.5
383
Tumor
-0.6
361
Tumor
-0.6
963
Tumor
-0.6
227
Tumor
-0.6
353
Tumor
-0.7
571
Tumor
-0.8
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
