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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
HYOU1 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
42.0
Number of samples
362
Samples
Sample
Description
TPM
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
279.0
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
162.2
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
138.4
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
121.1
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
119.6
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
118.0
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
109.8
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
106.5
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
104.5
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
103.4
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
101.8
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
101.7
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
100.4
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
100.3
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
98.7
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
94.6
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
91.5
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
90.6
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
89.9
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
85.1
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
84.2
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
82.9
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
82.8
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
81.2
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
80.5
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
79.3
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
78.4
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
78.3
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
76.7
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
75.0
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
74.8
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
74.5
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
74.0
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
74.0
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
73.2
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
72.1
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
72.0
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
71.8
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
71.1
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
69.6
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
69.3
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
68.9
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
68.1
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
67.5
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
67.5
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
67.2
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
67.1
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
65.9
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
65.8
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
65.7
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
64.9
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
64.7
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
64.5
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
64.3
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
63.8
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
63.3
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
62.8
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
62.7
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
62.7
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
62.6
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
62.4
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
62.4
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
61.0
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
61.0
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
60.8
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
60.7
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
60.3
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
58.5
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
58.2
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
58.2
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
57.5
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
57.4
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
57.2
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
56.8
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
56.8
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
56.1
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
56.0
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
55.8
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
55.8
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
55.7
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
55.2
