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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
ST14 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
19.9
Number of samples
362
Samples
Sample
Description
TPM
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
261.1
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
216.3
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
127.4
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
124.7
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
119.1
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
118.8
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
118.5
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
115.7
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
113.6
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
111.6
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
111.6
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
103.1
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
102.9
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
97.6
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
93.2
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
93.2
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
87.8
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
86.6
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
82.3
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
81.1
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
80.8
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
80.4
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
78.3
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
77.1
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
76.4
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
76.3
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
74.5
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
71.9
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
71.2
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
70.1
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
67.8
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
67.4
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
66.8
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
65.8
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
63.3
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
60.8
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
60.4
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
57.5
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
56.6
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
55.8
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
50.5
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
49.4
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
48.8
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
46.6
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
46.5
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
44.6
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
43.6
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
42.4
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
42.0
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
40.0
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
38.5
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
37.8
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
36.7
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
36.1
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
34.5
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
33.7
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
33.2
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
32.8
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
29.4
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
29.3
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
29.1
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
28.8
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
27.9
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
27.6
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
26.6
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
26.2
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
25.8
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
25.6
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
25.2
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
24.4
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
24.4
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
24.3
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
24.0
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
23.8
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
23.5
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
23.3
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
23.3
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
23.1
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
23.0
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
22.9
