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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
MPZL2 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
11.5
Number of samples
362
Samples
Sample
Description
TPM
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
107.2
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
89.9
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
79.2
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
73.3
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
62.3
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
54.3
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
51.8
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
44.3
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
42.1
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
33.8
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
33.5
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
33.5
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
32.3
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
32.3
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
31.7
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
31.3
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
30.2
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
29.6
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
29.6
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
29.3
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
28.1
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
27.5
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
27.3
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
27.1
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
26.7
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
26.2
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
26.1
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
25.8
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
25.4
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
25.4
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
25.2
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
25.2
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
24.8
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
24.7
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
24.6
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
24.0
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
23.9
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
23.7
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
22.2
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
21.9
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
21.7
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
21.6
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
21.0
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
20.9
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
20.8
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
20.8
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
20.2
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
20.2
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
20.0
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
19.6
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
19.3
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
19.0
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
18.8
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
18.7
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
18.7
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
18.5
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
18.4
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
18.2
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
17.7
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
17.7
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
17.4
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
17.4
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
17.3
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
17.0
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
16.6
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
16.5
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
16.4
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
16.3
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
16.0
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
15.9
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
15.9
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
15.9
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
15.8
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
15.7
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
15.6
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
15.5
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
15.4
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
15.3
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
15.3
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
15.0