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
55.2
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
54.9
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
54.5
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
54.3
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
53.9
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
53.8
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
53.3
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
53.3
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
53.1
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
53.1
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
52.9
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
52.8
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
52.3
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
52.3
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
52.2
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
52.2
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
52.0
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
51.5
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
51.4
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
51.2
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
50.8
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
50.6
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
50.4
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
49.7
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
49.6
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
49.4
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
49.3
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
49.3
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
48.9
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
48.7
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
48.6
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
48.5
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
47.5
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
47.4
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
47.3
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
47.0
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
46.9
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
46.8
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
46.5
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
46.4
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
46.3
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
46.3
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
45.9
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
45.8
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
45.7
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
45.3
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
45.1
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
44.7
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
44.5
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
44.4
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
44.3
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
44.2
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
44.2
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
43.8
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
43.7
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
43.7
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
43.3
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
42.5
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
42.5
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
42.4
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
41.9
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
41.9
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
41.4
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
41.2
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
40.8
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
40.4
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
40.3
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
40.1
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
40.1
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
39.9
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
39.8
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
39.7
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
39.4
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
39.1
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
39.1
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
38.9
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
38.7
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
38.6
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
38.4
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
38.2
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
38.2
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
38.1
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
38.1
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
37.9
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
37.7
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
37.5
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
37.5
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
37.5
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
37.5
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
37.3
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
37.3
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
37.3
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
37.1
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
37.1
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
37.1
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
36.9
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
36.8
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
36.5
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
36.5
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
36.4
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
36.1
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
36.0
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
35.9
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
35.8
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
35.8
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
35.6
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
35.5
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
35.0
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
35.0
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
34.9
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
34.7
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
34.6
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
34.5
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
34.4
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
34.4
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
34.4
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
34.3
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
34.2
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
34.2
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
34.0
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
33.9
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
33.7
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
33.5
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
33.3
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
32.8
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
32.8
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
32.6
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
32.6
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
32.5
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
32.4
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
32.2
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
32.1
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
32.1
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
31.3
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
31.1
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
31.1
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
30.7
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
30.5
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
30.2
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
30.2
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
30.0
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
29.9
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
29.9
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
29.9
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
29.9
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
29.8
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
29.8
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
29.7
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
29.7
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
29.7
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
29.3
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
29.3
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
29.2
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
29.1
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
28.8
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
28.6
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
28.2
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
28.0
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
27.9
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
27.8
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
27.6
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
27.5
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
27.4
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
27.3
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
27.2
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
27.1
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
26.7
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
26.7
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
26.6
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
26.6