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
22.9
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
22.8
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
22.7
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
22.7
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
22.4
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
22.4
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
22.1
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
22.0
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
21.5
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
21.5
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
21.2
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
21.2
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
21.1
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
20.8
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
20.6
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
19.7
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
19.3
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
19.2
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
19.2
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
19.1
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
18.9
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
18.8
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
18.6
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
18.5
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
18.3
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
18.2
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
18.1
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
18.0
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
17.9
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
17.8
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
17.8
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
17.7
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
17.2
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
16.9
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
16.7
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
16.7
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
16.5
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
16.4
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
16.3
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
16.2
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
16.2
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
16.1
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
15.7
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
15.5
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
15.5
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
15.4
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
15.3
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
15.1
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
15.0
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
14.7
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
14.7
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
14.5
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
14.5
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
14.2
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
14.1
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
14.1
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
14.1
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
14.1
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
14.0
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
13.9
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
13.9
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
13.9
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
13.4
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
13.1
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
13.0
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
12.7
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
12.5
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
12.5
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
12.2
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
12.0
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
11.3
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
11.1
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
11.1
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
11.0
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
10.9
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
10.7
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
10.6
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
10.6
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
10.4
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
10.2
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
10.1
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
10.1
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
10.1
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
10.0
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
9.9
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
9.9
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
9.7
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
9.7
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
9.6
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
9.6
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
9.5
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
9.4
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
9.4
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
9.3
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
9.3
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
9.2
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
9.1
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
9.1
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
8.9
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
8.8
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
8.7
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
8.4
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
8.4
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
8.4
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
8.3
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
8.1
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
8.0
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
8.0
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
8.0
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
7.6
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
7.6
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
7.6
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
7.6
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
7.6
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
7.5
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
7.5
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
7.4
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
7.4
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
7.3
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
7.3
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
7.2
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
7.0
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
6.9
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
6.9
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
6.9
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
6.8
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
6.7
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
6.6
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
6.5
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
6.5
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
6.4
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
6.4
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
6.4
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
6.3
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
6.2
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
6.2
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
6.0
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
6.0
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
5.9
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
5.9
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
5.9
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
5.7
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
5.7
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
5.6
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
5.6
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
5.3
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
5.3
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
5.3
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
5.2
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
5.1
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
5.1
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
5.1
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
5.0
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
5.0
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
5.0
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
4.8
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
4.7
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
4.7
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
4.7
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
4.6
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
4.6
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
4.5
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
4.5
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
4.4
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
4.4
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
4.4
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
4.4
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
4.3
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
4.3
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
4.3
