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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
LAMTOR1 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
77.7
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
202.1
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
194.9
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
187.7
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
183.6
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
176.6
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
171.3
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
167.1
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
160.5
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
154.6
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
151.2
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
148.7
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
140.2
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
137.1
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
134.9
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
133.8
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
133.0
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
131.7
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
130.7
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
130.6
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
130.3
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
127.9
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
125.9
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
123.0
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
122.8
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
122.1
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
121.6
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
121.4
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
119.9
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
118.6
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
118.0
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
117.3
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
116.9
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
116.6
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
114.3
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
113.4
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
111.6
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
111.2
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
109.9
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
109.9
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
107.1
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
107.1
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
106.9
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
106.7
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
106.6
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
106.5
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
106.4
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
106.3
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
106.1
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
105.5
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
105.1
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
105.1
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
105.1
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
104.7
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
104.6
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
103.5
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
103.4
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
103.3
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
102.7
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
102.4
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
102.4
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
102.2
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
102.1
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
101.9
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
101.8
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
101.1
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
101.0
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
100.6
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
100.5
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
99.4
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
99.4
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
98.6
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
98.6
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
98.5
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
98.2
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
97.8
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
96.8
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
96.8
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
95.0
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
94.9
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
94.8
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
93.9
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
93.8
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
93.6
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
93.4
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
92.9
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
92.7
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
92.5
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
92.4
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
91.1
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
91.0
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
90.9
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
90.5
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
89.6
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
89.6
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
89.5
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
89.3
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
89.0
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
88.7
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
88.6
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
88.5
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
88.5
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
88.3
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
88.2
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
88.1
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
86.6
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
86.6
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
85.7
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
85.7
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
85.4
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
85.3
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
85.1
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
85.1
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
85.1
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
84.6
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
84.3
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
84.3
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
84.2
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
83.7
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
83.5
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
83.4
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
83.3
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
83.1
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
83.0
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
82.8
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
82.7
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
82.6
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
82.0
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
81.7
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
81.4
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
81.1
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
81.0
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
80.9
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
80.9
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
80.9
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
80.5
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
80.4
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
80.3
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
79.9
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
79.6
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
78.8
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
78.8
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
78.8
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
78.8
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
78.6
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
78.4
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
78.4
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
78.2
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
78.2
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
78.1
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
77.8
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
77.6
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
77.5
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
77.4
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
77.2
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
77.1
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
76.6
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
76.5
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
76.3
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
76.2
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
75.9
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
75.8
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
75.7
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
75.7
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
75.4
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
74.8
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