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
26.6
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
26.5
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
26.5
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
26.1
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
26.0
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
25.8
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
25.8
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
25.8
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
25.7
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
25.6
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
25.5
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
25.4
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
25.4
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
25.4
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
25.4
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
25.3
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
25.1
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
25.0
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
24.8
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
24.8
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
24.8
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
24.6
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
24.5
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
24.5
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
24.3
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
24.3
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
24.1
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
23.9
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
23.9
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
23.6
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
23.6
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
23.5
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
23.4
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
23.1
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
22.9
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
22.8
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
22.7
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
22.5
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
22.2
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
22.2
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
22.0
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
21.9
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
21.8
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
21.7
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
21.6
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
21.5
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
21.5
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
21.4
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
21.3
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
21.3
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
21.1
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
21.0
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
21.0
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
20.9
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
20.9
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
20.8
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
20.6
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
20.6
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
20.4
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
20.3
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
20.3
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
20.2
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
20.1
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
19.9
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
19.8
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
19.8
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
19.8
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
19.4
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
19.1
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
18.9
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
18.8
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
18.7
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
18.7
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
18.6
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
18.5
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
18.3
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
17.7
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
17.4
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
17.2
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
17.1
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
16.3
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
16.1
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
16.0
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
15.7
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
15.2
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
15.1
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
14.9
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
14.9
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
14.6
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
14.6
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
14.4
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
14.4
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
14.3
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
13.9
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
13.8
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
13.5
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
13.3
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
13.2
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
13.1
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
12.8
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
12.6
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
11.6
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
11.3
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
11.0
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
10.2
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
9.9
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
9.9
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
9.3
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
8.3
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
8.1
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
HYOU1 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
48.7
Number of samples
231
Samples
Sample
Description
TPM
DO48733
0 years, male, NA, stage:2, alive, 600 days
154.3
DO50829
0 years, male, NA, stage:3, alive, 570 days
154.3
DO45092
0 years, male, NA, stage:4, dead, 1200 days
147.7
DO45119
0 years, male, NA, stage:3, dead, 510 days
137.8
DO45113
0 years, male, NA, stage:3, alive, 1560 days
135.1
DO45091
0 years, male, NA, stage:2, dead, 1320 days
133.3
DO45185
0 years, male, NA, stage:2, alive, 600 days
125.2
DO45209
0 years, male, NA, stage:4, alive, 1350 days
121.1
DO48682
0 years, female, NA, stage:3, dead, 120 days
113.3
DO45239
0 years, male, NA, stage:2, alive, 870 days
111.5
DO23510
0 years, female, NA, stage:2, alive, 870 days
109.5
DO45277
0 years, male, NA, stage:3, alive, 600 days
105.4
DO45117
0 years, female, NA, stage:2, dead, 1110 days
93.9
DO45127
0 years, male, NA, stage:3, dead, 420 days
92.7
DO23552
0 years, female, NA, stage:1, alive, 810 days
92.6
DO23511
0 years, female, NA, stage:3, dead, 180 days
92.5
DO50815
0 years, male, NA, stage:3, alive, 150 days
89.7
DO45245
0 years, female, NA, stage:2, dead, 240 days
88.4
DO45125
0 years, male, NA, stage:3, alive, 1680 days
85.0
DO45205
0 years, female, NA, stage:2, dead, 90 days
84.0
DO48701
0 years, male, NA, stage:2, alive, 780 days
83.8
DO50850
0 years, male, NA, stage:3, alive, 720 days
83.4
DO45155
0 years, male, NA, stage:2, alive, 2160 days
82.0
DO50778
0 years, male, NA, stage:4, alive, 630 days
79.5
DO23521
0 years, male, NA, stage:3, alive, 1110 days
77.4
DO45231
0 years, male, NA, stage:2, alive, 930 days
75.1
DO45241
0 years, male, NA, stage:1, alive, 1080 days
75.1
DO45257
0 years, male, NA, stage:3, alive, 810 days
74.8
DO45099
0 years, male, NA, stage:3, alive, 1590 days
74.6
DO45159
0 years, male, NA, stage:3, alive, 1470 days
73.8
DO48743
0 years, female, NA, stage:2, alive, 570 days
73.6
DO45275
0 years, male, NA, stage:3, dead, 10 days
71.2
DO23515
0 years, male, NA, stage:2, alive, 1230 days
71.0
DO48704
0 years, female, NA, stage:3, alive, 750 days
70.9
DO50799
0 years, female, NA, stage:2, alive, 540 days
70.8
DO23518
0 years, male, NA, stage:2, alive, 1320 days
70.5
DO48717
0 years, male, NA, stage:4, dead, 180 days
70.5
DO48730
0 years, female, NA, stage:2, alive, 630 days
68.9
DO23524
0 years, female, NA, stage:2, alive, 1050 days
68.6
DO45165
0 years, male, NA, stage:2, alive, 690 days
68.5
DO45273
0 years, male, NA, stage:2, alive, 480 days
68.4
DO45303
0 years, female, NA, stage:3, alive, 990 days
68.0
DO45269
0 years, male, NA, stage:3, alive, 750 days
68.0
DO45121
0 years, male, NA, stage:3, alive, 1530 days
67.6
DO23525
0 years, male, NA, stage:4, alive, 1050 days
67.1
DO23540
0 years, male, NA, stage:1, alive, 750 days
66.7
DO45221
0 years, female, NA, stage:4, dead, 390 days
66.3
DO23526
0 years, male, NA, stage:3, alive, 1050 days
65.9
DO45267
0 years, male, NA, stage:3, dead, 570 days
65.7
DO48700
0 years, female, NA, stage:2, alive, 810 days
65.2
DO45167
0 years, male, NA, stage:2, dead, 1440 days
63.6
DO48760
0 years, female, NA, stage:2, alive, 690 days
63.2
DO45137
0 years, male, NA, stage:1, alive, 1320 days
63.1
DO45189
0 years, female, NA, stage:2, alive, 1200 days
62.8
DO45227
0 years, female, NA, stage:2, alive, 1020 days
62.5
DO23537
0 years, male, NA, stage:2, dead, 900 days
62.2
DO50855
0 years, male, NA, stage:2, alive, 570 days
62.2
DO50857
0 years, male, NA, stage:2, alive, 210 days
61.8
DO45123