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
14.8
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
14.7
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
14.6
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
14.6
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
14.4
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
14.1
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
13.9
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
13.8
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
13.7
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
13.7
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
13.6
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
13.5
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
13.4
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
13.4
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
13.3
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
13.3
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
13.2
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
13.1
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
12.8
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
12.8
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
12.7
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
12.6
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
12.5
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
12.4
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
12.4
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
12.4
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
12.4
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
12.2
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
12.2
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
12.0
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
12.0
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
11.8
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
11.8
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
11.7
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
11.7
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
11.6
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
11.6
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
11.6
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
11.5
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
11.5
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
11.4
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
11.4
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
11.4
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
11.4
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
11.2
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
11.2
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
10.9
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
10.9
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
10.9
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
10.9
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
10.7
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
10.7
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
10.6
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
10.6
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
10.5
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
10.4
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
10.4
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
10.3
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
10.3
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
10.3
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
10.2
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
10.2
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
10.1
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
10.1
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
10.0
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
10.0
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
10.0
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
9.9
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
9.9
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
9.8
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
9.8
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
9.8
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
9.8
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
9.7
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
9.7
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
9.6
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
9.6
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
9.5
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
9.5
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
9.4
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
9.3
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
9.3
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
9.3
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
9.2
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
9.2
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
9.2
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
9.1
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
9.1
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
8.9
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
8.7
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
8.6
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
8.6
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
8.6
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
8.5
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
8.5
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
8.5
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
8.5
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
8.5
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
8.5
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
8.4
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
8.4
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
8.3
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
8.3
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
8.2
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
8.2
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
8.1
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
8.1
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
8.1
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
8.1
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
8.1
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
8.0
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
8.0
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
8.0
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
8.0
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
7.9
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
7.9
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
7.9
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
7.9
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
7.8
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
7.7
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
7.7
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
7.6
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
7.5
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
7.5
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
7.5
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
7.5
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
7.5
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
7.4
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
7.4
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
7.3
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
7.2
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
7.2
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
7.2
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
7.1
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
7.1
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
7.0
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
6.9
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
6.9
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
6.9
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
6.8
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
6.8
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
6.7
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
6.7
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
6.7
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
6.6
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
6.6
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
6.6
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
6.5
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
6.5
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
6.5
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
6.5
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
6.5
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
6.5
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
6.4
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
6.4
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
6.3
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
6.3
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
6.2
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
6.2
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
6.2
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
6.1
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
6.1
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
6.1
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
6.1
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
6.0
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
5.9
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
5.9
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
5.9
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
5.9
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
5.8
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
