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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
MTA2 is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
19.3
Number of samples
362
Samples
Sample
Description
TPM
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
63.5
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
61.6
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
60.6
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
60.0
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
58.5
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
56.8
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
52.8
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
50.7
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
47.5
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
45.5
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
45.2
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
43.7
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
43.6
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
42.2
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
41.7
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
40.6
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
39.6
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
39.1
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
38.4
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
38.3
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
37.3
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
36.2
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
34.9
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
34.9
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
33.7
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
32.9
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
32.6
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
32.5
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
32.5
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
32.5
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
31.4
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
31.3
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
30.9
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
30.7
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
30.5
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
30.4
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
30.3
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
30.0
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
30.0
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
29.6
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
28.8
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
28.7
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
28.7
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
28.3
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
28.3
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
28.0
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
28.0
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
27.5
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
27.4
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
27.3
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
26.8
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
26.7
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
26.6
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
26.4
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
26.3
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
26.1
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
26.0
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
25.8
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
25.7
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
25.4
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
25.4
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
25.3
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
25.3
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
25.3
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
25.0
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
24.9
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
24.9
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
24.9
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
24.9
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
24.7
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
24.6
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
24.1
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
23.9
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
23.6
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
23.6
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
23.5
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
23.2
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
23.2
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
23.1
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
23.0
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
23.0