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
4.2
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
4.1
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
4.0
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
4.0
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
3.9
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
3.9
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
3.9
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
3.8
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
3.8
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
3.8
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
3.7
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
3.7
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
3.7
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
3.7
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
3.6
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
3.6
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
3.6
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
3.6
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
3.6
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
3.6
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
3.5
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
3.5
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
3.5
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
3.4
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
3.4
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
3.3
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
3.3
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
3.3
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
3.2
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
3.2
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
3.2
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
3.1
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
3.1
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
3.1
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
3.0
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
3.0
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
3.0
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
3.0
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
3.0
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
2.9
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
2.8
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
2.8
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
2.7
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
2.7
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
2.6
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
2.5
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
2.4
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
2.2
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
2.2
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
2.2
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
2.2
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
2.1
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
2.1
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
2.1
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
2.1
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
2.0
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
1.9
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
1.9
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
1.8
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
1.8
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
1.7
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
1.7
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
1.7
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
1.7
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
1.6
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
1.5
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
1.5
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
1.5
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
1.4
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
1.3
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
1.3
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
1.3
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
1.2
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
1.2
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
1.2
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
1.2
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
1.2
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
1.2
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
1.2
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
1.2
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
1.1
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
1.1
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
1.1
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
1.0
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
1.0
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