5.8
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
5.8
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
5.7
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
5.7
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
5.6
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
5.6
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
5.6
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
5.5
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
5.5
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
5.4
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
5.4
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
5.4
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
5.3
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
5.3
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
5.3
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
5.2
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
5.2
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
5.2
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
5.1
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
5.0
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
5.0
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
5.0
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
5.0
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
5.0
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
4.9
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
4.9
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
4.9
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
4.9
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
4.8
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
4.8
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
4.7
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
4.7
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
4.6
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
4.6
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
4.6
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
4.5
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
4.5
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
4.4
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
4.4
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
4.3
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
4.3
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
4.3
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
4.3
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
4.2
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
4.2
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
4.2
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
4.1
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
4.1
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
4.0
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
3.9
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
3.9
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
3.9
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
3.8
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
3.8
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
3.8
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
3.8
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
3.7
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
3.7
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
3.6
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
3.6
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
3.6
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
3.6
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
3.6
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
3.5
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
3.5
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
3.5
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
3.5
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
3.5
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
3.4
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
3.4
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
3.3
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
3.3
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
3.2
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
3.2
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
3.1
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
3.1
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
3.1
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
3.0
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
3.0
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
3.0
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
2.9
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
2.9
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
2.8
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
2.8
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
2.8
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
2.8
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
