We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
24.0
nTPM
HPA Brain:
88.5
nTPM
GTEx:
24.0
nTPM
FANTOM5:
0.7
Scaled Tags Per Million
Pig:
47.0
nTPM
Mouse:
20.2
nTPM
Allen mouse:
1.5
Expression energy
MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
88.5
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 17.9
2219
Male, age 76, both hemispheres
50.1
2666
Male, age 74, left hemisphere
37.5
2586
Male, age 75, left hemisphere
25.5
1827
Male, age 72, unknown
14.3
1833
Male, age 53, unknown
11.3
2828
Female, age 72, unknown
11.0
1830
Male, age 51, unknown
9.2
2411
Female, age 72, unknown
7.2
2019
Male, age 18, unknown
6.5
1870
Female, age 42, unknown
6.0
Dorsal raphe nucleus nTPM: 5.8
2298
Female, age 72, unknown
6.8
2016
Female, age 72, unknown
6.4
2750
Male, age 76, both hemispheres
5.8
2047
Male, age 72, unknown
5.3
1828
Male, age 53, unknown
4.9
Inferior colliculus nTPM: 19.6
2097
Female, age 72, unknown
37.7
1890
Male, age 53, unknown
29.2
1848
Female, age 42, unknown
6.1
2849
Male, age 72, unknown
5.6
Median raphe nucleus nTPM: 14.5
2220
Male, age 76, midline
14.5
Periaquaductal grey, anterior nTPM: 23.5
1947
Male, age 18, unknown
35.6
1795
Male, age 51, unknown
26.0
2502
Female, age 75, unknown
8.8
Periaquaductal grey, dorsal nTPM: 6.2
1840
Male, age 53, unknown
8.0
1831
Male, age 72, unknown
7.6
2464
Female, age 72, unknown
5.6
2850
Male, age 76, both hemispheres
3.6
Periaquaductal grey, lateral nTPM: 6.4
2053
Male, age 18, unknown
8.5
2140
Male, age 76, both hemispheres
5.5
2272
Male, age 74, both hemispheres
5.1
Pretectal area nTPM: 14.3
2007
Male, age 72, unknown
27.1
1944
Female, age 72, unknown
25.8
2667
Female, age 75, unknown
20.1
1815
Male, age 53, unknown
15.8
1816
Male, age 51, unknown
15.2
2224
Female, age 72, unknown
14.3
1817
Female, age 42, unknown
14.1
2825
Male, age 18, unknown
11.3
2407
Male, age 75, both hemispheres
5.5
2273
Male, age 74, both hemispheres
4.9
2316
Male, age 76, right hemisphere
2.8
Red nucleus nTPM: 14.0
1954
Female, age 42, unknown
19.5
1904
Male, age 53, unknown
18.8
2584
Male, age 75, left hemisphere
18.2
1821
Female, age 72, unknown
15.6
2769
Male, age 72, unknown
14.4
2227
Male, age 72, unknown
13.7
2823
Male, age 76, right hemisphere
13.7
2503
Female, age 72, unknown
12.6
1865
Male, age 51, unknown
12.4
2588
Male, age 74, left hemisphere
11.6
2725
Female, age 75, unknown
9.8
2785
Male, age 18, unknown
7.6
Substantia nigra nTPM: 88.5
1916
Female, age 42, unknown
185.3
2665
Male, age 74, both hemispheres
175.6
2241
Male, age 72, unknown
116.8
1851
Male, age 51, unknown
114.6
2409
Female, age 72, unknown
92.2
2699
Male, age 18, unknown
71.1
1941
Male, age 53, unknown
44.8
2583
Male, age 75, right hemisphere
36.9
1889
Female, age 72, unknown
28.1
2590
Female, age 75, unknown
19.8
Superior colliculus nTPM: 14.5
2668
Female, age 75, unknown
65.6
2087
Female, age 72, unknown
18.1
2261
Male, age 18, unknown
15.6
1796
Male, age 53, unknown
12.6
2664
Male, age 75, both hemispheres
8.2
1895
Male, age 76, right hemisphere
5.9
1913
Female, age 42, unknown
5.8
1839
Male, age 51, unknown
4.9
1995
Male, age 72, unknown
4.6
2587
Male, age 74, left hemisphere
4.2
Ventral tegmental area nTPM: 61.2
2410
Female, age 72, unknown
101.4
1915
Female, age 42, unknown
96.1
2218
Male, age 76, both hemispheres
90.1
1942
Male, age 51, unknown
51.7
2021
Male, age 53, unknown
16.9
2223
Female, age 72, unknown
11.0
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
24.0
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 24.0
Samples: 139
Max nTPM: 107.6
Min nTPM: 0.3
Std nTPM: 25.0
Median nTPM: 15.0
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
107.6
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
97.8
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
93.8
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
89.7
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
80.4
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
79.7
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
79.3
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
73.6
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
73.3
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
70.7
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
69.6
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
69.1
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
66.4
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
65.2
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
64.9
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
63.3
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
62.9
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
62.0
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
59.0
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
57.2
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
54.0
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
49.9
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
47.2
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
47.2
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
46.1
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
44.3
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
44.2
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
42.8
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
41.8
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
41.6
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
40.2
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
40.0
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
39.5
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
38.9
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
38.6
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
36.9
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
35.9
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
35.6
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
33.0
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
32.8
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