1.0
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
1.0
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
1.0
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
1.0
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
1.0
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
0.9
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
0.9
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
0.9
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
0.9
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
0.9
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
0.8
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
0.8
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
0.8
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
0.7
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
0.6
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
0.5
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
0.4
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
0.4
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
0.3
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
0.3
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
0.3
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
0.3
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
0.3
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
0.2
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
0.2
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
0.2
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
ST14 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
17.3
Number of samples
231
Samples
Sample
Description
TPM
DO45299
0 years, female, NA, stage:1, alive, 1440 days
332.1
DO45301
0 years, male, NA, stage:2, dead, 1440 days
251.2
DO45245
0 years, female, NA, stage:2, dead, 240 days
180.8
DO45211
0 years, male, NA, stage:3, alive, 240 days
129.6
DO45121
0 years, male, NA, stage:3, alive, 1530 days
115.6
DO23515
0 years, male, NA, stage:2, alive, 1230 days
97.5
DO45287
0 years, male, NA, stage:1, alive, 390 days
89.6
DO45303
0 years, female, NA, stage:3, alive, 990 days
85.7
DO45305
0 years, male, NA, stage:4, alive, 300 days
76.4
DO45279
0 years, male, NA, stage:3, alive, 1290 days
70.5
DO45283
0 years, male, NA, stage:3, alive, 510 days
68.7
DO45185
0 years, male, NA, stage:2, alive, 600 days
66.3
DO50811
0 years, male, NA, stage:1, alive, 450 days
65.5
DO48736
0 years, female, NA, stage:1, alive, 600 days
65.1
DO45243
0 years, female, NA, stage:3, alive, 930 days
61.2
DO23513
0 years, male, NA, stage:3, alive, 1200 days
57.9
DO45297
0 years, female, NA, stage:4, dead, 1260 days
57.0
DO45189
0 years, female, NA, stage:2, alive, 1200 days
55.5
DO45193
0 years, female, NA, stage:4, dead, 120 days
52.6
DO45137
0 years, male, NA, stage:1, alive, 1320 days
50.9
DO45285
0 years, male, NA, stage:3, alive, 480 days
49.1
DO45249
0 years, male, NA, stage:1, alive, 630 days
49.1
DO50855
0 years, male, NA, stage:2, alive, 570 days
47.0
DO50799
0 years, female, NA, stage:2, alive, 540 days
41.8
DO45289
0 years, female, NA, stage:3, alive, 360 days
41.1
DO23511
0 years, female, NA, stage:3, dead, 180 days
37.7
DO23528
0 years, female, NA, stage:2, alive, 1020 days
36.7
DO45251
0 years, female, NA, stage:2, alive, 900 days
35.7
DO45165
0 years, male, NA, stage:2, alive, 690 days
34.8
DO23547
0 years, male, NA, stage:1, alive, 1020 days
34.5
DO23523
0 years, male, NA, stage:3, alive, 1080 days
30.6
DO45307
0 years, female, NA, stage:4, dead, 240 days
28.2
DO23535
0 years, male, NA, stage:1, alive, 960 days
25.5
DO50805
0 years, male, NA, stage:2, alive, 690 days
24.9
DO48697
0 years, female, NA, stage:2, dead, 810 days
23.9
DO23552
0 years, female, NA, stage:1, alive, 810 days
23.6
DO50785
0 years, male, NA, stage:4, dead, 90 days
23.5
DO45219
0 years, male, NA, stage:2, alive, 1080 days
22.5
DO45095
0 years, male, NA, stage:2, alive, 1620 days
21.8
DO50850
0 years, male, NA, stage:3, alive, 720 days
21.4
DO50839
0 years, female, NA, stage:3, alive, 330 days
21.2
DO23519
0 years, male, NA, stage:3, alive, 630 days
21.0
DO45173
0 years, male, NA, stage:3, alive, 1170 days
20.5
DO48681
0 years, male, NA, stage:2, alive, 900 days
20.4
DO45103
0 years, male, NA, stage:3, alive, 450 days
19.7
DO23526
0 years, male, NA, stage:3, alive, 1050 days
19.5
DO48746
0 years, male, NA, stage:3, alive, 570 days
19.2
DO45177
0 years, female, NA, stage:3, alive, 1260 days
18.4
DO50778
0 years, male, NA, stage:4, alive, 630 days
18.2
DO23540
0 years, male, NA, stage:1, alive, 750 days
18.0
DO50783
0 years, male, NA, stage:3, alive, 480 days
18.0
DO48747
0 years, male, NA, stage:3, alive, 540 days
17.9
DO45269
0 years, male, NA, stage:3, alive, 750 days
17.3
DO48720
0 years, female, NA, stage:2, alive, 570 days
17.3
DO45097
0 years, male, NA, stage:3, alive, 1620 days
16.3
DO48751
0 years, male, NA, stage:2, dead, 480 days
16.3
DO50809
0 years, male, NA, stage:3, dead, 720 days
15.9
DO45267
0 years, male, NA, stage:3, dead, 570 days