0 years, female, NA, stage:2, dead, 570 days
61.8
DO50806
0 years, male, NA, stage:4, alive, 540 days
61.5
DO45203
0 years, female, NA, stage:2, alive, 1170 days
61.0
DO45225
0 years, male, NA, stage:1, alive, 1050 days
59.7
DO23535
0 years, male, NA, stage:1, alive, 960 days
59.7
DO45305
0 years, male, NA, stage:4, alive, 300 days
59.1
DO48761
0 years, male, NA, stage:2, alive, 870 days
59.0
DO50845
0 years, male, NA, stage:3, alive, 210 days
58.0
DO45283
0 years, male, NA, stage:3, alive, 510 days
58.0
DO45096
0 years, male, NA, stage:2, dead, 1290 days
57.0
DO227801
0 years, female, NA, stage:1, alive, 660 days
56.7
DO50807
0 years, male, NA, stage:1, alive, 540 days
56.6
DO48720
0 years, female, NA, stage:2, alive, 570 days
56.4
DO48742
0 years, male, NA, stage:2, alive, 600 days
54.5
DO23533
0 years, male, NA, stage:2, alive, 900 days
54.2
DO50840
0 years, male, NA, stage:2, alive, 330 days
54.2
DO45229
0 years, male, NA, stage:1, alive, 990 days
54.1
DO50791
0 years, female, NA, stage:1, dead, 480 days
54.1
DO45153
0 years, female, NA, stage:2, alive, 1380 days
53.8
DO45197
0 years, male, NA, stage:2, alive, 1170 days
53.8
DO45237
0 years, male, NA, stage:2, alive, 900 days
53.6
DO23513
0 years, male, NA, stage:3, alive, 1200 days
53.4
DO50798
0 years, male, NA, stage:3, dead, 30 days
53.1
DO45131
0 years, male, NA, stage:4, dead, 360 days
52.8
DO45199
0 years, female, NA, stage:2, alive, 1350 days
52.7
DO45219
0 years, male, NA, stage:2, alive, 1080 days
52.2
DO23550
0 years, male, NA, stage:1, alive, 990 days
52.1
DO45265
0 years, male, NA, stage:3, alive, 1020 days
51.9
DO45243
0 years, female, NA, stage:3, alive, 930 days
51.4
DO50774
0 years, female, NA, stage:2, alive, 720 days
50.8
DO23527
0 years, male, NA, stage:1, alive, 1050 days
50.7
DO48728
0 years, female, NA, stage:2, alive, 150 days
49.3
DO50803
0 years, female, NA, stage:1, alive, 540 days
49.0
DO45173
0 years, male, NA, stage:3, alive, 1170 days
48.9
DO48725
0 years, male, NA, stage:1, alive, 780 days
48.6
DO45235
0 years, female, NA, stage:1, alive, 900 days
48.2
DO48723
0 years, male, NA, stage:1, alive, 600 days
48.1
DO23508
0 years, female, NA, stage:2, alive, 390 days
47.6
DO50832
0 years, male, NA, stage:3, alive, 90 days
47.6
DO45139
0 years, male, NA, stage:3, alive, 1320 days
47.5
DO45169
0 years, male, NA, stage:3, alive, 1350 days
47.2
DO45299
0 years, female, NA, stage:1, alive, 1440 days
46.2
DO23551
0 years, male, NA, stage:3, dead, 150 days
45.9
DO45149
0 years, female, NA, stage:2, alive, 1260 days
45.1
DO50793
0 years, male, NA, stage:4, alive, 540 days
45.1
DO50822
0 years, male, NA, stage:2, alive, 510 days
45.0
DO45193
0 years, female, NA, stage:4, dead, 120 days
45.0
DO45161
0 years, male, NA, stage:2, dead, 540 days
44.9
DO50789
0 years, female, NA, stage:2, alive, 570 days
44.9
DO45253
0 years, male, NA, stage:2, alive, 870 days
44.4
DO48727
0 years, female, NA, stage:2, dead, 390 days
44.0
DO45307
0 years, female, NA, stage:4, dead, 240 days
43.9
DO45213
0 years, male, NA, stage:1, alive, 1200 days
43.8
DO48746
0 years, male, NA, stage:3, alive, 570 days
43.4
DO48732
0 years, male, NA, stage:3, alive, 630 days
43.3
DO50804
0 years, male, NA, stage:2, alive, 720 days
43.2
DO45145
0 years, male, NA, stage:3, dead, 60 days
43.2
DO48706
0 years, male, NA, stage:2, alive, 870 days
43.0
DO45101
0 years, male, NA, stage:2, alive, 1680 days
42.9
DO45281
0 years, male, NA, stage:4, alive, 750 days
42.7
DO45183
0 years, female, NA, stage:2, dead, 570 days
42.5
DO23539
0 years, male, NA, stage:1, alive, 1110 days
42.3
DO45207
0 years, male, NA, stage:1, alive, 1050 days
42.2
DO45135
0 years, male, NA, stage:1, alive, 1410 days
42.1
DO45211
0 years, male, NA, stage:3, alive, 240 days
41.2
DO45255
0 years, male, NA, stage:3, alive, 720 days
40.8
DO45095
0 years, male, NA, stage:2, alive, 1620 days
40.5
DO45163
0 years, male, NA, stage:2, alive, 960 days
40.4
DO50813
0 years, male, NA, stage:2, alive, 420 days
40.3
DO50802
0 years, male, NA, stage:2, alive, 930 days
40.2
DO50819
0 years, female, NA, stage:2, alive, 510 days
40.1
DO23519
0 years, male, NA, stage:3, alive, 630 days
40.1
DO23541
0 years, male, NA, stage:2, alive, 930 days
39.8
DO45133
0 years, male, NA, stage:3, dead, 660 days
39.7
DO50844
0 years, male, NA, stage:4, alive, 300 days
39.3
DO45259
0 years, male, NA, stage:3, alive, 330 days
38.6
DO48697
0 years, female, NA, stage:2, dead, 810 days
38.6
DO45279
0 years, male, NA, stage:3, alive, 1290 days
38.6
DO45143
0 years, male, NA, stage:3, alive, 1290 days
38.4
DO45223
0 years, male, NA, stage:4, alive, 1020 days
38.4
DO50805
0 years, male, NA, stage:2, alive, 690 days
38.1
DO50809
0 years, male, NA, stage:3, dead, 720 days
38.1
DO48737
0 years, male, NA, stage:1, alive, 720 days
38.0
DO45249
0 years, male, NA, stage:1, alive, 630 days
37.9
DO45105
0 years, male, NA, stage:1, alive, 1680 days
37.9
DO50776
0 years, male, NA, stage:1, alive, 690 days
37.9
DO23514
0 years, male, NA, stage:2, alive, 1290 days
37.7
DO45217
0 years, female, NA, stage:3, dead, 270 days