74.8
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
74.6
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
74.6
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
74.6
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
74.3
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
74.1
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
74.1
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
73.9
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
73.8
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
73.7
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
73.5
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
73.5
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
73.4
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
73.4
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
73.3
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
73.3
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
73.1
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
73.1
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
72.8
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
72.8
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
72.1
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
72.0
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
71.9
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
71.8
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
71.7
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
71.7
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
71.5
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
71.4
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
71.3
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
71.3
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
71.2
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
71.2
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
71.0
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
70.9
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
70.8
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
70.6
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
70.4
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
70.4
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
70.2
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
70.0
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
69.8
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
69.6
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
69.5
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
69.4
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
69.4
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
69.4
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
69.0
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
68.7
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
68.4
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
68.2
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
68.1
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
68.1
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
68.0
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
67.9
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
67.9
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
67.8
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
67.6
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
67.2
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
67.1
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
66.9
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
66.4
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
66.2
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
65.8
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
65.7
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
65.4
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
65.0
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
64.9
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
64.9
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
64.7
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
64.6
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
64.5
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
64.5
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
64.4
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
64.4
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
64.0
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
63.9
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
63.8
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
63.7
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
63.6
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
63.6
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
63.5
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
63.2
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
63.1
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
62.6
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
62.2
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
62.1
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
61.9
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
61.9
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
61.9
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
61.8
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
61.5
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
61.3
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
61.0
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
60.3
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
60.0
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
59.7
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
59.5
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
59.3
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
59.3
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
59.2
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
59.0
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
59.0
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
58.9
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
58.9
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
58.7
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
58.5
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
58.3
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
58.1
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
58.1
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
58.1
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
58.0
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
58.0
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
58.0
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
57.7
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
57.6
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
57.5
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
57.5
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
57.5
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
57.4
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
57.4
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
57.3
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
57.0
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
56.9
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
56.8
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
56.6
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
56.6
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
56.4
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
56.2
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
55.8
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
55.7
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
55.7
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
55.3
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
55.1
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
54.9
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
54.5
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
54.5
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
54.3
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
54.2
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
54.1
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
53.8
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
53.0
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
52.8
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
52.7
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
52.6
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
52.4
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
51.8
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
51.5
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
51.5
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
51.1
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
50.8
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
50.6
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
50.4
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
50.1
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
50.1
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
49.4
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
48.2
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
48.0
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
47.7
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
47.6
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
47.6
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
47.0
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
46.7
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
46.7
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
46.5
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
46.0
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
45.7
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
45.4
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
45.2
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
45.0
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
44.6
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