2.7
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
2.7
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
2.7
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
2.7
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
2.6
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
2.5
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
2.4
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
2.4
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
2.4
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
2.2
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
2.2
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
2.2
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
2.1
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
2.1
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
2.0
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
1.9
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
1.9
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
1.6
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
1.6
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
1.6
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
1.4
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
1.3
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
1.1
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
1.0
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
1.0
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
MPZL2 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
13.0
Number of samples
231
Samples
Sample
Description
TPM
DO45211
0 years, male, NA, stage:3, alive, 240 days
183.2
DO45245
0 years, female, NA, stage:2, dead, 240 days
139.1
DO45145
0 years, male, NA, stage:3, dead, 60 days
89.1
DO45279
0 years, male, NA, stage:3, alive, 1290 days
45.2
DO45183
0 years, female, NA, stage:2, dead, 570 days
45.1
DO45217
0 years, female, NA, stage:3, dead, 270 days
43.3
DO50820
0 years, female, NA, stage:3, alive, 510 days
36.9
DO45119
0 years, male, NA, stage:3, dead, 510 days
35.8
DO45227
0 years, female, NA, stage:2, alive, 1020 days
35.0
DO50855
0 years, male, NA, stage:2, alive, 570 days
34.6
DO45187
0 years, female, NA, stage:1, alive, 1260 days
34.2
DO45247
0 years, female, NA, stage:2, alive, 210 days
33.9
DO45251
0 years, female, NA, stage:2, alive, 900 days
30.6
DO45189
0 years, female, NA, stage:2, alive, 1200 days
29.8
DO45127
0 years, male, NA, stage:3, dead, 420 days
29.8
DO45205
0 years, female, NA, stage:2, dead, 90 days
29.2
DO50778
0 years, male, NA, stage:4, alive, 630 days
29.1
DO23515
0 years, male, NA, stage:2, alive, 1230 days
27.0
DO23524
0 years, female, NA, stage:2, alive, 1050 days
26.7
DO45179
0 years, female, NA, stage:2, alive, 600 days
25.7
DO48720
0 years, female, NA, stage:2, alive, 570 days
25.7
DO45223
0 years, male, NA, stage:4, alive, 1020 days
25.6
DO45209
0 years, male, NA, stage:4, alive, 1350 days
24.7
DO48723
0 years, male, NA, stage:1, alive, 600 days
24.5
DO45219
0 years, male, NA, stage:2, alive, 1080 days
24.5
DO45121
0 years, male, NA, stage:3, alive, 1530 days
23.4
DO45129
0 years, male, NA, stage:3, alive, 1470 days
22.8
DO45243
0 years, female, NA, stage:3, alive, 930 days
22.7
DO23529
0 years, male, NA, stage:4, alive, 930 days
22.0
DO48761
0 years, male, NA, stage:2, alive, 870 days
21.3
DO45135
0 years, male, NA, stage:1, alive, 1410 days
20.5
DO50789
0 years, female, NA, stage:2, alive, 570 days
20.0
DO45185
0 years, male, NA, stage:2, alive, 600 days
19.9
DO45297
0 years, female, NA, stage:4, dead, 1260 days
19.9
DO45096
0 years, male, NA, stage:2, dead, 1290 days
19.3
DO50793
0 years, male, NA, stage:4, alive, 540 days
18.6
DO50800
0 years, male, NA, stage:2, alive, 510 days
18.5
DO45261
0 years, male, NA, stage:3, alive, 990 days
18.4
DO45107
0 years, female, NA, stage:2, alive, 1710 days
18.4
DO45255
0 years, male, NA, stage:3, alive, 720 days
18.3
DO45289
0 years, female, NA, stage:3, alive, 360 days
18.1
DO45301
0 years, male, NA, stage:2, dead, 1440 days
17.9
DO23530
0 years, male, NA, stage:4, dead, 180 days
17.9
DO45123
0 years, female, NA, stage:2, dead, 570 days
17.8
DO48736
0 years, female, NA, stage:1, alive, 600 days
16.8
DO50832
0 years, male, NA, stage:3, alive, 90 days
16.7
DO45105
0 years, male, NA, stage:1, alive, 1680 days
16.7
DO45137
0 years, male, NA, stage:1, alive, 1320 days
16.6
DO45249
0 years, male, NA, stage:1, alive, 630 days
16.5
DO50806
0 years, male, NA, stage:4, alive, 540 days
16.1
DO45197
0 years, male, NA, stage:2, alive, 1170 days
16.1
DO50802
0 years, male, NA, stage:2, alive, 930 days
16.0
DO48681
0 years, male, NA, stage:2, alive, 900 days
15.1
DO45207
0 years, male, NA, stage:1, alive, 1050 days
14.8
DO23537
0 years, male, NA, stage:2, dead, 900 days
14.7
DO48701
0 years, male, NA, stage:2, alive, 780 days
14.7
DO45153
0 years, female, NA, stage:2, alive, 1380 days
14.5
DO45303
0 years, female, NA, stage:3, alive, 990 days
14.4
DO48727