15.7
DO45241
0 years, male, NA, stage:1, alive, 1080 days
15.6
DO50776
0 years, male, NA, stage:1, alive, 690 days
15.6
DO50806
0 years, male, NA, stage:4, alive, 540 days
15.5
DO45275
0 years, male, NA, stage:3, dead, 10 days
15.4
DO48757
0 years, female, NA, stage:3, alive, 480 days
14.9
DO45227
0 years, female, NA, stage:2, alive, 1020 days
14.9
DO45153
0 years, female, NA, stage:2, alive, 1380 days
14.9
DO45281
0 years, male, NA, stage:4, alive, 750 days
14.4
DO23527
0 years, male, NA, stage:1, alive, 1050 days
13.9
DO45143
0 years, male, NA, stage:3, alive, 1290 days
13.6
DO45139
0 years, male, NA, stage:3, alive, 1320 days
13.4
DO45223
0 years, male, NA, stage:4, alive, 1020 days
12.9
DO48723
0 years, male, NA, stage:1, alive, 600 days
12.6
DO45096
0 years, male, NA, stage:2, dead, 1290 days
12.6
DO48733
0 years, male, NA, stage:2, alive, 600 days
12.6
DO23524
0 years, female, NA, stage:2, alive, 1050 days
12.3
DO48706
0 years, male, NA, stage:2, alive, 870 days
12.1
DO45247
0 years, female, NA, stage:2, alive, 210 days
12.1
DO45155
0 years, male, NA, stage:2, alive, 2160 days
12.1
DO45092
0 years, male, NA, stage:4, dead, 1200 days
12.1
DO45217
0 years, female, NA, stage:3, dead, 270 days
12.0
DO45233
0 years, male, NA, stage:3, alive, 900 days
11.8
DO45181
0 years, female, NA, stage:2, alive, 1200 days
11.7
DO45133
0 years, male, NA, stage:3, dead, 660 days
11.4
DO48730
0 years, female, NA, stage:2, alive, 630 days
11.1
DO48742
0 years, male, NA, stage:2, alive, 600 days
11.0
DO48695
0 years, male, NA, stage:2, alive, 720 days
10.9
DO50825
0 years, male, NA, stage:2, alive, 390 days
10.9
DO50820
0 years, female, NA, stage:3, alive, 510 days
10.5
DO45263
0 years, male, NA, stage:3, dead, 270 days
10.5
DO45105
0 years, male, NA, stage:1, alive, 1680 days
10.3
DO45101
0 years, male, NA, stage:2, alive, 1680 days
10.2
DO50818
0 years, male, NA, stage:2, alive, 510 days
10.0
DO48743
0 years, female, NA, stage:2, alive, 570 days
9.5
DO45231
0 years, male, NA, stage:2, alive, 930 days
9.3
DO23514
0 years, male, NA, stage:2, alive, 1290 days
9.2
DO45187
0 years, female, NA, stage:1, alive, 1260 days
9.2
DO45123
0 years, female, NA, stage:2, dead, 570 days
9.0
DO23546
0 years, male, NA, stage:2, alive, 1050 days
9.0
DO45277
0 years, male, NA, stage:3, alive, 600 days
8.9
DO50793
0 years, male, NA, stage:4, alive, 540 days
8.7
DO45215
0 years, male, NA, stage:2, alive, 1170 days
8.7
DO48677
0 years, male, NA, stage:3, alive, 1140 days
8.6
DO45169
0 years, male, NA, stage:3, alive, 1350 days
8.5
DO50787
0 years, male, NA, stage:3, alive, 480 days
8.5
DO23543
0 years, male, NA, stage:2, alive, 1020 days
8.5
DO48717
0 years, male, NA, stage:4, dead, 180 days
8.4
DO23537
0 years, male, NA, stage:2, dead, 900 days
8.2
DO23531
0 years, female, NA, stage:3, alive, 900 days
8.2
DO48728
0 years, female, NA, stage:2, alive, 150 days
8.2
DO23510
0 years, female, NA, stage:2, alive, 870 days
8.2
DO45175
0 years, male, NA, stage:2, alive, 1140 days
8.1
DO23508
0 years, female, NA, stage:2, alive, 390 days
8.0
DO50814
0 years, male, NA, stage:3, alive, 420 days
8.0
DO23530
0 years, male, NA, stage:4, dead, 180 days
7.9
DO45135
0 years, male, NA, stage:1, alive, 1410 days
7.9
DO48682
0 years, female, NA, stage:3, dead, 120 days
7.8
DO50804
0 years, male, NA, stage:2, alive, 720 days
7.8
DO48712
0 years, male, NA, stage:2, alive, 810 days
7.8
DO23541
0 years, male, NA, stage:2, alive, 930 days
7.7
DO50829
0 years, male, NA, stage:3, alive, 570 days
7.6
DO50813
0 years, male, NA, stage:2, alive, 420 days
7.5
DO45161
0 years, male, NA, stage:2, dead, 540 days
7.0
DO45213
0 years, male, NA, stage:1, alive, 1200 days
7.0
DO23549
0 years, male, NA, stage:3, alive, 990 days
6.9
DO45094
0 years, male, NA, stage:3, alive, 1650 days
6.9
DO45113
0 years, male, NA, stage:3, alive, 1560 days
6.6
DO45157
0 years, male, NA, stage:2, alive, 1980 days
6.6
DO45207
0 years, male, NA, stage:1, alive, 1050 days
6.6
DO50817
0 years, male, NA, stage:2, alive, 390 days
6.5
DO48716
0 years, male, NA, stage:2, alive, 720 days
6.4
DO23529
0 years, male, NA, stage:4, alive, 930 days
6.4
DO48672
0 years, male, NA, stage:2, alive, 450 days
6.1
DO23548
0 years, female, NA, stage:1, alive, 840 days
5.9
DO45125
0 years, male, NA, stage:3, alive, 1680 days
5.9
DO45273
0 years, male, NA, stage:2, alive, 480 days
5.8
DO45229
0 years, male, NA, stage:1, alive, 990 days
5.8
DO45183
0 years, female, NA, stage:2, dead, 570 days
5.8
DO45221
0 years, female, NA, stage:4, dead, 390 days
5.7
DO23544
0 years, male, NA, stage:2, alive, 960 days
5.7
DO45197
0 years, male, NA, stage:2, alive, 1170 days
5.6
DO48732
0 years, male, NA, stage:3, alive, 630 days
5.6
DO23532
0 years, female, NA, stage:1, alive, 960 days
5.5
DO45179
0 years, female, NA, stage:2, alive, 600 days
5.4
DO48761
0 years, male, NA, stage:2, alive, 870 days
5.3
DO45191
0 years, female, NA, stage:2, alive, 1200 days
5.2
DO45141
0 years, male, NA, stage:2, alive, 1320 days