44.4
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
44.3
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
43.9
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
43.9
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
43.1
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
42.7
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
42.4
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
40.4
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
39.6
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
39.6
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
39.5
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
39.4
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
39.2
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
38.7
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
38.2
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
37.9
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
37.8
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
36.6
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
35.7
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
35.7
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
34.7
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
32.9
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
31.6
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
30.9
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
30.4
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
22.8
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
LAMTOR1 is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
52.4
Number of samples
231
Samples
Sample
Description
TPM
DO45161
0 years, male, NA, stage:2, dead, 540 days
222.5
DO45217
0 years, female, NA, stage:3, dead, 270 days
211.1
DO23540
0 years, male, NA, stage:1, alive, 750 days
162.4
DO45209
0 years, male, NA, stage:4, alive, 1350 days
159.9
DO48747
0 years, male, NA, stage:3, alive, 540 days
153.6
DO23508
0 years, female, NA, stage:2, alive, 390 days
134.5
DO50839
0 years, female, NA, stage:3, alive, 330 days
130.2
DO50829
0 years, male, NA, stage:3, alive, 570 days
118.1
DO45153
0 years, female, NA, stage:2, alive, 1380 days
107.5
DO50806
0 years, male, NA, stage:4, alive, 540 days
105.3
DO45131
0 years, male, NA, stage:4, dead, 360 days
102.8
DO23526
0 years, male, NA, stage:3, alive, 1050 days
102.3
DO45303
0 years, female, NA, stage:3, alive, 990 days
101.2
DO50799
0 years, female, NA, stage:2, alive, 540 days
98.7
DO45119
0 years, male, NA, stage:3, dead, 510 days
98.5
DO45092
0 years, male, NA, stage:4, dead, 1200 days
97.3
DO45275
0 years, male, NA, stage:3, dead, 10 days
96.0
DO23519
0 years, male, NA, stage:3, alive, 630 days
94.9
DO23511
0 years, female, NA, stage:3, dead, 180 days
94.2
DO48751
0 years, male, NA, stage:2, dead, 480 days
93.9
DO45305
0 years, male, NA, stage:4, alive, 300 days
93.4
DO23523
0 years, male, NA, stage:3, alive, 1080 days
91.0
DO45285
0 years, male, NA, stage:3, alive, 480 days
89.9
DO45289
0 years, female, NA, stage:3, alive, 360 days
87.2
DO45267
0 years, male, NA, stage:3, dead, 570 days
85.9
DO45307
0 years, female, NA, stage:4, dead, 240 days
83.1
DO23515
0 years, male, NA, stage:2, alive, 1230 days
82.6
DO45299
0 years, female, NA, stage:1, alive, 1440 days
81.7
DO45205
0 years, female, NA, stage:2, dead, 90 days
79.0
DO45277
0 years, male, NA, stage:3, alive, 600 days
78.4
DO23525
0 years, male, NA, stage:4, alive, 1050 days
76.5
DO45239
0 years, male, NA, stage:2, alive, 870 days
74.2
DO50791
0 years, female, NA, stage:1, dead, 480 days
73.5
DO48757
0 years, female, NA, stage:3, alive, 480 days
72.0
DO48717
0 years, male, NA, stage:4, dead, 180 days
70.7
DO45249
0 years, male, NA, stage:1, alive, 630 days
70.2
DO48700
0 years, female, NA, stage:2, alive, 810 days
69.6
DO45287
0 years, male, NA, stage:1, alive, 390 days
68.1
DO45273
0 years, male, NA, stage:2, alive, 480 days
68.0
DO45211
0 years, male, NA, stage:3, alive, 240 days
67.7
DO48723
0 years, male, NA, stage:1, alive, 600 days
67.2
DO45265
0 years, male, NA, stage:3, alive, 1020 days
66.9
DO45155
0 years, male, NA, stage:2, alive, 2160 days
66.2
DO50802
0 years, male, NA, stage:2, alive, 930 days
65.3
DO50809
0 years, male, NA, stage:3, dead, 720 days
64.2
DO45093
0 years, male, NA, stage:2, dead, 720 days
64.0
DO23535
0 years, male, NA, stage:1, alive, 960 days
63.3
DO50793
0 years, male, NA, stage:4, alive, 540 days
63.0
DO48672
0 years, male, NA, stage:2, alive, 450 days
62.9
DO45297
0 years, female, NA, stage:4, dead, 1260 days
62.9
DO50785
0 years, male, NA, stage:4, dead, 90 days
62.7
DO48730
0 years, female, NA, stage:2, alive, 630 days
61.9
DO48697
0 years, female, NA, stage:2, dead, 810 days
61.6
DO48701
0 years, male, NA, stage:2, alive, 780 days
60.4
DO45257
0 years, male, NA, stage:3, alive, 810 days
60.4
DO50844
0 years, male, NA, stage:4, alive, 300 days
60.0
DO50778
0 years, male, NA, stage:4, alive, 630 days
59.9
DO50822
0 years, male, NA, stage:2, alive, 510 days