0 years, female, NA, stage:2, dead, 390 days
14.2
DO50785
0 years, male, NA, stage:4, dead, 90 days
14.2
DO45263
0 years, male, NA, stage:3, dead, 270 days
14.2
DO23528
0 years, female, NA, stage:2, alive, 1020 days
14.2
DO45177
0 years, female, NA, stage:3, alive, 1260 days
14.0
DO23511
0 years, female, NA, stage:3, dead, 180 days
13.9
DO45265
0 years, male, NA, stage:3, alive, 1020 days
13.5
DO23552
0 years, female, NA, stage:1, alive, 810 days
13.4
DO50774
0 years, female, NA, stage:2, alive, 720 days
13.4
DO50850
0 years, male, NA, stage:3, alive, 720 days
13.3
DO45093
0 years, male, NA, stage:2, dead, 720 days
13.2
DO45239
0 years, male, NA, stage:2, alive, 870 days
13.2
DO48730
0 years, female, NA, stage:2, alive, 630 days
13.1
DO23521
0 years, male, NA, stage:3, alive, 1110 days
13.0
DO45233
0 years, male, NA, stage:3, alive, 900 days
13.0
DO50813
0 years, male, NA, stage:2, alive, 420 days
13.0
DO45131
0 years, male, NA, stage:4, dead, 360 days
12.7
DO45213
0 years, male, NA, stage:1, alive, 1200 days
12.7
DO45173
0 years, male, NA, stage:3, alive, 1170 days
12.5
DO23535
0 years, male, NA, stage:1, alive, 960 days
12.3
DO45165
0 years, male, NA, stage:2, alive, 690 days
12.3
DO45231
0 years, male, NA, stage:2, alive, 930 days
12.3
DO50819
0 years, female, NA, stage:2, alive, 510 days
12.1
DO45285
0 years, male, NA, stage:3, alive, 480 days
12.0
DO48716
0 years, male, NA, stage:2, alive, 720 days
11.8
DO48743
0 years, female, NA, stage:2, alive, 570 days
11.7
DO48728
0 years, female, NA, stage:2, alive, 150 days
11.6
DO45191
0 years, female, NA, stage:2, alive, 1200 days
11.5
DO23508
0 years, female, NA, stage:2, alive, 390 days
11.4
DO23527
0 years, male, NA, stage:1, alive, 1050 days
11.4
DO23545
0 years, male, NA, stage:2, dead, 570 days
11.3
DO45221
0 years, female, NA, stage:4, dead, 390 days
11.1
DO45275
0 years, male, NA, stage:3, dead, 10 days
11.0
DO48715
0 years, female, NA, stage:2, dead, 690 days
11.0
DO45103
0 years, male, NA, stage:3, alive, 450 days
10.7
DO48742
0 years, male, NA, stage:2, alive, 600 days
10.6
DO50808
0 years, male, NA, stage:2, alive, 570 days
10.6
DO45283
0 years, male, NA, stage:3, alive, 510 days
10.5
DO45117
0 years, female, NA, stage:2, dead, 1110 days
10.4
DO23510
0 years, female, NA, stage:2, alive, 870 days
10.4
DO45257
0 years, male, NA, stage:3, alive, 810 days
10.3
DO45259
0 years, male, NA, stage:3, alive, 330 days
10.2
DO23523
0 years, male, NA, stage:3, alive, 1080 days
10.2
DO50787
0 years, male, NA, stage:3, alive, 480 days
9.8
DO50815
0 years, male, NA, stage:3, alive, 150 days
9.7
DO45092
0 years, male, NA, stage:4, dead, 1200 days
9.7
DO48746
0 years, male, NA, stage:3, alive, 570 days
9.6
DO45159
0 years, male, NA, stage:3, alive, 1470 days
9.4
DO45305
0 years, male, NA, stage:4, alive, 300 days
9.3
DO45113
0 years, male, NA, stage:3, alive, 1560 days
9.3
DO45241
0 years, male, NA, stage:1, alive, 1080 days
9.3
DO50825
0 years, male, NA, stage:2, alive, 390 days
9.3
DO48706
0 years, male, NA, stage:2, alive, 870 days
9.2
DO45273
0 years, male, NA, stage:2, alive, 480 days
9.2
DO23526
0 years, male, NA, stage:3, alive, 1050 days
9.2
DO45167
0 years, male, NA, stage:2, dead, 1440 days
9.2
DO23539
0 years, male, NA, stage:1, alive, 1110 days
9.0
DO48741
0 years, male, NA, stage:3, alive, 240 days
9.0
DO45267
0 years, male, NA, stage:3, dead, 570 days
8.9
DO48712
0 years, male, NA, stage:2, alive, 810 days
8.8
DO50805
0 years, male, NA, stage:2, alive, 690 days
8.8
DO48704
0 years, female, NA, stage:3, alive, 750 days
8.7
DO48682
0 years, female, NA, stage:3, dead, 120 days
8.6
DO50791
0 years, female, NA, stage:1, dead, 480 days
8.5
DO23531
0 years, female, NA, stage:3, alive, 900 days
8.5
DO23514
0 years, male, NA, stage:2, alive, 1290 days
8.4
DO23536
0 years, male, NA, stage:2, alive, 930 days
8.3
DO48733
0 years, male, NA, stage:2, alive, 600 days
8.3
DO45115
0 years, male, NA, stage:2, alive, 840 days
8.3
DO45193
0 years, female, NA, stage:4, dead, 120 days
8.3
DO45175
0 years, male, NA, stage:2, alive, 1140 days
8.2
DO45281
0 years, male, NA, stage:4, alive, 750 days
8.2
DO50776
0 years, male, NA, stage:1, alive, 690 days
8.0
DO23538
0 years, male, NA, stage:2, alive, 450 days
8.0
DO45201
0 years, male, NA, stage:1, alive, 900 days
7.8
DO50829
0 years, male, NA, stage:3, alive, 570 days
7.8
DO48697
0 years, female, NA, stage:2, dead, 810 days
7.6
DO45253
0 years, male, NA, stage:2, alive, 870 days
7.6
DO45139
0 years, male, NA, stage:3, alive, 1320 days
7.4
DO45094
0 years, male, NA, stage:3, alive, 1650 days
7.4
DO23540
0 years, male, NA, stage:1, alive, 750 days
7.4
DO48725
0 years, male, NA, stage:1, alive, 780 days
7.4
DO48759
0 years, male, NA, stage:3, alive, 720 days
7.4
DO50811
0 years, male, NA, stage:1, alive, 450 days
7.3
DO45125
0 years, male, NA, stage:3, alive, 1680 days
7.3
DO45225
0 years, male, NA, stage:1, alive, 1050 days
7.3
DO45195
0 years, male, NA, stage:1, alive, 390 days
7.2
DO48719
0 years, male, NA, stage:2, alive, 690 days