5.1
DO50802
0 years, male, NA, stage:2, alive, 930 days
5.0
DO48715
0 years, female, NA, stage:2, dead, 690 days
5.0
DO45259
0 years, male, NA, stage:3, alive, 330 days
4.9
DO45149
0 years, female, NA, stage:2, alive, 1260 days
4.8
DO45107
0 years, female, NA, stage:2, alive, 1710 days
4.8
DO45099
0 years, male, NA, stage:3, alive, 1590 days
4.5
DO45205
0 years, female, NA, stage:2, dead, 90 days
4.3
DO45109
0 years, male, NA, stage:2, alive, 1590 days
4.1
DO45235
0 years, female, NA, stage:1, alive, 900 days
4.1
DO23550
0 years, male, NA, stage:1, alive, 990 days
3.9
DO50774
0 years, female, NA, stage:2, alive, 720 days
3.7
DO45129
0 years, male, NA, stage:3, alive, 1470 days
3.6
DO50816
0 years, male, NA, stage:2, alive, 390 days
3.6
DO45167
0 years, male, NA, stage:2, dead, 1440 days
3.6
DO48759
0 years, male, NA, stage:3, alive, 720 days
3.5
DO50819
0 years, female, NA, stage:2, alive, 510 days
3.5
DO45171
0 years, male, NA, stage:3, alive, 600 days
3.5
DO45093
0 years, male, NA, stage:2, dead, 720 days
3.5
DO23551
0 years, male, NA, stage:3, dead, 150 days
3.5
DO45265
0 years, male, NA, stage:3, alive, 1020 days
3.4
DO23538
0 years, male, NA, stage:2, alive, 450 days
3.4
DO45091
0 years, male, NA, stage:2, dead, 1320 days
3.3
DO48760
0 years, female, NA, stage:2, alive, 690 days
3.3
DO50822
0 years, male, NA, stage:2, alive, 510 days
3.2
DO48741
0 years, male, NA, stage:3, alive, 240 days
3.2
DO45201
0 years, male, NA, stage:1, alive, 900 days
3.1
DO45127
0 years, male, NA, stage:3, dead, 420 days
3.1
DO48700
0 years, female, NA, stage:2, alive, 810 days
3.0
DO48725
0 years, male, NA, stage:1, alive, 780 days
3.0
DO48693
0 years, male, NA, stage:2, alive, 900 days
2.9
DO23517
0 years, male, NA, stage:2, alive, 1200 days
2.9
DO45145
0 years, male, NA, stage:3, dead, 60 days
2.8
DO45255
0 years, male, NA, stage:3, alive, 720 days
2.7
DO23545
0 years, male, NA, stage:2, dead, 570 days
2.6
DO50803
0 years, female, NA, stage:1, alive, 540 days
2.4
DO50845
0 years, male, NA, stage:3, alive, 210 days
2.3
DO48737
0 years, male, NA, stage:1, alive, 720 days
2.3
DO48701
0 years, male, NA, stage:2, alive, 780 days
2.2
DO50840
0 years, male, NA, stage:2, alive, 330 days
2.1
DO45117
0 years, female, NA, stage:2, dead, 1110 days
2.1
DO45119
0 years, male, NA, stage:3, dead, 510 days
2.0
DO45253
0 years, male, NA, stage:2, alive, 870 days
2.0
DO45115
0 years, male, NA, stage:2, alive, 840 days
2.0
DO45225
0 years, male, NA, stage:1, alive, 1050 days
1.8
DO48679
0 years, male, NA, stage:2, alive, 1200 days
1.8
DO45131
0 years, male, NA, stage:4, dead, 360 days
1.7
DO48674
0 years, male, NA, stage:2, alive, 1260 days
1.7
DO23534
0 years, male, NA, stage:2, alive, 840 days
1.6
DO48721
0 years, female, NA, stage:1, alive, 900 days
1.6
DO45257
0 years, male, NA, stage:3, alive, 810 days
1.4
DO50798
0 years, male, NA, stage:3, dead, 30 days
1.4
DO45239
0 years, male, NA, stage:2, alive, 870 days
1.4
DO50800
0 years, male, NA, stage:2, alive, 510 days
1.3
DO50815
0 years, male, NA, stage:3, alive, 150 days
1.3
DO48704
0 years, female, NA, stage:3, alive, 750 days
1.2
DO227643
0 years, male, NA, stage:2, alive, 1260 days
1.2
DO45111
0 years, male, NA, stage:2, alive, 1590 days
1.2
DO50808
0 years, male, NA, stage:2, alive, 570 days
1.1
DO50857
0 years, male, NA, stage:2, alive, 210 days
1.0
DO45209
0 years, male, NA, stage:4, alive, 1350 days
1.0
DO45203
0 years, female, NA, stage:2, alive, 1170 days
1.0
DO45195
0 years, male, NA, stage:1, alive, 390 days
0.9
DO227801
0 years, female, NA, stage:1, alive, 660 days
0.9
DO23516
0 years, male, NA, stage:3, dead, 20 days
0.9
DO23539
0 years, male, NA, stage:1, alive, 1110 days
0.8
DO48719
0 years, male, NA, stage:2, alive, 690 days
0.8
DO50807
0 years, male, NA, stage:1, alive, 540 days
0.8
DO45159
0 years, male, NA, stage:3, alive, 1470 days
0.8
DO45199
0 years, female, NA, stage:2, alive, 1350 days
0.7
DO45261
0 years, male, NA, stage:3, alive, 990 days
0.7
DO23512
0 years, male, NA, stage:1, alive, 1260 days
0.7
DO23521
0 years, male, NA, stage:3, alive, 1110 days
0.7
DO48727
0 years, female, NA, stage:2, dead, 390 days
0.7
DO23509
0 years, male, NA, stage:3, dead, 780 days
0.7
DO50791
0 years, female, NA, stage:1, dead, 480 days
0.7
DO23542
0 years, male, NA, stage:3, alive, 960 days
0.7
DO23533
0 years, male, NA, stage:2, alive, 900 days
0.6
DO50859
0 years, male, NA, stage:2, alive, 180 days
0.5
DO23525
0 years, male, NA, stage:4, alive, 1050 days
0.5
DO23536
0 years, male, NA, stage:2, alive, 930 days
0.5
DO23518
0 years, male, NA, stage:2, alive, 1320 days
0.4
DO45163
0 years, male, NA, stage:2, alive, 960 days
0.3
DO50789
0 years, female, NA, stage:2, alive, 570 days
0.3
DO45237
0 years, male, NA, stage:2, alive, 900 days
0.2
DO50844
0 years, male, NA, stage:4, alive, 300 days
0.2
DO50832
0 years, male, NA, stage:3, alive, 90 days
0.1
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
416
Normal
2.7
921
Tumor
2.4
471
Tumor
2.1
553