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
22.9
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
22.8
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
22.7
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
22.6
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
22.5
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
22.5
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
22.5
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
22.5
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
22.4
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
22.1
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
22.0
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
22.0
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
21.7
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
21.7
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
21.6
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
21.5
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
21.5
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
21.5
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
21.3
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
21.3
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
21.3
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
21.2
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
21.2
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
21.0
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
20.9
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
20.8
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
20.8
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
20.7
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
20.7
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
20.6
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
20.6
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
20.5
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
20.5
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
20.5
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
20.5
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
20.3
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
20.3
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
20.1
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
20.1
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
20.1
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
20.1
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
20.0
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
20.0
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
19.9
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
19.9
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
19.9
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
19.9
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
19.9
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
19.8
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
19.7
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
19.7
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
19.7
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
19.7
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
19.7
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
19.4
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
19.4
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
19.4
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
19.4
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
19.3
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
19.3
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
19.2
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
19.0
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
19.0
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
18.9
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
18.9
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
18.9
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
18.9
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
18.8
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
18.7
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
18.6
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
18.6
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
18.6
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
18.6
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
18.5
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
18.5
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
18.5
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
18.4
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
18.2
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
18.2
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
18.2
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
18.2
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
18.2
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
18.2
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
18.1
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
18.1
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
18.0
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
18.0
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
17.9
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
17.8
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
17.8
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
17.8
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
17.8
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
17.7
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
17.6
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
17.6
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
17.6
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
17.5
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
17.5
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
17.5
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
17.5
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
17.3
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
17.2
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
17.2
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
17.1
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
17.1
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
17.1
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
17.0
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
17.0
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
16.9
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
16.8
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
16.7
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
16.6
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
16.6
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
16.6
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
16.6
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
16.6
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
16.6
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
16.6
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
16.4
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
16.3
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
16.3
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
16.2
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
16.2
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
16.2
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
16.1
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
16.1
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
16.1
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
16.1
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
16.0
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
16.0
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
16.0
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
16.0
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
16.0
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
16.0
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
15.9
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
15.8
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
15.8
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
15.8
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
15.8
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
15.7
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
15.7
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
15.7
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
15.5
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
15.4
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
15.4
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
15.3
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
15.2
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
15.2
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
15.2
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
15.1
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
15.1
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
15.1
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
15.1
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
15.1
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
15.0
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
15.0
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
15.0
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
14.9
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
14.9
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
14.9
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
14.9
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
14.8
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
14.8
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
14.7
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
14.5
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
14.5
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
14.5
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
14.4
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
14.2
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