7.2
DO50857
0 years, male, NA, stage:2, alive, 210 days
7.1
DO45181
0 years, female, NA, stage:2, alive, 1200 days
7.1
DO45101
0 years, male, NA, stage:2, alive, 1680 days
7.0
DO45269
0 years, male, NA, stage:3, alive, 750 days
7.0
DO50822
0 years, male, NA, stage:2, alive, 510 days
7.0
DO23542
0 years, male, NA, stage:3, alive, 960 days
7.0
DO50809
0 years, male, NA, stage:3, dead, 720 days
6.9
DO23534
0 years, male, NA, stage:2, alive, 840 days
6.9
DO23517
0 years, male, NA, stage:2, alive, 1200 days
6.7
DO45143
0 years, male, NA, stage:3, alive, 1290 days
6.5
DO45215
0 years, male, NA, stage:2, alive, 1170 days
6.5
DO48732
0 years, male, NA, stage:3, alive, 630 days
6.4
DO50799
0 years, female, NA, stage:2, alive, 540 days
6.4
DO48679
0 years, male, NA, stage:2, alive, 1200 days
6.3
DO227801
0 years, female, NA, stage:1, alive, 660 days
6.3
DO45203
0 years, female, NA, stage:2, alive, 1170 days
6.3
DO48717
0 years, male, NA, stage:4, dead, 180 days
6.3
DO50807
0 years, male, NA, stage:1, alive, 540 days
6.2
DO48721
0 years, female, NA, stage:1, alive, 900 days
6.2
DO45155
0 years, male, NA, stage:2, alive, 2160 days
6.2
DO48751
0 years, male, NA, stage:2, dead, 480 days
6.1
DO45141
0 years, male, NA, stage:2, alive, 1320 days
6.1
DO23532
0 years, female, NA, stage:1, alive, 960 days
6.0
DO50845
0 years, male, NA, stage:3, alive, 210 days
6.0
DO48760
0 years, female, NA, stage:2, alive, 690 days
6.0
DO23548
0 years, female, NA, stage:1, alive, 840 days
6.0
DO45171
0 years, male, NA, stage:3, alive, 600 days
6.0
DO48672
0 years, male, NA, stage:2, alive, 450 days
5.7
DO45199
0 years, female, NA, stage:2, alive, 1350 days
5.7
DO45307
0 years, female, NA, stage:4, dead, 240 days
5.6
DO23541
0 years, male, NA, stage:2, alive, 930 days
5.6
DO45163
0 years, male, NA, stage:2, alive, 960 days
5.4
DO50844
0 years, male, NA, stage:4, alive, 300 days
5.4
DO45235
0 years, female, NA, stage:1, alive, 900 days
5.3
DO48757
0 years, female, NA, stage:3, alive, 480 days
5.3
DO45111
0 years, male, NA, stage:2, alive, 1590 days
5.2
DO23550
0 years, male, NA, stage:1, alive, 990 days
5.2
DO23518
0 years, male, NA, stage:2, alive, 1320 days
5.1
DO48700
0 years, female, NA, stage:2, alive, 810 days
5.0
DO45161
0 years, male, NA, stage:2, dead, 540 days
4.9
DO45095
0 years, male, NA, stage:2, alive, 1620 days
4.8
DO45099
0 years, male, NA, stage:3, alive, 1590 days
4.8
DO23551
0 years, male, NA, stage:3, dead, 150 days
4.7
DO23547
0 years, male, NA, stage:1, alive, 1020 days
4.6
DO48677
0 years, male, NA, stage:3, alive, 1140 days
4.6
DO50804
0 years, male, NA, stage:2, alive, 720 days
4.5
DO45149
0 years, female, NA, stage:2, alive, 1260 days
4.5
DO45157
0 years, male, NA, stage:2, alive, 1980 days
4.5
DO50803
0 years, female, NA, stage:1, alive, 540 days
4.4
DO23546
0 years, male, NA, stage:2, alive, 1050 days
4.4
DO50818
0 years, male, NA, stage:2, alive, 510 days
4.3
DO23519
0 years, male, NA, stage:3, alive, 630 days
4.3
DO45097
0 years, male, NA, stage:3, alive, 1620 days
4.3
DO23543
0 years, male, NA, stage:2, alive, 1020 days
4.2
DO45169
0 years, male, NA, stage:3, alive, 1350 days
4.2
DO45229
0 years, male, NA, stage:1, alive, 990 days
4.2
DO48695
0 years, male, NA, stage:2, alive, 720 days
4.0
DO48737
0 years, male, NA, stage:1, alive, 720 days
4.0
DO50783
0 years, male, NA, stage:3, alive, 480 days
3.9
DO23513
0 years, male, NA, stage:3, alive, 1200 days
3.9
DO50798
0 years, male, NA, stage:3, dead, 30 days
3.9
DO45109
0 years, male, NA, stage:2, alive, 1590 days
3.7
DO45091
0 years, male, NA, stage:2, dead, 1320 days
3.6
DO50814
0 years, male, NA, stage:3, alive, 420 days
3.5
DO48674
0 years, male, NA, stage:2, alive, 1260 days
3.5
DO45287
0 years, male, NA, stage:1, alive, 390 days
3.5
DO48693
0 years, male, NA, stage:2, alive, 900 days
3.4
DO50817
0 years, male, NA, stage:2, alive, 390 days
3.4
DO227643
0 years, male, NA, stage:2, alive, 1260 days
3.4
DO23512
0 years, male, NA, stage:1, alive, 1260 days
3.3
DO23544
0 years, male, NA, stage:2, alive, 960 days
3.3
DO50840
0 years, male, NA, stage:2, alive, 330 days
3.3
DO50859
0 years, male, NA, stage:2, alive, 180 days
3.2
DO23525
0 years, male, NA, stage:4, alive, 1050 days
3.1
DO48747
0 years, male, NA, stage:3, alive, 540 days
3.1
DO45133
0 years, male, NA, stage:3, dead, 660 days
2.7
DO23549
0 years, male, NA, stage:3, alive, 990 days
2.6
DO45237
0 years, male, NA, stage:2, alive, 900 days
2.5
DO23509
0 years, male, NA, stage:3, dead, 780 days
2.5
DO23533
0 years, male, NA, stage:2, alive, 900 days
2.4
DO50839
0 years, female, NA, stage:3, alive, 330 days
2.2
DO23516
0 years, male, NA, stage:3, dead, 20 days
1.9
DO45277
0 years, male, NA, stage:3, alive, 600 days
1.7
DO50816
0 years, male, NA, stage:2, alive, 390 days
1.6
DO45299
0 years, female, NA, stage:1, alive, 1440 days
0.8
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
851
Tumor
2.3
413
Tumor
2.0
385
Tumor
1.8
285
Tumor
1.5
387
Tumor
1.4
131
Tumor
1.2