59.7
DO50814
0 years, male, NA, stage:3, alive, 420 days
59.6
DO50805
0 years, male, NA, stage:2, alive, 690 days
59.1
DO48715
0 years, female, NA, stage:2, dead, 690 days
58.9
DO48759
0 years, male, NA, stage:3, alive, 720 days
58.9
DO50776
0 years, male, NA, stage:1, alive, 690 days
58.2
DO23510
0 years, female, NA, stage:2, alive, 870 days
58.1
DO50783
0 years, male, NA, stage:3, alive, 480 days
57.9
DO45219
0 years, male, NA, stage:2, alive, 1080 days
57.7
DO45269
0 years, male, NA, stage:3, alive, 750 days
57.4
DO50840
0 years, male, NA, stage:2, alive, 330 days
56.9
DO50819
0 years, female, NA, stage:2, alive, 510 days
56.3
DO45139
0 years, male, NA, stage:3, alive, 1320 days
55.8
DO45165
0 years, male, NA, stage:2, alive, 690 days
55.8
DO50808
0 years, male, NA, stage:2, alive, 570 days
55.3
DO48719
0 years, male, NA, stage:2, alive, 690 days
55.0
DO45185
0 years, male, NA, stage:2, alive, 600 days
54.9
DO45183
0 years, female, NA, stage:2, dead, 570 days
53.9
DO45135
0 years, male, NA, stage:1, alive, 1410 days
53.8
DO45221
0 years, female, NA, stage:4, dead, 390 days
53.8
DO45145
0 years, male, NA, stage:3, dead, 60 days
53.2
DO45127
0 years, male, NA, stage:3, dead, 420 days
53.0
DO45301
0 years, male, NA, stage:2, dead, 1440 days
52.0
DO23524
0 years, female, NA, stage:2, alive, 1050 days
51.9
DO45179
0 years, female, NA, stage:2, alive, 600 days
51.8
DO45103
0 years, male, NA, stage:3, alive, 450 days
51.5
DO48681
0 years, male, NA, stage:2, alive, 900 days
51.4
DO23530
0 years, male, NA, stage:4, dead, 180 days
51.2
DO45143
0 years, male, NA, stage:3, alive, 1290 days
51.1
DO50800
0 years, male, NA, stage:2, alive, 510 days
51.0
DO45191
0 years, female, NA, stage:2, alive, 1200 days
50.7
DO45173
0 years, male, NA, stage:3, alive, 1170 days
50.6
DO50832
0 years, male, NA, stage:3, alive, 90 days
50.4
DO23542
0 years, male, NA, stage:3, alive, 960 days
50.4
DO45109
0 years, male, NA, stage:2, alive, 1590 days
50.3
DO45223
0 years, male, NA, stage:4, alive, 1020 days
50.2
DO45189
0 years, female, NA, stage:2, alive, 1200 days
49.9
DO50855
0 years, male, NA, stage:2, alive, 570 days
49.6
DO48737
0 years, male, NA, stage:1, alive, 720 days
49.5
DO45229
0 years, male, NA, stage:1, alive, 990 days
49.4
DO45227
0 years, female, NA, stage:2, alive, 1020 days
49.4
DO48716
0 years, male, NA, stage:2, alive, 720 days
49.2
DO45203
0 years, female, NA, stage:2, alive, 1170 days
48.5
DO45137
0 years, male, NA, stage:1, alive, 1320 days
48.4
DO48704
0 years, female, NA, stage:3, alive, 750 days
48.3
DO45171
0 years, male, NA, stage:3, alive, 600 days
48.2
DO45251
0 years, female, NA, stage:2, alive, 900 days
47.8
DO23513
0 years, male, NA, stage:3, alive, 1200 days
47.8
DO45201
0 years, male, NA, stage:1, alive, 900 days
47.7
DO48733
0 years, male, NA, stage:2, alive, 600 days
47.6
DO48682
0 years, female, NA, stage:3, dead, 120 days
47.6
DO45149
0 years, female, NA, stage:2, alive, 1260 days
47.5
DO50850
0 years, male, NA, stage:3, alive, 720 days
47.0
DO45095
0 years, male, NA, stage:2, alive, 1620 days
46.7
DO23547
0 years, male, NA, stage:1, alive, 1020 days
46.6
DO48736
0 years, female, NA, stage:1, alive, 600 days
46.5
DO45281
0 years, male, NA, stage:4, alive, 750 days
46.5
DO48679
0 years, male, NA, stage:2, alive, 1200 days
46.3
DO45141
0 years, male, NA, stage:2, alive, 1320 days
46.1
DO45283
0 years, male, NA, stage:3, alive, 510 days
45.9
DO45113
0 years, male, NA, stage:3, alive, 1560 days
45.5
DO48712
0 years, male, NA, stage:2, alive, 810 days
45.5
DO50816
0 years, male, NA, stage:2, alive, 390 days
45.4
DO23532
0 years, female, NA, stage:1, alive, 960 days
45.3
DO45255
0 years, male, NA, stage:3, alive, 720 days
45.3
DO45175
0 years, male, NA, stage:2, alive, 1140 days
45.2
DO50818
0 years, male, NA, stage:2, alive, 510 days
45.1
DO45235
0 years, female, NA, stage:1, alive, 900 days
44.8
DO50787
0 years, male, NA, stage:3, alive, 480 days
44.8
DO23537
0 years, male, NA, stage:2, dead, 900 days
44.8
DO50820
0 years, female, NA, stage:3, alive, 510 days
44.7
DO23545
0 years, male, NA, stage:2, dead, 570 days
44.3
DO48725
0 years, male, NA, stage:1, alive, 780 days
44.1
DO50825
0 years, male, NA, stage:2, alive, 390 days
43.9
DO45097
0 years, male, NA, stage:3, alive, 1620 days
43.7
DO45197
0 years, male, NA, stage:2, alive, 1170 days
43.3
DO45157
0 years, male, NA, stage:2, alive, 1980 days
43.2
DO45125
0 years, male, NA, stage:3, alive, 1680 days
43.2
DO23529
0 years, male, NA, stage:4, alive, 930 days
43.1
DO45187
0 years, female, NA, stage:1, alive, 1260 days
43.0
DO45253
0 years, male, NA, stage:2, alive, 870 days
42.9
DO45163
0 years, male, NA, stage:2, alive, 960 days
42.8
DO23514
0 years, male, NA, stage:2, alive, 1290 days
42.5
DO45207
0 years, male, NA, stage:1, alive, 1050 days
42.1
DO45169
0 years, male, NA, stage:3, alive, 1350 days
42.1
DO45107
0 years, female, NA, stage:2, alive, 1710 days
41.8
DO50789
0 years, female, NA, stage:2, alive, 570 days
41.6
DO48720
0 years, female, NA, stage:2, alive, 570 days