32.4
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
28.9
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
28.7
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
28.1
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
28.0
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
27.5
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
27.3
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
25.9
GTEX-T5JC-0011-R2A-SM-32PLZ
20-29 years, male
25.1
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
24.1
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
24.1
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
22.5
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
22.5
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
22.3
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
22.0
GTEX-18464-0011-R2a-SM-731AL
50-59 years, male
22.0
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
21.8
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
21.5
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
20.8
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
20.5
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
19.9
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
19.5
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
19.3
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
18.5
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
18.2
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
18.1
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
17.6
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
17.5
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
17.1
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
15.0
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
13.9
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
13.5
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
13.1
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
12.0
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
11.1
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
10.9
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
10.4
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
10.3
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
10.2
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
10.0
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
9.8
GTEX-NL4W-0011-R2a-SM-2I5GV
50-59 years, male
9.5
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
9.4
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
9.3
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
9.3
GTEX-P44G-0011-R2A-SM-2XCD2
30-39 years, male
8.6
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
8.3
GTEX-PWO3-0011-R2A-SM-2S1OX
60-69 years, female
7.7
GTEX-1IKOH-0011-R2a-SM-CMKHO
60-69 years, female
7.7
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
7.5
GTEX-NPJ8-0011-R2a-SM-2TC6M
40-49 years, male
7.2
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
7.1
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
7.0
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
6.9
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
6.5
GTEX-N7MS-0011-R2a-SM-2HML6
60-69 years, male
6.4
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
6.1
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
5.9
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
5.8
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
5.5
GTEX-OXRO-0011-R2A-SM-3NB1W
60-69 years, female
5.3
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
5.1
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
5.1
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
4.0
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
3.8
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
3.8
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
3.5
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
3.1
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
3.0
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
2.9
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
2.9
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
2.8
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
2.6
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
2.6
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
2.6
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
2.5
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
2.4
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
2.3
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
2.0
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
2.0
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
1.4
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
1.3
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
1.2
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
1.1
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
1.1
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
1.1
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
1.0
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
1.0
GTEX-N7MT-0011-R2a-SM-2I3GI
60-69 years, female
0.9
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
0.9
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
0.9
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
0.8
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
0.6
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
0.5
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
0.5
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
0.5
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
0.4
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
0.3
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
0.3
Show allShow less
MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
20.2
Mouse sample
Sample description
nTPM
Midbrain nTPM: 20.3
Samples: 4
Max nTPM: 23.5
Min nTPM: 17.7
Sample A
Male
17.7
Sample B
Male
19.4
Sample C
Female
23.5
Sample D
Female
20.4
MIDBRAIN - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.