363
Tumor
1.2
863
Tumor
1.1
331
Tumor
1.1
391
Tumor
0.9
367
Tumor
0.8
777
Tumor
0.8
671
Tumor
0.8
147
Tumor
0.7
517
Tumor
0.6
393
Tumor
0.6
573
Tumor
0.6
778
Normal
0.6
737
Tumor
0.5
125
Tumor
0.5
877
Tumor
0.5
743
Tumor
0.5
1022
Normal
0.5
616
Normal
0.4
745
Tumor
0.4
523
Tumor
0.4
815
Tumor
0.4
1025
Tumor
0.4
257
Tumor
0.4
187
Tumor
0.4
911
Tumor
0.4
271
Tumor
0.4
128
Normal
0.4
426
Normal
0.4
471
Tumor
0.4
672
Normal
0.3
862
Normal
0.3
744
Normal
0.3
137
Tumor
0.3
513
Tumor
0.3
1031
Tumor
0.3
388
Normal
0.3
982
Normal
0.3
642
Normal
0.3
738
Normal
0.3
1045
Tumor
0.3
955
Tumor
0.3
983
Tumor
0.3
568
Normal
0.2
1016
Normal
0.2
921
Tumor
0.2
1014
Normal
0.2
1026
Normal
0.2
416
Normal
0.2
618
Normal
0.2
1043
Tumor
0.2
342
Normal
0.2
353
Tumor
0.2
222
Normal
0.2
127
Tumor
0.2
824
Normal
0.2
663
Tumor
0.2
474
Normal
0.2
742
Normal
0.1
394
Normal
0.1
142
Normal
0.1
386
Normal
0.1
952
Normal
0.1
278
Normal
0.1
515
Tumor
0.1
463
Tumor
0.1
172
Normal
0.1
535
Tumor
0.1
432
Normal
0.1
227
Tumor
0.1
436
Normal
0.1
446
Normal
0.1
1021
Tumor
0.1
756
Normal
0.1
636
Normal
0.1
445
Tumor
0.1
396
Normal
0.1
884
Normal
0.1
648
Normal
0.1
114
Normal
0.1
746
Normal
0.1
414
Normal
0.1
755
Tumor
0.1
462
Normal
0.1
356
Normal
0.1
433
Tumor
0.1
341
Tumor
0.1
354
Normal
0.0
481
Tumor
0.0
311
Tumor
0.0
472
Normal
0.0
628
Normal
0.0
451
Tumor
0.0
956
Normal
0.0
1032
Normal
0.0
482
Normal
0.0
112
Tumor
0.0
874
Normal
0.0
162
Normal
0.0
864
Normal
0.0
553
Tumor
0.0
1028
Normal
0.0
665
Tumor
0.0
312
Normal
0.0
221
Tumor
0.0
1042
Normal
0.0
455
Tumor
0.0
358
Normal
0.0
456
Normal
0.0
958
Normal
0.0
866
Normal
0.0
431
Tumor
0.0
298
Normal
0.0
223
Tumor
0.0
964
Normal
0.0
392
Normal
0.0
722
Normal
0.0
567
Tumor
0.0
641
Tumor
0.0
666
Normal
0.0
978
Normal
0.0
984
Normal
0.0
966
Normal
0.0
546
Normal
0.0
424
Normal
0.0
464
Normal
0.0
422
Normal
-0.1
132
Normal
-0.1
148
Normal
-0.1
528
Normal
-0.1
912
Normal
-0.1
786
Normal
-0.1
976
Normal
-0.1
423
Tumor
-0.1
627
Tumor
-0.1
186
Normal
-0.1
328
Normal
-0.1
664
Normal
-0.1
728
Normal
-0.1
968
Normal
-0.1
428
Normal
-0.1
258
Normal
-0.1
527
Tumor
-0.1
452
Normal
-0.1
1041
Tumor
-0.1
188
Normal
-0.1
1046
Normal
-0.1
196
Normal
-0.1
113
Tumor
-0.1
537
Tumor
-0.1
126
Normal
-0.1
943
Tumor
-0.1
1015
Tumor
-0.1
272
Normal
-0.1
213
Tumor
-0.1
327
Tumor
-0.1
262
Normal
-0.1
228
Normal
-0.1
488
Normal
-0.1
286
Normal
-0.1
868
Normal
-0.1
574
Normal
-0.1
217
Tumor
-0.1
412
Normal
-0.1
435
Tumor
-0.1
111
Normal
-0.1
714
Normal
-0.1
124
Normal
-0.1
461
Tumor
-0.2
212
Normal
-0.2
343
Tumor
-0.2
493
Tumor
-0.2
518
Normal
-0.2
365
Tumor
-0.2
466
Normal
-0.2
538
Normal
-0.2
944
Normal
-0.2
344
Normal
-0.2
138
Normal
-0.2
434
Normal
-0.2
865
Tumor
-0.2
882
Normal
-0.2
662
Normal
-0.2
448
Normal
-0.2
185
Tumor
-0.2
484
Normal
-0.2
938
Normal
-0.2
313
Tumor
-0.2
975
Tumor
-0.2
192
Normal
-0.2
617
Tumor
-0.2
967
Tumor
-0.2
195
Tumor
-0.2
145
Tumor
-0.2
981
Tumor
-0.2
141
Tumor
-0.2
686
Normal
-0.2
723
Tumor
-0.2
415
Tumor
-0.2
232
Normal
-0.2
444
Normal
-0.2
977
Tumor
-0.2
558
Normal
-0.2
364
Normal
-0.3
191
Tumor
-0.3
823
Tumor
-0.3
314
Normal
-0.3
695
Tumor
-0.3
366
Normal
-0.3
514
Normal
-0.3
741
Tumor
-0.3
873
Tumor
-0.3
957
Tumor
-0.3
421
Tumor
-0.3
494
Normal
-0.3
161
Tumor
-0.3
146
Normal
-0.3
297
Tumor
-0.3
1044
Normal
-0.3
214
Normal
-0.3
218
Normal
-0.3
572
Normal
-0.3
696
Normal
-0.3
914
Normal
-0.3
915
Tumor
-0.3
526
Normal
-0.3
478
Normal
-0.3
813
Tumor
-0.3
492
Normal
-0.3
861
Tumor
-0.3
534
Normal
-0.3
858
Normal
-0.3
376
Normal
-0.3
963
Tumor
-0.3
727
Tumor
-0.3
615
Tumor
-0.3
468
Normal
-0.3
685
Tumor
-0.3
277
Tumor
-0.3
785
Tumor
-0.4
447
Tumor
-0.4
545
Tumor
-0.4
557
Tumor
-0.4
916
Normal
-0.4
564
Normal
-0.4
332
Normal
-0.4
918
Normal
-0.4
924
Normal
-0.4
698
Normal
-0.4
362
Normal
-0.4
136
Normal
-0.4
491
Tumor
-0.4
352
Normal
-0.4
554
Normal
-0.4
375
Tumor
-0.4
443
Tumor
-0.4
1027
Tumor
-0.4
954
Normal
-0.4
533
Tumor
-0.4
878
Normal
-0.4
267
Tumor
-0.5
661
Tumor
-0.5
635
Tumor
-0.5
395
Tumor
-0.5
647
Tumor
-0.5
713
Tumor
-0.5
268
Normal
-0.5
913
Tumor
-0.5
368
Normal
-0.5
135
Tumor
-0.5
818
Normal
-0.5
123
Tumor
-0.5
926
Normal
-0.5
817
Tumor
-0.5
224
Normal
-0.5
525
Tumor
-0.5
881
Tumor
-0.6
477
Tumor
-0.6
951
Tumor
-0.6
883
Tumor
-0.6
814
Normal
-0.6
231
Tumor
-0.6
284
Normal
-0.6
171
Tumor
-0.6
721
Tumor
-0.6
852
Normal
-0.6
357
Tumor
-0.6
261
Tumor
-0.6
483
Tumor
-0.6
697
Tumor
-0.6
816
Normal
-0.6
516
Normal
-0.6
923
Tumor
-0.6
355
Tumor
-0.6
922
Normal
-0.6
715
Tumor
-0.6
965
Tumor
-0.6
384
Normal
-0.6
465
Tumor
-0.6
716
Normal
-0.6
867
Tumor
-0.6
473
Tumor
-0.7
427
Tumor
-0.8
917
Tumor
-0.8
524
Normal
-0.8
467
Tumor
-0.8
563
Tumor
-0.9
498
Normal
-0.9
383
Tumor
-0.9
497
Tumor
-0.9
425
Tumor
-0.9
953
Tumor
-1.0
536
Normal
-1.0
724
Normal
-1.0
351
Tumor
-1.0
487
Tumor
-1.1
925
Tumor
-1.1
571
Tumor
-1.2
1013
Tumor
-1.3
411
Tumor
-1.3
283
Tumor
-1.3
937
Tumor
-1.4
857
Tumor
-1.4
361
Tumor
-1.5
211
Tumor
-1.7
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.