41.6
DO48741
0 years, male, NA, stage:3, alive, 240 days
41.0
DO45231
0 years, male, NA, stage:2, alive, 930 days
40.8
DO48695
0 years, male, NA, stage:2, alive, 720 days
40.6
DO23516
0 years, male, NA, stage:3, dead, 20 days
40.6
DO45129
0 years, male, NA, stage:3, alive, 1470 days
40.4
DO45259
0 years, male, NA, stage:3, alive, 330 days
40.4
DO50813
0 years, male, NA, stage:2, alive, 420 days
40.4
DO45213
0 years, male, NA, stage:1, alive, 1200 days
39.8
DO48743
0 years, female, NA, stage:2, alive, 570 days
39.7
DO50811
0 years, male, NA, stage:1, alive, 450 days
39.7
DO50804
0 years, male, NA, stage:2, alive, 720 days
39.4
DO45121
0 years, male, NA, stage:3, alive, 1530 days
39.1
DO48677
0 years, male, NA, stage:3, alive, 1140 days
38.8
DO23533
0 years, male, NA, stage:2, alive, 900 days
38.8
DO23539
0 years, male, NA, stage:1, alive, 1110 days
38.8
DO23528
0 years, female, NA, stage:2, alive, 1020 days
38.6
DO23518
0 years, male, NA, stage:2, alive, 1320 days
38.5
DO45279
0 years, male, NA, stage:3, alive, 1290 days
38.1
DO45243
0 years, female, NA, stage:3, alive, 930 days
38.0
DO45177
0 years, female, NA, stage:3, alive, 1260 days
37.7
DO45245
0 years, female, NA, stage:2, dead, 240 days
37.3
DO50774
0 years, female, NA, stage:2, alive, 720 days
37.2
DO45123
0 years, female, NA, stage:2, dead, 570 days
36.5
DO227801
0 years, female, NA, stage:1, alive, 660 days
36.4
DO50798
0 years, male, NA, stage:3, dead, 30 days
35.6
DO23521
0 years, male, NA, stage:3, alive, 1110 days
35.3
DO23552
0 years, female, NA, stage:1, alive, 810 days
35.3
DO45199
0 years, female, NA, stage:2, alive, 1350 days
34.7
DO48732
0 years, male, NA, stage:3, alive, 630 days
34.6
DO48693
0 years, male, NA, stage:2, alive, 900 days
34.5
DO45233
0 years, male, NA, stage:3, alive, 900 days
34.3
DO23512
0 years, male, NA, stage:1, alive, 1260 days
33.4
DO45193
0 years, female, NA, stage:4, dead, 120 days
33.4
DO50817
0 years, male, NA, stage:2, alive, 390 days
33.2
DO45225
0 years, male, NA, stage:1, alive, 1050 days
33.2
DO45099
0 years, male, NA, stage:3, alive, 1590 days
33.1
DO23536
0 years, male, NA, stage:2, alive, 930 days
33.0
DO48727
0 years, female, NA, stage:2, dead, 390 days
32.9
DO23527
0 years, male, NA, stage:1, alive, 1050 days
32.9
DO48706
0 years, male, NA, stage:2, alive, 870 days
32.8
DO50803
0 years, female, NA, stage:1, alive, 540 days
32.6
DO45111
0 years, male, NA, stage:2, alive, 1590 days
32.3
DO45094
0 years, male, NA, stage:3, alive, 1650 days
32.3
DO48746
0 years, male, NA, stage:3, alive, 570 days
32.1
DO23534
0 years, male, NA, stage:2, alive, 840 days
31.8
DO45159
0 years, male, NA, stage:3, alive, 1470 days
31.6
DO45117
0 years, female, NA, stage:2, dead, 1110 days
31.5
DO48728
0 years, female, NA, stage:2, alive, 150 days
31.5
DO23549
0 years, male, NA, stage:3, alive, 990 days
31.4
DO45133
0 years, male, NA, stage:3, dead, 660 days
31.0
DO48761
0 years, male, NA, stage:2, alive, 870 days
31.0
DO50859
0 years, male, NA, stage:2, alive, 180 days
30.8
DO45261
0 years, male, NA, stage:3, alive, 990 days
30.6
DO48742
0 years, male, NA, stage:2, alive, 600 days
30.6
DO45115
0 years, male, NA, stage:2, alive, 840 days
29.8
DO45181
0 years, female, NA, stage:2, alive, 1200 days
29.7
DO45215
0 years, male, NA, stage:2, alive, 1170 days
28.8
DO48760
0 years, female, NA, stage:2, alive, 690 days
27.7
DO50807
0 years, male, NA, stage:1, alive, 540 days
27.7
DO45263
0 years, male, NA, stage:3, dead, 270 days
27.1
DO50815
0 years, male, NA, stage:3, alive, 150 days
27.1
DO48721
0 years, female, NA, stage:1, alive, 900 days
27.0
DO48674
0 years, male, NA, stage:2, alive, 1260 days
26.9
DO23550
0 years, male, NA, stage:1, alive, 990 days
26.9
DO45241
0 years, male, NA, stage:1, alive, 1080 days
26.7
DO45247
0 years, female, NA, stage:2, alive, 210 days
26.1
DO45096
0 years, male, NA, stage:2, dead, 1290 days
25.4
DO23548
0 years, female, NA, stage:1, alive, 840 days
25.2
DO23509
0 years, male, NA, stage:3, dead, 780 days
25.0
DO45091
0 years, male, NA, stage:2, dead, 1320 days
24.3
DO45167
0 years, male, NA, stage:2, dead, 1440 days
23.9
DO23531
0 years, female, NA, stage:3, alive, 900 days
23.8
DO23541
0 years, male, NA, stage:2, alive, 930 days
23.3
DO23538
0 years, male, NA, stage:2, alive, 450 days
23.3
DO50845
0 years, male, NA, stage:3, alive, 210 days
22.8
DO227643
0 years, male, NA, stage:2, alive, 1260 days
20.5
DO23546
0 years, male, NA, stage:2, alive, 1050 days
20.1
DO23543
0 years, male, NA, stage:2, alive, 1020 days
19.4
DO45237
0 years, male, NA, stage:2, alive, 900 days
19.4
DO45195
0 years, male, NA, stage:1, alive, 390 days
19.1
DO50857
0 years, male, NA, stage:2, alive, 210 days
19.0
DO23551
0 years, male, NA, stage:3, dead, 150 days
18.9
DO45105
0 years, male, NA, stage:1, alive, 1680 days
17.5
DO45101
0 years, male, NA, stage:2, alive, 1680 days
16.5
DO23544
0 years, male, NA, stage:2, alive, 960 days
14.0
DO23517
0 years, male, NA, stage:2, alive, 1200 days
12.5