14.2
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
14.2
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
14.0
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
14.0
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
13.9
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
13.9
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
13.9
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
13.8
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
13.8
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
13.7
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
13.7
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
13.7
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
13.6
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
13.5
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
13.5
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
13.5
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
13.4
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
13.4
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
13.4
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
13.4
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
13.3
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
13.3
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
13.3
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
13.3
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
13.3
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
13.2
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
13.2
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
13.1
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
13.1
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
13.0
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
13.0
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
13.0
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
12.8
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
12.8
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
12.8
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
12.7
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
12.7
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
12.7
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
12.6
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
12.5
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
12.5
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
12.5
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
12.4
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
12.4
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
12.3
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
12.2
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
12.2
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
12.2
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
12.2
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
12.0
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
12.0
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
12.0
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
12.0
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
11.8
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
11.8
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
11.8
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
11.7
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
11.7
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
11.6
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
11.6
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
11.5
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
11.5
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
11.4
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
11.2
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
11.2
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
11.0
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
11.0
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
10.9
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
10.9
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
10.9
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
10.7
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
10.7
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
10.6
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
10.6
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
10.6
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
10.6
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
10.4
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
10.4
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
10.4
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
10.2
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
10.1
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
10.1
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
9.8
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
9.8
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
9.7
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
9.5
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
9.5
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
9.3
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
9.2
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
8.9
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
8.8
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
8.7
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
8.3
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
8.3
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
8.1
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
8.0
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
8.0
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
8.0
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
7.9
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
7.9
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
7.8
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
7.7
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
7.2
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
7.0
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
6.7
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
6.7
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
6.7
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
6.6
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
6.6
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
6.3
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
6.2
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
MTA2 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
20.7
Number of samples
231
Samples
Sample
Description
TPM
DO50815
0 years, male, NA, stage:3, alive, 150 days
60.8
DO45211
0 years, male, NA, stage:3, alive, 240 days
58.7
DO45299
0 years, female, NA, stage:1, alive, 1440 days
56.9
DO45287
0 years, male, NA, stage:1, alive, 390 days
48.8
DO45209
0 years, male, NA, stage:4, alive, 1350 days
47.8
DO23530
0 years, male, NA, stage:4, dead, 180 days
43.5
DO45185
0 years, male, NA, stage:2, alive, 600 days
41.6
DO45307
0 years, female, NA, stage:4, dead, 240 days
40.4
DO50799
0 years, female, NA, stage:2, alive, 540 days
39.0
DO48747
0 years, male, NA, stage:3, alive, 540 days
38.9
DO23523
0 years, male, NA, stage:3, alive, 1080 days
38.8
DO23547
0 years, male, NA, stage:1, alive, 1020 days
38.1
DO45139
0 years, male, NA, stage:3, alive, 1320 days
37.8
DO23544
0 years, male, NA, stage:2, alive, 960 days
37.4
DO45301
0 years, male, NA, stage:2, dead, 1440 days
37.3
DO45297
0 years, female, NA, stage:4, dead, 1260 days
37.3
DO45305
0 years, male, NA, stage:4, alive, 300 days
37.3
DO23526
0 years, male, NA, stage:3, alive, 1050 days
37.3
DO45249
0 years, male, NA, stage:1, alive, 630 days
36.8
DO50829
0 years, male, NA, stage:3, alive, 570 days
35.9
DO45277
0 years, male, NA, stage:3, alive, 600 days
35.5
DO45283
0 years, male, NA, stage:3, alive, 510 days
35.4
DO45145
0 years, male, NA, stage:3, dead, 60 days
34.0
DO45273
0 years, male, NA, stage:2, alive, 480 days
33.8
DO45259
0 years, male, NA, stage:3, alive, 330 days
33.4
DO45289
0 years, female, NA, stage:3, alive, 360 days
33.2
DO48732
0 years, male, NA, stage:3, alive, 630 days
32.8
DO23546
0 years, male, NA, stage:2, alive, 1050 days
32.2
DO50819
0 years, female, NA, stage:2, alive, 510 days
32.1
DO50800
0 years, male, NA, stage:2, alive, 510 days
31.4
DO50840
0 years, male, NA, stage:2, alive, 330 days
30.8
DO45275
0 years, male, NA, stage:3, dead, 10 days
30.7
DO50791
0 years, female, NA, stage:1, dead, 480 days
30.6
DO50850
0 years, male, NA, stage:3, alive, 720 days
29.5
DO23549
0 years, male, NA, stage:3, alive, 990 days
29.4
DO50778
0 years, male, NA, stage:4, alive, 630 days
29.4
DO45241
0 years, male, NA, stage:1, alive, 1080 days
29.2
DO48737
0 years, male, NA, stage:1, alive, 720 days
29.0
DO50845
0 years, male, NA, stage:3, alive, 210 days
28.1
DO45205
0 years, female, NA, stage:2, dead, 90 days
27.6
DO23540
0 years, male, NA, stage:1, alive, 750 days
27.6
DO48697
0 years, female, NA, stage:2, dead, 810 days
27.3
DO45265
0 years, male, NA, stage:3, alive, 1020 days
26.9
DO45127
0 years, male, NA, stage:3, dead, 420 days
26.8
DO48720
0 years, female, NA, stage:2, alive, 570 days
26.7
DO45217
0 years, female, NA, stage:3, dead, 270 days
26.3
DO45251
0 years, female, NA, stage:2, alive, 900 days
26.3
DO50806
0 years, male, NA, stage:4, alive, 540 days
26.1
DO23552
0 years, female, NA, stage:1, alive, 810 days
25.7
DO48717
0 years, male, NA, stage:4, dead, 180 days
25.5
DO45155
0 years, male, NA, stage:2, alive, 2160 days
25.5
DO48733
0 years, male, NA, stage:2, alive, 600 days
25.5
DO23524
0 years, female, NA, stage:2, alive, 1050 days
25.3
DO45269
0 years, male, NA, stage:3, alive, 750 days
25.1
DO45141
0 years, male, NA, stage:2, alive, 1320 days
25.0
DO45231
0 years, male, NA, stage:2, alive, 930 days
25.0
DO48743
0 years, female, NA, stage:2, alive, 570 days
24.9
DO45303
0 years, female, NA, stage:3, alive, 990 days
24.6
DO48700
