MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:24.0 nTPM
HPA Brain:88.5 nTPM
GTEx:24.0 nTPM
FANTOM5:0.7 Scaled Tags Per Million
Pig:47.0 nTPM
Mouse:20.2 nTPM
Allen mouse:1.5 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 88.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 17.9
2219 Male, age 76, both hemispheres 50.1
2666 Male, age 74, left hemisphere 37.5
2586 Male, age 75, left hemisphere 25.5
1827 Male, age 72, unknown 14.3
1833 Male, age 53, unknown 11.3
2828 Female, age 72, unknown 11.0
1830 Male, age 51, unknown 9.2
2411 Female, age 72, unknown 7.2
2019 Male, age 18, unknown 6.5
1870 Female, age 42, unknown 6.0
Dorsal raphe nucleus
nTPM: 5.8
2298 Female, age 72, unknown 6.8
2016 Female, age 72, unknown 6.4
2750 Male, age 76, both hemispheres 5.8
2047 Male, age 72, unknown 5.3
1828 Male, age 53, unknown 4.9
Inferior colliculus
nTPM: 19.6
2097 Female, age 72, unknown 37.7
1890 Male, age 53, unknown 29.2
1848 Female, age 42, unknown 6.1
2849 Male, age 72, unknown 5.6
Median raphe nucleus
nTPM: 14.5
2220 Male, age 76, midline 14.5
Periaquaductal grey, anterior
nTPM: 23.5
1947 Male, age 18, unknown 35.6
1795 Male, age 51, unknown 26.0
2502 Female, age 75, unknown 8.8
Periaquaductal grey, dorsal
nTPM: 6.2
1840 Male, age 53, unknown 8.0
1831 Male, age 72, unknown 7.6
2464 Female, age 72, unknown 5.6
2850 Male, age 76, both hemispheres 3.6
Periaquaductal grey, lateral
nTPM: 6.4
2053 Male, age 18, unknown 8.5
2140 Male, age 76, both hemispheres 5.5
2272 Male, age 74, both hemispheres 5.1
Pretectal area
nTPM: 14.3
2007 Male, age 72, unknown 27.1
1944 Female, age 72, unknown 25.8
2667 Female, age 75, unknown 20.1
1815 Male, age 53, unknown 15.8
1816 Male, age 51, unknown 15.2
2224 Female, age 72, unknown 14.3
1817 Female, age 42, unknown 14.1
2825 Male, age 18, unknown 11.3
2407 Male, age 75, both hemispheres 5.5
2273 Male, age 74, both hemispheres 4.9
2316 Male, age 76, right hemisphere 2.8
Red nucleus
nTPM: 14.0
1954 Female, age 42, unknown 19.5
1904 Male, age 53, unknown 18.8
2584 Male, age 75, left hemisphere 18.2
1821 Female, age 72, unknown 15.6
2769 Male, age 72, unknown 14.4
2227 Male, age 72, unknown 13.7
2823 Male, age 76, right hemisphere 13.7
2503 Female, age 72, unknown 12.6
1865 Male, age 51, unknown 12.4
2588 Male, age 74, left hemisphere 11.6
2725 Female, age 75, unknown 9.8
2785 Male, age 18, unknown 7.6
Substantia nigra
nTPM: 88.5
1916 Female, age 42, unknown 185.3
2665 Male, age 74, both hemispheres 175.6
2241 Male, age 72, unknown 116.8
1851 Male, age 51, unknown 114.6
2409 Female, age 72, unknown 92.2
2699 Male, age 18, unknown 71.1
1941 Male, age 53, unknown 44.8
2583 Male, age 75, right hemisphere 36.9
1889 Female, age 72, unknown 28.1
2590 Female, age 75, unknown 19.8
Superior colliculus
nTPM: 14.5
2668 Female, age 75, unknown 65.6
2087 Female, age 72, unknown 18.1
2261 Male, age 18, unknown 15.6
1796 Male, age 53, unknown 12.6
2664 Male, age 75, both hemispheres 8.2
1895 Male, age 76, right hemisphere 5.9
1913 Female, age 42, unknown 5.8
1839 Male, age 51, unknown 4.9
1995 Male, age 72, unknown 4.6
2587 Male, age 74, left hemisphere 4.2
Ventral tegmental area
nTPM: 61.2
2410 Female, age 72, unknown 101.4
1915 Female, age 42, unknown 96.1
2218 Male, age 76, both hemispheres 90.1
1942 Male, age 51, unknown 51.7
2021 Male, age 53, unknown 16.9
2223 Female, age 72, unknown 11.0

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 24.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 24.0
Samples: 139

Max nTPM: 107.6
Min nTPM: 0.3
Std nTPM: 25.0
Median nTPM: 15.0
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 107.6
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 97.8
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 93.8
GTEX-15CHQ-0011-R2b-SM-6AJAD 60-69 years, male 89.7
GTEX-15DYW-0011-R2b-SM-7KUKY 60-69 years, female 80.4
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 79.7
GTEX-14BIN-0011-R2a-SM-5S2RJ 50-59 years, female 79.3
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 73.6
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 73.3
GTEX-1EKGG-0011-R2a-SM-CE6R8 60-69 years, male 70.7
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 69.6
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 0.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 0.7
FF:10158-103A5 76 years, female 0.7

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 47.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 47.0
Samples: 4

Max nTPM: 98.3
Min nTPM: 1.9
Sample A Female 56.7
Sample B Female 31.1
Sample C Male 98.3
Sample D Male 1.9
Midbrain
nTPM: 10.3
Samples: 4

Max nTPM: 15.9
Min nTPM: 4.4
Sample A Female 12.5
Sample B Female 15.9
Sample C Male 4.4
Sample D Male 8.2
Periaqueductal gray
nTPM: 9.1
Samples: 3

Max nTPM: 13.7
Min nTPM: 4.6
Sample B Female 4.6
Sample C Male 13.7
Sample D Male 9.1
Superior colliculi
nTPM: 6.5
Samples: 4

Max nTPM: 11.4
Min nTPM: 1.5
Sample A Female 10.0
Sample B Female 11.4
Sample C Male 1.5
Sample D Male 3.1

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 20.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 20.3
Samples: 4

Max nTPM: 23.5
Min nTPM: 17.7
Sample A Male 17.7
Sample B Male 19.4
Sample C Female 23.5
Sample D Female 20.4

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 1.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.5
357 Antisense, RP_Baylor_102735, Mouse strain C57BL/6J (56 days, male) 1.5
81790728 Antisense, RP_090820_05_A10, Mouse strain C57BL/6J (56 days, male) 1.5
358 Antisense, RP_Baylor_102735, Mouse strain C57BL/6J (56 days, male) 0.8

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