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
421
Tumor
0.7
1025
Tumor
0.7
491
Tumor
0.5
473
Tumor
0.5
743
Tumor
0.5
471
Tumor
0.5
147
Tumor
0.5
745
Tumor
0.4
617
Tumor
0.4
363
Tumor
0.4
533
Tumor
0.4
851
Tumor
0.4
741
Tumor
0.4
557
Tumor
0.4
195
Tumor
0.4
474
Normal
0.3
685
Tumor
0.3
481
Tumor
0.3
573
Tumor
0.3
395
Tumor
0.3
283
Tumor
0.3
482
Normal
0.3
272
Normal
0.3
911
Tumor
0.3
227
Tumor
0.3
353
Tumor
0.3
477
Tumor
0.3
257
Tumor
0.3
472
Normal
0.3
686
Normal
0.3
354
Normal
0.3
124
Normal
0.3
715
Tumor
0.3
786
Normal
0.3
478
Normal
0.3
135
Tumor
0.3
222
Normal
0.3
978
Normal
0.3
271
Tumor
0.3
884
Normal
0.3
425
Tumor
0.3
874
Normal
0.3
563
Tumor
0.3
728
Normal
0.3
375
Tumor
0.2
364
Normal
0.2
343
Tumor
0.2
925
Tumor
0.2
697
Tumor
0.2
268
Normal
0.2
912
Normal
0.2
192
Normal
0.2
641
Tumor
0.2
258
Normal
0.2
361
Tumor
0.2
957
Tumor
0.2
462
Normal
0.2
756
Normal
0.2
328
Normal
0.2
498
Normal
0.2
387
Tumor
0.2
451
Tumor
0.2
221
Tumor
0.2
232
Normal
0.2
867
Tumor
0.2
1015
Tumor
0.2
716
Normal
0.2
1045
Tumor
0.2
267
Tumor
0.2
217
Tumor
0.2
914
Normal
0.2
564
Normal
0.2
1028
Normal
0.2
223
Tumor
0.2
616
Normal
0.2
814
Normal
0.2
126
Normal
0.2
924
Normal
0.2
125
Tumor
0.2
721
Tumor
0.2
1014
Normal
0.2
385
Tumor
0.2
913
Tumor
0.2
627
Tumor
0.2
1042
Normal
0.2
1027
Tumor
0.2
862
Normal
0.2
218
Normal
0.2
665
Tumor
0.2
362
Normal
0.2
558
Normal
0.2
461
Tumor
0.1
866
Normal
0.1
824
Normal
0.1
954
Normal
0.1
744
Normal
0.1
415
Tumor
0.1
262
Normal
0.1
214
Normal
0.1
882
Normal
0.1
618
Normal
0.1
1044
Normal
0.1
492
Normal
0.1
572
Normal
0.1
723
Tumor
0.1
286
Normal
0.1
696
Normal
0.1
858
Normal
0.1
742
Normal
0.1
984
Normal
0.1
396
Normal
0.1
918
Normal
0.1
284
Normal
0.1
111
Normal
0.1
536
Normal
0.1
191
Tumor
0.1
224
Normal
0.1
724
Normal
0.1
412
Normal
0.1
161
Tumor
0.1
926
Normal
0.1
1021
Tumor
0.1
413
Tumor
0.1
212
Normal
0.1
393
Tumor
0.1
313
Tumor
0.1
568
Normal
0.1
861
Tumor
0.1
952
Normal
0.1
921
Tumor
0.1
494
Normal
0.1
1046
Normal
0.1
518
Normal
0.1
355
Tumor
0.1
864
Normal
0.1
1022
Normal
0.1
368
Normal
0.1
1041
Tumor
0.1
483
Tumor
0.1
517
Tumor
0.1
661
Tumor
0.1
231
Tumor
0.1
392
Normal
0.1
528
Normal
0.1
1026
Normal
0.1
968
Normal
0.0
1032
Normal
0.0
863
Tumor
0.0
356
Normal
0.0
423
Tumor
0.0
211
Tumor
0.0
488
Normal
0.0
713
Tumor
0.0
916
Normal
0.0
922
Normal
0.0
327
Tumor
0.0
636
Normal
0.0
816
Normal
0.0
444
Normal
0.0
963
Tumor
0.0
131
Tumor
0.0
434
Normal
0.0
537
Tumor
0.0
352
Normal
0.0
868
Normal
0.0
737
Tumor
0.0
738
Normal
0.0
228
Normal
0.0
127
Tumor
0.0
484
Normal
0.0
664
Normal
0.0
546
Normal
0.0
818
Normal
0.0
196
Normal
0.0
615
Tumor
0.0
386
Normal
0.0
746
Normal
0.0
877
Tumor
0.0
261
Tumor
0.0
1016
Normal
0.0
955
Tumor
0.0
344
Normal
0.0
524
Normal
0.0
448
Normal
0.0
384
Normal
0.0
466
Normal
0.0
376
Normal
0.0
493
Tumor
0.0
145
Tumor
0.0
187
Tumor
0.0
966
Normal
0.0
671
Tumor
0.0
662
Normal
0.0
642
Normal
0.0
964
Normal
0.0
514
Normal
0.0
311
Tumor
0.0
422
Normal
0.0
416
Normal
0.0
534
Normal
0.0
447
Tumor
0.0
426
Normal
0.0
852
Normal
0.0
755
Tumor
0.0
535
Tumor
0.0
778
Normal
0.0
435
Tumor
0.0
628
Normal
-0.1
666
Normal
-0.1
358
Normal
-0.1
953
Tumor
-0.1
525
Tumor
-0.1
648
Normal
-0.1
365
Tumor
-0.1
1031
Tumor
-0.1
878
Normal
-0.1
467
Tumor
-0.1
571
Tumor
-0.1
976
Normal
-0.1
114
Normal
-0.1
813
Tumor
-0.1
923
Tumor
-0.1
943
Tumor
-0.1
366
Normal
-0.1
142
Normal
-0.1
513
Tumor
-0.1
431
Tumor
-0.1
727
Tumor
-0.1
777
Tumor
-0.1
456
Normal
-0.1
917
Tumor
-0.1
817
Tumor
-0.1
714
Normal
-0.1
443
Tumor
-0.1
213
Tumor
-0.1
944
Normal
-0.1
722
Normal
-0.1
432
Normal
-0.1
185
Tumor
-0.1
526
Normal
-0.1
136
Normal
-0.1
367
Tumor
-0.1
394
Normal
-0.1
956
Normal
-0.1
464
Normal
-0.1
672
Normal
-0.1
574
Normal
-0.1
967
Tumor
-0.1
391
Tumor
-0.1
823
Tumor
-0.1
937
Tumor
-0.1
958
Normal
-0.1
424
Normal
-0.1
468
Normal
-0.1
113
Tumor
-0.1
436
Normal
-0.1
188
Normal
-0.1
647
Tumor
-0.1
428
Normal
-0.2
427
Tumor
-0.2
865
Tumor
-0.2
342
Normal
-0.2
965
Tumor
-0.2
663
Tumor
-0.2
171
Tumor
-0.2
975
Tumor
-0.2
516
Normal
-0.2
297
Tumor
-0.2
951
Tumor
-0.2
162
Normal
-0.2
388
Normal
-0.2
883
Tumor
-0.2
982
Normal
-0.2
554
Normal
-0.2
312
Normal
-0.2
881
Tumor
-0.2
455
Tumor
-0.2
123
Tumor
-0.2
1043
Tumor
-0.2
487
Tumor
-0.2
141
Tumor
-0.2
567
Tumor
-0.2
915
Tumor
-0.2
128
Normal
-0.2
553
Tumor
-0.2
497
Tumor
-0.2
538
Normal
-0.2
698
Normal
-0.2
857
Tumor
-0.2
411
Tumor
-0.2
981
Tumor
-0.2
137
Tumor
-0.2
977
Tumor
-0.2
285
Tumor
-0.2
172
Normal
-0.2
938
Normal
-0.2
873
Tumor
-0.2
278
Normal
-0.2
132
Normal
-0.3
446
Normal
-0.3
433
Tumor
-0.3
414
Normal
-0.3
523
Tumor
-0.3
452
Normal
-0.3
545
Tumor
-0.3
341
Tumor
-0.3
515
Tumor
-0.3
138
Normal
-0.3
1013
Tumor
-0.3
146
Normal
-0.3
148
Normal
-0.3
695
Tumor
-0.4
357
Tumor
-0.4
298
Normal
-0.4
463
Tumor
-0.4
351
Tumor
-0.4
383
Tumor
-0.4
331
Tumor
-0.4
277
Tumor
-0.4
785
Tumor
-0.4
186
Normal
-0.5
815
Tumor
-0.5
112
Tumor
-0.5
983
Tumor
-0.5
314
Normal
-0.5
527
Tumor
-0.6
465
Tumor
-0.6
635
Tumor
-0.6
332
Normal
-0.7
445
Tumor
-1.2
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