0 years, female, NA, stage:2, alive, 810 days
24.3
DO45095
0 years, male, NA, stage:2, alive, 1620 days
24.2
DO50855
0 years, male, NA, stage:2, alive, 570 days
24.1
DO48728
0 years, female, NA, stage:2, alive, 150 days
24.1
DO48736
0 years, female, NA, stage:1, alive, 600 days
23.8
DO23537
0 years, male, NA, stage:2, dead, 900 days
23.6
DO23510
0 years, female, NA, stage:2, alive, 870 days
23.5
DO45149
0 years, female, NA, stage:2, alive, 1260 days
23.4
DO45245
0 years, female, NA, stage:2, dead, 240 days
23.1
DO23508
0 years, female, NA, stage:2, alive, 390 days
23.1
DO45157
0 years, male, NA, stage:2, alive, 1980 days
23.0
DO48757
0 years, female, NA, stage:3, alive, 480 days
22.8
DO45189
0 years, female, NA, stage:2, alive, 1200 days
22.6
DO45092
0 years, male, NA, stage:4, dead, 1200 days
22.4
DO50798
0 years, male, NA, stage:3, dead, 30 days
22.2
DO45105
0 years, male, NA, stage:1, alive, 1680 days
22.0
DO48730
0 years, female, NA, stage:2, alive, 630 days
21.9
DO45279
0 years, male, NA, stage:3, alive, 1290 days
21.8
DO45165
0 years, male, NA, stage:2, alive, 690 days
21.8
DO45135
0 years, male, NA, stage:1, alive, 1410 days
21.7
DO50802
0 years, male, NA, stage:2, alive, 930 days
21.7
DO50809
0 years, male, NA, stage:3, dead, 720 days
21.6
DO45257
0 years, male, NA, stage:3, alive, 810 days
21.3
DO23535
0 years, male, NA, stage:1, alive, 960 days
21.3
DO45221
0 years, female, NA, stage:4, dead, 390 days
21.2
DO23543
0 years, male, NA, stage:2, alive, 1020 days
21.2
DO50805
0 years, male, NA, stage:2, alive, 690 days
21.2
DO23525
0 years, male, NA, stage:4, alive, 1050 days
21.1
DO48712
0 years, male, NA, stage:2, alive, 810 days
21.0
DO50839
0 years, female, NA, stage:3, alive, 330 days
20.9
DO23519
0 years, male, NA, stage:3, alive, 630 days
20.9
DO23532
0 years, female, NA, stage:1, alive, 960 days
20.7
DO45219
0 years, male, NA, stage:2, alive, 1080 days
20.6
DO23513
0 years, male, NA, stage:3, alive, 1200 days
20.5
DO48701
0 years, male, NA, stage:2, alive, 780 days
20.5
DO45131
0 years, male, NA, stage:4, dead, 360 days
20.4
DO50804
0 years, male, NA, stage:2, alive, 720 days
20.3
DO45243
0 years, female, NA, stage:3, alive, 930 days
20.1
DO50811
0 years, male, NA, stage:1, alive, 450 days
20.1
DO45253
0 years, male, NA, stage:2, alive, 870 days
20.0
DO45103
0 years, male, NA, stage:3, alive, 450 days
19.9
DO23521
0 years, male, NA, stage:3, alive, 1110 days
19.8
DO45161
0 years, male, NA, stage:2, dead, 540 days
19.8
DO48681
0 years, male, NA, stage:2, alive, 900 days
19.8
DO45235
0 years, female, NA, stage:1, alive, 900 days
19.7
DO45237
0 years, male, NA, stage:2, alive, 900 days
19.6
DO45115
0 years, male, NA, stage:2, alive, 840 days
19.6
DO45281
0 years, male, NA, stage:4, alive, 750 days
19.3
DO23515
0 years, male, NA, stage:2, alive, 1230 days
19.2
DO23516
0 years, male, NA, stage:3, dead, 20 days
19.0
DO23512
0 years, male, NA, stage:1, alive, 1260 days
19.0
DO48693
0 years, male, NA, stage:2, alive, 900 days
18.9
DO45263
0 years, male, NA, stage:3, dead, 270 days
18.7
DO45195
0 years, male, NA, stage:1, alive, 390 days
18.7
DO45173
0 years, male, NA, stage:3, alive, 1170 days
18.6
DO45113
0 years, male, NA, stage:3, alive, 1560 days
18.5
DO50803
0 years, female, NA, stage:1, alive, 540 days
18.5
DO23539
0 years, male, NA, stage:1, alive, 1110 days
18.4
DO23514
0 years, male, NA, stage:2, alive, 1290 days
18.4
DO45125
0 years, male, NA, stage:3, alive, 1680 days
18.3
DO45213
0 years, male, NA, stage:1, alive, 1200 days
18.2
DO50816
0 years, male, NA, stage:2, alive, 390 days
18.1
DO45225
0 years, male, NA, stage:1, alive, 1050 days
18.0
DO48716
0 years, male, NA, stage:2, alive, 720 days
18.0
DO50844
0 years, male, NA, stage:4, alive, 300 days
17.9
DO23551
0 years, male, NA, stage:3, dead, 150 days
17.9
DO45121
0 years, male, NA, stage:3, alive, 1530 days
17.8
DO45255
0 years, male, NA, stage:3, alive, 720 days
17.7
DO48725
0 years, male, NA, stage:1, alive, 780 days
17.6
DO48761
0 years, male, NA, stage:2, alive, 870 days
17.6
DO48751
0 years, male, NA, stage:2, dead, 480 days
17.5
DO45153
0 years, female, NA, stage:2, alive, 1380 days
17.4
DO45101
0 years, male, NA, stage:2, alive, 1680 days
17.4
DO48715
0 years, female, NA, stage:2, dead, 690 days
17.4
DO23548
0 years, female, NA, stage:1, alive, 840 days
17.3
DO45137
0 years, male, NA, stage:1, alive, 1320 days
17.3
DO50787
0 years, male, NA, stage:3, alive, 480 days
17.2
DO50793
0 years, male, NA, stage:4, alive, 540 days
17.2
DO48723
0 years, male, NA, stage:1, alive, 600 days
17.1
DO23533
0 years, male, NA, stage:2, alive, 900 days
17.0
DO50808
0 years, male, NA, stage:2, alive, 570 days
16.9
DO45193
0 years, female, NA, stage:4, dead, 120 days
16.9
DO45197
0 years, male, NA, stage:2, alive, 1170 days
16.8
DO45099
0 years, male, NA, stage:3, alive, 1590 days
16.7
DO50818
0 years, male, NA, stage:2, alive, 510 days
16.6
DO45227
0 years, female, NA, stage:2, alive, 1020 days
16.4
DO50813
0 years, male, NA, stage:2, alive, 420 days
16.4
DO45093