Tumor
1.8
641
Tumor
1.7
414
Normal
1.6
131
Tumor
1.6
975
Tumor
1.5
1031
Tumor
1.5
817
Tumor
1.4
881
Tumor
1.4
883
Tumor
1.3
452
Normal
1.3
1021
Tumor
1.2
328
Normal
1.2
951
Tumor
1.1
491
Tumor
1.0
473
Tumor
1.0
741
Tumor
0.9
331
Tumor
0.9
917
Tumor
0.9
211
Tumor
0.8
135
Tumor
0.8
385
Tumor
0.8
911
Tumor
0.8
162
Normal
0.7
271
Tumor
0.7
391
Tumor
0.7
483
Tumor
0.6
171
Tumor
0.6
1025
Tumor
0.5
984
Normal
0.5
426
Normal
0.5
172
Normal
0.5
963
Tumor
0.5
395
Tumor
0.4
186
Normal
0.4
983
Tumor
0.4
221
Tumor
0.4
922
Normal
0.4
161
Tumor
0.3
1042
Normal
0.3
916
Normal
0.3
285
Tumor
0.3
464
Normal
0.3
478
Normal
0.3
492
Normal
0.2
422
Normal
0.2
268
Normal
0.2
538
Normal
0.2
976
Normal
0.2
618
Normal
0.2
386
Normal
0.2
148
Normal
0.2
956
Normal
0.2
258
Normal
0.2
1032
Normal
0.2
212
Normal
0.2
978
Normal
0.2
262
Normal
0.2
227
Tumor
0.2
272
Normal
0.1
938
Normal
0.1
861
Tumor
0.1
456
Normal
0.1
147
Tumor
0.1
642
Normal
0.1
925
Tumor
0.1
877
Tumor
0.1
466
Normal
0.1
468
Normal
0.1
396
Normal
0.1
534
Normal
0.1
428
Normal
0.1
388
Normal
0.1
387
Tumor
0.1
462
Normal
0.0
231
Tumor
0.0
284
Normal
0.0
224
Normal
0.0
924
Normal
0.0
977
Tumor
0.0
232
Normal
0.0
498
Normal
0.0
394
Normal
0.0
392
Normal
0.0
697
Tumor
0.0
424
Normal
0.0
545
Tumor
0.0
1026
Normal
0.0
1022
Normal
0.0
554
Normal
0.0
851
Tumor
0.0
852
Normal
0.0
926
Normal
0.0
393
Tumor
0.0
474
Normal
0.0
918
Normal
-0.1
472
Normal
-0.1
957
Tumor
-0.1
546
Normal
-0.1
944
Normal
-0.1
185
Tumor
-0.1
257
Tumor
-0.1
482
Normal
-0.1
187
Tumor
-0.1
533
Tumor
-0.1
884
Normal
-0.1
1028
Normal
-0.1
954
Normal
-0.1
536
Normal
-0.1
527
Tumor
-0.1
138
Normal
-0.1
528
Normal
-0.1
1015
Tumor
-0.1
312
Normal
-0.1
132
Normal
-0.1
816
Normal
-0.2
461
Tumor
-0.2
146
Normal
-0.2
964
Normal
-0.2
267
Tumor
-0.2
228
Normal
-0.2
283
Tumor
-0.2
488
Normal
-0.2
412
Normal
-0.2
863
Tumor
-0.2
145
Tumor
-0.2
1041
Tumor
-0.2
915
Tumor
-0.3
823
Tumor
-0.3
878
Normal
-0.3
1016
Normal
-0.3
261
Tumor
-0.3
874
Normal
-0.3
952
Normal
-0.3
136
Normal
-0.3
277
Tumor
-0.3
447
Tumor
-0.3
494
Normal
-0.3
967
Tumor
-0.3
671
Tumor
-0.3
196
Normal
-0.3
914
Normal
-0.3
311
Tumor
-0.3
356
Normal
-0.3
477
Tumor
-0.3
188
Normal
-0.3
953
Tumor
-0.3
628
Normal
-0.3
882
Normal
-0.4
493
Tumor
-0.4
968
Normal
-0.4
966
Normal
-0.4
332
Normal
-0.4
913
Tumor
-0.4
137
Tumor
-0.4
912
Normal
-0.4
943
Tumor
-0.4
214
Normal
-0.4
192
Normal
-0.4
286
Normal
-0.4
958
Normal
-0.4
481
Tumor
-0.4
223
Tumor
-0.4
278
Normal
-0.4
815
Tumor
-0.4
728
Normal
-0.4
484
Normal
-0.5
1045
Tumor
-0.5
535
Tumor
-0.5
982
Normal
-0.5
868
Normal
-0.5
142
Normal
-0.5
448
Normal
-0.5
955
Tumor
-0.5
818
Normal
-0.5
218
Normal
-0.5
627
Tumor
-0.5
314
Normal
-0.5
635
Tumor
-0.5
537
Tumor
-0.5
698
Normal
-0.5
217
Tumor
-0.5
451
Tumor
-0.6
857
Tumor
-0.6
858
Normal
-0.6
981
Tumor
-0.6
965
Tumor
-0.6
465
Tumor
-0.6
364
Normal
-0.6
824
Normal
-0.6
141
Tumor
-0.6
616
Normal
-0.6
455
Tumor
-0.6
313
Tumor
-0.6
636
Normal
-0.6
423
Tumor
-0.6
1027
Tumor
-0.7
1044
Normal
-0.7
617
Tumor
-0.7
497
Tumor
-0.7
1046
Normal
-0.7
862
Normal
-0.7
1014
Normal
-0.7
327
Tumor
-0.7
615
Tumor
-0.7
191
Tumor
-0.7
195
Tumor
-0.7
867
Tumor
-0.7
866
Normal
-0.8
421
Tumor
-0.8
298
Normal
-0.8
865
Tumor
-0.8
738
Normal
-0.8
427
Tumor
-0.8
873
Tumor
-0.8
222
Normal
-0.9
297
Tumor
-0.9
1013
Tumor
-0.9
864
Normal
-0.9
923
Tumor
-0.9
937
Tumor
-0.9
723
Tumor
-1.0
463
Tumor
-1.0
647
Tumor
-1.0
425
Tumor
-1.1
355
Tumor
-1.1
413
Tumor
-1.1
724
Normal
-1.1
467
Tumor
-1.1
744
Normal
-1.2
415
Tumor
-1.2
213
Tumor
-1.2
411
Tumor
-1.2
363
Tumor
-1.2
664
Normal
-1.2
662
Normal
-1.3
727
Tumor
-1.3
666
Normal
-1.3
665
Tumor
-1.3
737
Tumor
-1.4
661
Tumor
-1.4
663
Tumor
-1.4
742
Normal
-1.4
648
Normal
-1.4
1043
Tumor
-1.4
672
Normal
-1.6
487
Tumor
-1.7
743
Tumor
-2.0
746
Normal
-2.4
778
Normal
-2.4
745
Tumor
-2.6
777
Tumor
-2.6
786
Normal
-2.7
756
Normal
-3.0
813
Tumor
-3.2
785
Tumor
-3.3
755
Tumor
-3.3
814
Normal
-3.4
351
Tumor
N/A
352
Normal
N/A
111
Normal
N/A
353
Tumor
N/A
112
Tumor
N/A
354
Normal
N/A
113
Tumor
N/A
114
Normal
N/A
357
Tumor
N/A
358
Normal
N/A
361
Tumor
N/A
362
Normal
N/A
123
Tumor
N/A
365
Tumor
N/A
124
Normal
N/A
366
Normal
N/A
125
Tumor
N/A
367
Tumor
N/A
126
Normal
N/A
368
Normal
N/A
127
Tumor
N/A
128
Normal
N/A
375
Tumor
N/A
376
Normal
N/A
383
Tumor
N/A
384
Normal
N/A
713
Tumor
N/A
714
Normal
N/A
715
Tumor
N/A
716
Normal
N/A
721
Tumor
N/A
722
Normal
N/A
513
Tumor
N/A
514
Normal
N/A
515
Tumor
N/A
516
Normal
N/A
517
Tumor
N/A
518
Normal
N/A
523
Tumor
N/A
524
Normal
N/A
525
Tumor
N/A
526
Normal
N/A
431
Tumor
N/A
432
Normal
N/A
433
Tumor
N/A
434
Normal
N/A
435
Tumor
N/A
436
Normal
N/A
557
Tumor
N/A
558
Normal
N/A
563
Tumor
N/A
443
Tumor
N/A
564
Normal
N/A
685
Tumor
N/A
444
Normal
N/A
686
Normal
N/A
445
Tumor
N/A
446
Normal
N/A
567
Tumor
N/A
568
Normal
N/A
571
Tumor
N/A
572
Normal
N/A
573
Tumor
N/A
574
Normal
N/A
695
Tumor
N/A
696
Normal
N/A
341
Tumor
N/A
342
Normal
N/A
343
Tumor
N/A
344
Normal
N/A
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