37.2
DO45187
0 years, female, NA, stage:1, alive, 1260 days
37.2
DO23536
0 years, male, NA, stage:2, alive, 930 days
37.1
DO45191
0 years, female, NA, stage:2, alive, 1200 days
36.8
DO48679
0 years, male, NA, stage:2, alive, 1200 days
36.8
DO45247
0 years, female, NA, stage:2, alive, 210 days
36.4
DO45103
0 years, male, NA, stage:3, alive, 450 days
36.0
DO23528
0 years, female, NA, stage:2, alive, 1020 days
35.8
DO45301
0 years, male, NA, stage:2, dead, 1440 days
35.3
DO50811
0 years, male, NA, stage:1, alive, 450 days
35.2
DO48712
0 years, male, NA, stage:2, alive, 810 days
34.9
DO50825
0 years, male, NA, stage:2, alive, 390 days
34.9
DO45094
0 years, male, NA, stage:3, alive, 1650 days
33.7
DO45263
0 years, male, NA, stage:3, dead, 270 days
33.6
DO45215
0 years, male, NA, stage:2, alive, 1170 days
33.4
DO23538
0 years, male, NA, stage:2, alive, 450 days
33.2
DO48715
0 years, female, NA, stage:2, dead, 690 days
33.1
DO45097
0 years, male, NA, stage:3, alive, 1620 days
33.0
DO48716
0 years, male, NA, stage:2, alive, 720 days
32.6
DO48747
0 years, male, NA, stage:3, alive, 540 days
32.4
DO45177
0 years, female, NA, stage:3, alive, 1260 days
32.2
DO50783
0 years, male, NA, stage:3, alive, 480 days
32.1
DO48695
0 years, male, NA, stage:2, alive, 720 days
31.9
DO23542
0 years, male, NA, stage:3, alive, 960 days
31.8
DO23529
0 years, male, NA, stage:4, alive, 930 days
31.6
DO50800
0 years, male, NA, stage:2, alive, 510 days
31.4
DO23530
0 years, male, NA, stage:4, dead, 180 days
31.4
DO45233
0 years, male, NA, stage:3, alive, 900 days
31.3
DO45141
0 years, male, NA, stage:2, alive, 1320 days
31.0
DO45093
0 years, male, NA, stage:2, dead, 720 days
30.9
DO23544
0 years, male, NA, stage:2, alive, 960 days
30.0
DO23516
0 years, male, NA, stage:3, dead, 20 days
29.4
DO45287
0 years, male, NA, stage:1, alive, 390 days
29.3
DO48736
0 years, female, NA, stage:1, alive, 600 days
29.2
DO23549
0 years, male, NA, stage:3, alive, 990 days
28.1
DO45179
0 years, female, NA, stage:2, alive, 600 days
28.0
DO50816
0 years, male, NA, stage:2, alive, 390 days
27.9
DO48751
0 years, male, NA, stage:2, dead, 480 days
27.8
DO50787
0 years, male, NA, stage:3, alive, 480 days
27.8
DO50808
0 years, male, NA, stage:2, alive, 570 days
27.4
DO45175
0 years, male, NA, stage:2, alive, 1140 days
27.2
DO48672
0 years, male, NA, stage:2, alive, 450 days
27.2
DO45261
0 years, male, NA, stage:3, alive, 990 days
27.1
DO48719
0 years, male, NA, stage:2, alive, 690 days
26.9
DO45251
0 years, female, NA, stage:2, alive, 900 days
26.8
DO45297
0 years, female, NA, stage:4, dead, 1260 days
26.6
DO50820
0 years, female, NA, stage:3, alive, 510 days
26.2
DO45107
0 years, female, NA, stage:2, alive, 1710 days
25.8
DO23532
0 years, female, NA, stage:1, alive, 960 days
25.6
DO23512
0 years, male, NA, stage:1, alive, 1260 days
25.3
DO45157
0 years, male, NA, stage:2, alive, 1980 days
24.5
DO45115
0 years, male, NA, stage:2, alive, 840 days
24.5
DO23548
0 years, female, NA, stage:1, alive, 840 days
24.2
DO45289
0 years, female, NA, stage:3, alive, 360 days
24.0
DO23547
0 years, male, NA, stage:1, alive, 1020 days
22.7
DO45285
0 years, male, NA, stage:3, alive, 480 days
22.2
DO23545
0 years, male, NA, stage:2, dead, 570 days
21.8
DO50818
0 years, male, NA, stage:2, alive, 510 days
21.7
DO45195
0 years, male, NA, stage:1, alive, 390 days
21.6
DO23509
0 years, male, NA, stage:3, dead, 780 days
21.6
DO48681
0 years, male, NA, stage:2, alive, 900 days
21.5
DO45129
0 years, male, NA, stage:3, alive, 1470 days
21.5
DO23534
0 years, male, NA, stage:2, alive, 840 days
21.1
DO45111
0 years, male, NA, stage:2, alive, 1590 days
20.9
DO23546
0 years, male, NA, stage:2, alive, 1050 days
20.5
DO50839
0 years, female, NA, stage:3, alive, 330 days
20.2
DO48677
0 years, male, NA, stage:3, alive, 1140 days
20.2
DO45181
0 years, female, NA, stage:2, alive, 1200 days
18.9
DO48759
0 years, male, NA, stage:3, alive, 720 days
18.6
DO48721
0 years, female, NA, stage:1, alive, 900 days
18.3
DO48757
0 years, female, NA, stage:3, alive, 480 days
17.7
DO23543
0 years, male, NA, stage:2, alive, 1020 days
16.7
DO48693
0 years, male, NA, stage:2, alive, 900 days
15.8
DO50859
0 years, male, NA, stage:2, alive, 180 days
15.5
DO48674
0 years, male, NA, stage:2, alive, 1260 days
15.5
DO50814
0 years, male, NA, stage:3, alive, 420 days
15.3
DO23531
0 years, female, NA, stage:3, alive, 900 days
14.6
DO23523
0 years, male, NA, stage:3, alive, 1080 days
14.2
DO23517
0 years, male, NA, stage:2, alive, 1200 days
13.9
DO45201
0 years, male, NA, stage:1, alive, 900 days
13.9
DO50817
0 years, male, NA, stage:2, alive, 390 days
13.2
DO48741
0 years, male, NA, stage:3, alive, 240 days
13.0
DO45109
0 years, male, NA, stage:2, alive, 1590 days
13.0
DO45171
0 years, male, NA, stage:3, alive, 600 days
13.0
DO50785
0 years, male, NA, stage:4, dead, 90 days
12.3
DO227643
0 years, male, NA, stage:2, alive, 1260 days
12.3
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
227
Tumor
2.0
147
Tumor
1.0
387
Tumor
1.0