0 years, male, NA, stage:2, dead, 720 days
16.3
DO45201
0 years, male, NA, stage:1, alive, 900 days
16.2
DO45233
0 years, male, NA, stage:3, alive, 900 days
16.1
DO45181
0 years, female, NA, stage:2, alive, 1200 days
16.1
DO48682
0 years, female, NA, stage:3, dead, 120 days
16.1
DO45159
0 years, male, NA, stage:3, alive, 1470 days
16.0
DO50807
0 years, male, NA, stage:1, alive, 540 days
15.9
DO50776
0 years, male, NA, stage:1, alive, 690 days
15.8
DO23528
0 years, female, NA, stage:2, alive, 1020 days
15.7
DO23541
0 years, male, NA, stage:2, alive, 930 days
15.7
DO50832
0 years, male, NA, stage:3, alive, 90 days
15.7
DO48746
0 years, male, NA, stage:3, alive, 570 days
15.5
DO48679
0 years, male, NA, stage:2, alive, 1200 days
15.5
DO50822
0 years, male, NA, stage:2, alive, 510 days
15.4
DO45285
0 years, male, NA, stage:3, alive, 480 days
15.4
DO45223
0 years, male, NA, stage:4, alive, 1020 days
15.4
DO45143
0 years, male, NA, stage:3, alive, 1290 days
15.3
DO45119
0 years, male, NA, stage:3, dead, 510 days
15.3
DO48759
0 years, male, NA, stage:3, alive, 720 days
15.3
DO23545
0 years, male, NA, stage:2, dead, 570 days
15.3
DO45261
0 years, male, NA, stage:3, alive, 990 days
15.1
DO45229
0 years, male, NA, stage:1, alive, 990 days
15.0
DO45215
0 years, male, NA, stage:2, alive, 1170 days
15.0
DO50785
0 years, male, NA, stage:4, dead, 90 days
14.9
DO45207
0 years, male, NA, stage:1, alive, 1050 days
14.8
DO45267
0 years, male, NA, stage:3, dead, 570 days
14.8
DO23542
0 years, male, NA, stage:3, alive, 960 days
14.7
DO48672
0 years, male, NA, stage:2, alive, 450 days
14.6
DO48695
0 years, male, NA, stage:2, alive, 720 days
14.5
DO23536
0 years, male, NA, stage:2, alive, 930 days
14.5
DO45187
0 years, female, NA, stage:1, alive, 1260 days
14.5
DO50817
0 years, male, NA, stage:2, alive, 390 days
14.4
DO50814
0 years, male, NA, stage:3, alive, 420 days
14.4
DO48706
0 years, male, NA, stage:2, alive, 870 days
14.3
DO23529
0 years, male, NA, stage:4, alive, 930 days
14.3
DO45091
0 years, male, NA, stage:2, dead, 1320 days
14.1
DO227801
0 years, female, NA, stage:1, alive, 660 days
14.1
DO45107
0 years, female, NA, stage:2, alive, 1710 days
14.1
DO23527
0 years, male, NA, stage:1, alive, 1050 days
14.0
DO48742
0 years, male, NA, stage:2, alive, 600 days
14.0
DO45109
0 years, male, NA, stage:2, alive, 1590 days
13.9
DO48704
0 years, female, NA, stage:3, alive, 750 days
13.9
DO45117
0 years, female, NA, stage:2, dead, 1110 days
13.9
DO45191
0 years, female, NA, stage:2, alive, 1200 days
13.8
DO23518
0 years, male, NA, stage:2, alive, 1320 days
13.8
DO50774
0 years, female, NA, stage:2, alive, 720 days
13.7
DO50825
0 years, male, NA, stage:2, alive, 390 days
13.7
DO23550
0 years, male, NA, stage:1, alive, 990 days
13.4
DO45177
0 years, female, NA, stage:3, alive, 1260 days
13.3
DO50789
0 years, female, NA, stage:2, alive, 570 days
13.2
DO45094
0 years, male, NA, stage:3, alive, 1650 days
13.1
DO48719
0 years, male, NA, stage:2, alive, 690 days
13.0
DO45179
0 years, female, NA, stage:2, alive, 600 days
12.9
DO45203
0 years, female, NA, stage:2, alive, 1170 days
12.8
DO45247
0 years, female, NA, stage:2, alive, 210 days
12.7
DO45183
0 years, female, NA, stage:2, dead, 570 days
12.6
DO23534
0 years, male, NA, stage:2, alive, 840 days
12.5
DO50820
0 years, female, NA, stage:3, alive, 510 days
12.2
DO48727
0 years, female, NA, stage:2, dead, 390 days
12.2
DO23531
0 years, female, NA, stage:3, alive, 900 days
11.8
DO50783
0 years, male, NA, stage:3, alive, 480 days
11.7
DO45169
0 years, male, NA, stage:3, alive, 1350 days
11.5
DO50857
0 years, male, NA, stage:2, alive, 210 days
11.4
DO45123
0 years, female, NA, stage:2, dead, 570 days
11.4
DO48760
0 years, female, NA, stage:2, alive, 690 days
11.3
DO45171
0 years, male, NA, stage:3, alive, 600 days
11.0
DO45097
0 years, male, NA, stage:3, alive, 1620 days
10.9
DO45111
0 years, male, NA, stage:2, alive, 1590 days
10.9
DO227643
0 years, male, NA, stage:2, alive, 1260 days
10.8
DO45167
0 years, male, NA, stage:2, dead, 1440 days
10.7
DO23509
0 years, male, NA, stage:3, dead, 780 days
10.6
DO23517
0 years, male, NA, stage:2, alive, 1200 days
10.6
DO48674
0 years, male, NA, stage:2, alive, 1260 days
10.5
DO48677
0 years, male, NA, stage:3, alive, 1140 days
10.4
DO45133
0 years, male, NA, stage:3, dead, 660 days
9.9
DO23511
0 years, female, NA, stage:3, dead, 180 days
9.7
DO45199
0 years, female, NA, stage:2, alive, 1350 days
9.6
DO45096
0 years, male, NA, stage:2, dead, 1290 days
9.5
DO48721
0 years, female, NA, stage:1, alive, 900 days
9.3
DO45129
0 years, male, NA, stage:3, alive, 1470 days
9.1
DO23538
0 years, male, NA, stage:2, alive, 450 days
9.0
DO45239
0 years, male, NA, stage:2, alive, 870 days
8.7
DO48741
0 years, male, NA, stage:3, alive, 240 days
8.7
DO50859
0 years, male, NA, stage:2, alive, 180 days
8.3
DO45163
0 years, male, NA, stage:2, alive, 960 days
8.3
DO45175
0 years, male, NA, stage:2, alive, 1140 days
7.6
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
211
Tumor
1.0
497
Tumor
0.9
161
Tumor
0.8
427
Tumor
0.8
957
Tumor
0.8
814
Normal
0.7
425
Tumor
0.7
813
Tumor
0.7
661
Tumor
0.7
635
Tumor
0.7
737
Tumor
0.6
865
Tumor
0.6
331
Tumor
0.6
545
Tumor
0.6
297
Tumor
0.6
743
Tumor
0.6
777
Tumor
0.5
447
Tumor
0.5
533
Tumor
0.5
523
Tumor
0.5
455
Tumor
0.5
943
Tumor
0.5
355
Tumor
0.5
375
Tumor
0.5
131
Tumor
0.5
953
Tumor
0.5
411
Tumor
0.5
285
Tumor
0.5
1031
Tumor
0.5
881
Tumor
0.5
467
Tumor
0.5
431
Tumor
0.5
1013
Tumor
0.5
665
Tumor
0.4
883
Tumor
0.4
515
Tumor
0.4
983
Tumor
0.4
923
Tumor
0.4
663
Tumor
0.4
525
Tumor
0.4
917
Tumor
0.4
123
Tumor
0.4
135
Tumor
0.4
277
Tumor
0.4
567
Tumor
0.4
461
Tumor
0.4
383
Tumor
0.4
313
Tumor
0.4
213
Tumor
0.4
463
Tumor
0.4
311
Tumor
0.3
517
Tumor
0.3
1025
Tumor
0.3
357
Tumor
0.3
877
Tumor
0.3
721
Tumor
0.3
343
Tumor
0.3
483
Tumor
0.3
647
Tumor
0.3
573
Tumor
0.3
141
Tumor
0.3
487
Tumor
0.3
387
Tumor
0.3
1021
Tumor
0.3
537
Tumor
0.3
977
Tumor
0.3
755
Tumor
0.3
125
Tumor
0.3
327
Tumor
0.3
951
Tumor
0.3
671
Tumor
0.3
493
Tumor
0.3
351
Tumor
0.3
283
Tumor
0.3
413
Tumor
0.3
185
Tumor
0.3
975
Tumor
0.3
823
Tumor
0.3
395
Tumor
0.3
563
Tumor
0.3
527
Tumor
0.3
271
Tumor
0.3
817
Tumor
0.2
415
Tumor
0.2
385
Tumor
0.2
451
Tumor
0.2
557
Tumor
0.2
913
Tumor
0.2
615
Tumor
0.2
443
Tumor
0.2
434
Normal
0.2
861
Tumor
0.2
965
Tumor
0.2
967
Tumor
0.2
785
Tumor
0.2
112
Tumor
0.2
937
Tumor
0.2
857
Tumor
0.2
513
Tumor
0.2
724
Normal
0.2
171
Tumor
0.2
137
Tumor
0.2
223
Tumor
0.2
491
Tumor
0.2
341
Tumor
0.2
361
Tumor
0.1
1041
Tumor
0.1
685
Tumor
0.1
421
Tumor
0.1
911
Tumor
0.1
391
Tumor
0.1
873
Tumor
0.1
963
Tumor
0.1
921
Tumor
0.1
147
Tumor
0.1
187
Tumor
0.1
851
Tumor
0.1
727
Tumor
0.1
915
Tumor
0.1
715
Tumor
0.1
268
Normal
0.1
188
Normal
0.1
433
Tumor
0.1
195
Tumor
0.1
367
Tumor
0.1
867
Tumor
0.1
384
Normal
0.1
217
Tumor
0.1
863
Tumor
0.1
221
Tumor
0.1
365
Tumor
0.1
535
Tumor
0.1
267
Tumor
0.1
553
Tumor
0.1
492
Normal
0.1
191
Tumor
0.1
445
Tumor
0.1
925
Tumor
0.1
471
Tumor
0.0
192
Normal
0.0
477
Tumor
0.0
697
Tumor
0.0
617
Tumor
0.0
145
Tumor
0.0
1015
Tumor
0.0
741
Tumor
0.0
127
Tumor
0.0
113
Tumor
0.0
435
Tumor
0.0
815
Tumor
0.0
536
Normal
0.0
955
Tumor
0.0
231
Tumor
0.0
1043
Tumor
0.0
641
Tumor
0.0
444
Normal
0.0
423
Tumor
0.0
978
Normal
0.0
1028
Normal
0.0
538
Normal
0.0
524
Normal
0.0
966
Normal
0.0
481
Tumor
0.0
465
Tumor
0.0
478
Normal
0.0
686
Normal
0.0
262
Normal
0.0
126
Normal
0.0
362
Normal
0.0
224
Normal
0.0
1042
Normal
0.0
627
Tumor
0.0
227
Tumor
-0.1
261
Tumor
-0.1
852
Normal
-0.1
916
Normal
-0.1
628
Normal
-0.1
212
Normal
-0.1
393
Tumor
-0.1
984
Normal
-0.1
498
Normal
-0.1
672
Normal
-0.1
874
Normal
-0.1
878
Normal
-0.1
666
Normal
-0.1
312
Normal
-0.1
386
Normal
-0.1
696
Normal
-0.1
662
Normal
-0.1
272
Normal
-0.1
716
Normal
-0.1
284
Normal
-0.1
353
Tumor
-0.1
713
Tumor
-0.1
146
Normal
-0.1
981
Tumor
-0.1
884
Normal
-0.1
745
Tumor
-0.1
954
Normal
-0.1
473
Tumor
-0.1
422
Normal
-0.1
664
Normal
-0.1
258
Normal
-0.1
124
Normal
-0.1
866
Normal
-0.1
456
Normal
-0.1
756
Normal
-0.1
1032
Normal
-0.1
912
Normal
-0.1
424
Normal
-0.1
976
Normal
-0.1
956
Normal
-0.1
944
Normal
-0.1
516
Normal
-0.1
714
Normal
-0.1
1014
Normal
-0.1
1026
Normal
-0.2
1027
Tumor
-0.2
938
Normal
-0.2
914
Normal
-0.2
982
Normal
-0.2
824
Normal
-0.2
332
Normal
-0.2
366
Normal
-0.2
558
Normal
-0.2
1044
Normal
-0.2
952
Normal
-0.2
858
Normal
-0.2
642
Normal
-0.2
722
Normal
-0.2
738
Normal
-0.2
778
Normal
-0.2
138
Normal
-0.2
1016
Normal
-0.2
882
Normal
-0.2
958
Normal
-0.2
924
Normal
-0.2
474
Normal
-0.2
636
Normal
-0.2
428
Normal
-0.2
818
Normal
-0.2
728
Normal
-0.2
352
Normal
-0.2
518
Normal
-0.2
464
Normal
-0.2
1022
Normal
-0.2
466
Normal
-0.2
314
Normal
-0.2
862
Normal
-0.2
446
Normal
-0.2
786
Normal
-0.2
298
Normal
-0.2
968
Normal
-0.2
572
Normal
-0.2
218
Normal
-0.2
534
Normal
-0.2
554
Normal
-0.2
648
Normal
-0.2
868
Normal
-0.2
257
Tumor
-0.2
514
Normal
-0.2
278
Normal
-0.2
232
Normal
-0.2
468
Normal
-0.2
926
Normal
-0.2
142
Normal
-0.2
364
Normal
-0.2
816
Normal
-0.2
412
Normal
-0.2
148
Normal
-0.2
723
Tumor
-0.2
376
Normal
-0.2
432
Normal
-0.2
392
Normal
-0.2
574
Normal
-0.2
162
Normal
-0.2
462
Normal
-0.2
436
Normal
-0.2
368
Normal
-0.2
396
Normal
-0.2
1045
Tumor
-0.2
114
Normal
-0.2
616
Normal
-0.2
344
Normal
-0.2
564
Normal
-0.2
452
Normal
-0.2
864
Normal
-0.2
618
Normal
-0.2
568
Normal
-0.2
416
Normal
-0.2
426
Normal
-0.2
482
Normal
-0.2
744
Normal
-0.2
528
Normal
-0.2
328
Normal
-0.2
356
Normal
-0.3
526
Normal
-0.3
414
Normal
-0.3
571
Tumor
-0.3
448
Normal
-0.3
354
Normal
-0.3
136
Normal
-0.3
964
Normal
-0.3
363
Tumor
-0.3
388
Normal
-0.3
494
Normal
-0.3
488
Normal
-0.3
228
Normal
-0.3
918
Normal
-0.3
922
Normal
-0.3
1046
Normal
-0.3
742
Normal
-0.3
172
Normal
-0.3
394
Normal
-0.3
472
Normal
-0.3
214
Normal
-0.3
746
Normal
-0.3
286
Normal
-0.3
186
Normal
-0.3
132
Normal
-0.3
546
Normal
-0.3
111
Normal
-0.3
342
Normal
-0.3
698
Normal
-0.3
695
Tumor
-0.4
222
Normal
-0.4
358
Normal
-0.4
484
Normal
-0.4
196
Normal
-0.4
128
Normal
-0.4
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