863
Tumor
0.9
851
Tumor
0.8
257
Tumor
0.8
777
Tumor
0.7
745
Tumor
0.7
327
Tumor
0.7
135
Tumor
0.7
823
Tumor
0.6
963
Tumor
0.6
573
Tumor
0.6
1027
Tumor
0.5
467
Tumor
0.5
635
Tumor
0.5
113
Tumor
0.5
741
Tumor
0.5
145
Tumor
0.5
721
Tumor
0.5
1015
Tumor
0.4
527
Tumor
0.4
481
Tumor
0.4
925
Tumor
0.4
523
Tumor
0.4
285
Tumor
0.4
187
Tumor
0.4
343
Tumor
0.4
1021
Tumor
0.4
755
Tumor
0.3
231
Tumor
0.3
813
Tumor
0.3
937
Tumor
0.3
473
Tumor
0.3
557
Tumor
0.3
218
Normal
0.3
443
Tumor
0.3
395
Tumor
0.3
526
Normal
0.3
125
Tumor
0.3
137
Tumor
0.2
357
Tumor
0.2
1025
Tumor
0.2
696
Normal
0.2
517
Tumor
0.2
368
Normal
0.2
713
Tumor
0.2
923
Tumor
0.2
353
Tumor
0.2
445
Tumor
0.2
697
Tumor
0.2
1044
Normal
0.2
127
Tumor
0.2
487
Tumor
0.2
286
Normal
0.2
615
Tumor
0.2
361
Tumor
0.2
514
Normal
0.2
217
Tumor
0.2
537
Tumor
0.2
814
Normal
0.1
944
Normal
0.1
981
Tumor
0.1
728
Normal
0.1
528
Normal
0.1
212
Normal
0.1
171
Tumor
0.1
191
Tumor
0.1
228
Normal
0.1
497
Tumor
0.1
686
Normal
0.1
723
Tumor
0.1
468
Normal
0.1
968
Normal
0.1
427
Tumor
0.1
964
Normal
0.1
913
Tumor
0.1
518
Normal
0.1
393
Tumor
0.1
558
Normal
0.1
284
Normal
0.1
1026
Normal
0.1
363
Tumor
0.1
636
Normal
0.0
392
Normal
0.0
513
Tumor
0.0
462
Normal
0.0
1016
Normal
0.0
161
Tumor
0.0
426
Normal
0.0
926
Normal
0.0
743
Tumor
0.0
474
Normal
0.0
866
Normal
0.0
955
Tumor
0.0
232
Normal
0.0
553
Tumor
0.0
554
Normal
0.0
351
Tumor
0.0
524
Normal
0.0
111
Normal
0.0
331
Tumor
0.0
978
Normal
0.0
415
Tumor
0.0
356
Normal
0.0
778
Normal
0.0
647
Tumor
0.0
414
Normal
0.0
1014
Normal
0.0
455
Tumor
0.0
1022
Normal
0.0
865
Tumor
0.0
918
Normal
0.0
727
Tumor
0.0
756
Normal
0.0
448
Normal
0.0
967
Tumor
0.0
665
Tumor
0.0
195
Tumor
0.0
396
Normal
0.0
642
Normal
0.0
966
Normal
0.0
922
Normal
0.0
722
Normal
0.0
376
Normal
0.0
786
Normal
-0.1
394
Normal
-0.1
451
Tumor
-0.1
148
Normal
-0.1
714
Normal
-0.1
1028
Normal
-0.1
954
Normal
-0.1
525
Tumor
-0.1
258
Normal
-0.1
628
Normal
-0.1
142
Normal
-0.1
738
Normal
-0.1
868
Normal
-0.1
816
Normal
-0.1
494
Normal
-0.1
924
Normal
-0.1
463
Tumor
-0.1
864
Normal
-0.1
877
Tumor
-0.1
466
Normal
-0.1
314
Normal
-0.1
114
Normal
-0.1
916
Normal
-0.1
224
Normal
-0.1
616
Normal
-0.1
564
Normal
-0.1
817
Tumor
-0.1
433
Tumor
-0.1
185
Tumor
-0.1
436
Normal
-0.1
431
Tumor
-0.1
568
Normal
-0.1
482
Normal
-0.1
572
Normal
-0.1
984
Normal
-0.1
283
Tumor
-0.1
915
Tumor
-0.1
492
Normal
-0.1
982
Normal
-0.1
141
Tumor
-0.1
534
Normal
-0.1
536
Normal
-0.1
617
Tumor
-0.1
958
Normal
-0.1
852
Normal
-0.1
1042
Normal
-0.1
428
Normal
-0.1
425
Tumor
-0.1
214
Normal
-0.1
262
Normal
-0.1
464
Normal
-0.1
484
Normal
-0.1
328
Normal
-0.1
824
Normal
-0.1
412
Normal
-0.1
533
Tumor
-0.1
515
Tumor
-0.1
957
Tumor
-0.1
884
Normal
-0.1
124
Normal
-0.1
126
Normal
-0.1
358
Normal
-0.1
432
Normal
-0.1
424
Normal
-0.1
386
Normal
-0.2
912
Normal
-0.2
472
Normal
-0.2
298
Normal
-0.2
785
Tumor
-0.2
375
Tumor
-0.2
977
Tumor
-0.2
661
Tumor
-0.2
421
Tumor
-0.2
488
Normal
-0.2
861
Tumor
-0.2
742
Normal
-0.2
172
Normal
-0.2
446
Normal
-0.2
136
Normal
-0.2
862
Normal
-0.2
746
Normal
-0.2
362
Normal
-0.2
952
Normal
-0.2
452
Normal
-0.2
332
Normal
-0.2
388
Normal
-0.2
698
Normal
-0.2
435
Tumor
-0.2
352
Normal
-0.2
976
Normal
-0.2
222
Normal
-0.2
138
Normal
-0.2
567
Tumor
-0.2
498
Normal
-0.2
132
Normal
-0.2
914
Normal
-0.2
1032
Normal
-0.2
535
Tumor
-0.2
938
Normal
-0.2
818
Normal
-0.2
261
Tumor
-0.2
664
Normal
-0.2
313
Tumor
-0.2
422
Normal
-0.2
648
Normal
-0.2
128
Normal
-0.2
223
Tumor
-0.2
434
Normal
-0.2
196
Normal
-0.2
364
Normal
-0.2
716
Normal
-0.2
911
Tumor
-0.2
858
Normal
-0.2
312
Normal
-0.2
478
Normal
-0.2
456
Normal
-0.2
391
Tumor
-0.2
546
Normal
-0.2
1043
Tumor
-0.2
188
Normal
-0.2
618
Normal
-0.2
574
Normal
-0.2
413
Tumor
-0.2
355
Tumor
-0.3
213
Tumor
-0.3
666
Normal
-0.3
563
Tumor
-0.3
956
Normal
-0.3
662
Normal
-0.3
162
Normal
-0.3
272
Normal
-0.3
1045
Tumor
-0.3
278
Normal
-0.3
516
Normal
-0.3
493
Tumor
-0.3
671
Tumor
-0.3
344
Normal
-0.3
1046
Normal
-0.3
874
Normal
-0.3
384
Normal
-0.3
917
Tumor
-0.3
857
Tumor
-0.3
367
Tumor
-0.3
975
Tumor
-0.3
483
Tumor
-0.3
366
Normal
-0.3
672
Normal
-0.3
873
Tumor
-0.3
365
Tumor
-0.3
271
Tumor
-0.3
268
Normal
-0.4
354
Normal
-0.4
341
Tumor
-0.4
297
Tumor
-0.4
342
Normal
-0.4
737
Tumor
-0.4
385
Tumor
-0.4
461
Tumor
-0.4
444
Normal
-0.4
186
Normal
-0.4
131
Tumor
-0.4
983
Tumor
-0.4
447
Tumor
-0.4
724
Normal
-0.4
112
Tumor
-0.4
267
Tumor
-0.4
943
Tumor
-0.4
878
Normal
-0.4
416
Normal
-0.4
192
Normal
-0.4
538
Normal
-0.4
867
Tumor
-0.4
663
Tumor
-0.4
477
Tumor
-0.4
311
Tumor
-0.5
882
Normal
-0.5
1013
Tumor
-0.5
221
Tumor
-0.5
953
Tumor
-0.5
627
Tumor
-0.5
277
Tumor
-0.5
1041
Tumor
-0.5
471
Tumor
-0.5
951
Tumor
-0.5
211
Tumor
-0.5
423
Tumor
-0.5
146
Normal
-0.5
383
Tumor
-0.6
744
Normal
-0.6
883
Tumor
-0.6
715
Tumor
-0.6
641
Tumor
-0.6
123
Tumor
-0.6
491
Tumor
-0.6
881
Tumor
-0.6
411
Tumor
-0.6
465
Tumor
-0.7
815
Tumor
-0.7
1031
Tumor
-0.7
965
Tumor
-0.7
545
Tumor
-0.7
921
Tumor
-0.8
571
Tumor
-0.8
695
Tumor
-1.0
685
Tumor
-1.0
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
