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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PAK1 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
10.5
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
39.4
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
34.3
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
34.1
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
33.9
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
31.6
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
30.4
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
30.0
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
29.2
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
28.8
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
28.5
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
28.1
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
28.1
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
27.1
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
26.1
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
25.6
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
25.4
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
24.5
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
24.1
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
23.7
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
23.7
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
23.5
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
23.4
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
23.4
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
23.4
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
23.2
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
23.0
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
23.0
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
22.5
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
22.4
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
22.3
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
22.0
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
21.8
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
21.5
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
21.3
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
21.2
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
21.0
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
20.1
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
20.0
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
19.9
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
19.8
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
19.5
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
19.3
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
19.3
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
19.2
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
18.6
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
18.4
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
18.0
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
17.9
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
17.8
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
17.7
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
17.6
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
17.2
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
17.2
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
17.2
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
17.2
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
17.1
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
17.1
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
17.1
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
17.0
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
17.0
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
16.9
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
16.8
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
16.6
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
16.3
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
16.3
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
16.2
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
16.1
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
15.9
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
15.8
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
15.7
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
15.6
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
15.6
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
15.5
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
15.5
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
15.4
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
15.3
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
15.2
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
15.2
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
15.1
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
15.1
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
15.0
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
14.9
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
14.8
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
14.7
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
14.7
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
14.6
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
14.5
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
14.4
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
14.4
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
14.3
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
14.2
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
14.2
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
14.2
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
14.1
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
14.0
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
13.8
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
13.7
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
13.6
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
13.6
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
13.5
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
13.3
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
13.3
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
13.2
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
13.2
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
13.1
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
13.0
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
12.9
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
12.9
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
12.8
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
12.8
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
12.7
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
12.6
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
12.4
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
12.4
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
12.3
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
12.3
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
12.3
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
12.2
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
12.2
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
12.1
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
12.1
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
12.0
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
12.0
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
11.8
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
11.7
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
11.7
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
11.7
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
11.5
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
11.4
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
11.4
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
11.4
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
11.3
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
11.3
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
11.2
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
11.2
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
11.2
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
11.1
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
11.1
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
10.9
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
10.8
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
10.8
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
10.7
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
10.7
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
10.7
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
10.6
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
10.6
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
10.6
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
10.5
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
10.5
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
10.5
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
10.5
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
10.4
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
10.3
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
10.3
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
10.3
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
10.3
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
10.3
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
10.2
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
10.2
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
10.1
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
10.1
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
9.9
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
9.8
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
9.8
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
9.8
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
9.7
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
9.7
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
9.7
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
9.7
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
9.6
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
9.6
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
9.6
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
9.6
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
9.5
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
9.4
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
9.4
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
9.3
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
9.3
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
9.2
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
9.2
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
9.1
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
9.1
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
9.1
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
9.0
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
8.8
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
8.8
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
8.8
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
8.8
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
8.8
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
8.8
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
8.8
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
8.7
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
8.7
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
8.7
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
8.6
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
8.6
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
8.6
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
8.6
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
8.5
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
8.4
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
8.4
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
8.3
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
8.3
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
8.3
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
8.3
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
8.2
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
8.2
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
8.0
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
8.0
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
7.9
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
7.9
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
7.9
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
7.8
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
7.8
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
7.7
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
7.7
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
7.7
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
7.7
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
7.6
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
7.6
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
7.5
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
7.5
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
7.5
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
7.4
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
7.3
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
7.3
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
7.2
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
7.2
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
7.2
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
7.1
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
7.0
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
6.9
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
6.9
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
6.9
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
6.8
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
6.8
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
6.8
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
6.8
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
6.8
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
6.7
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
6.7
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
6.7
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
6.7
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
6.6
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
6.6
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
6.5
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
6.5
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
6.4
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
6.4
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
6.3
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
6.3
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
6.2
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
6.2
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
6.2
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
6.1
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
6.0
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
6.0
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
6.0
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
6.0
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
5.9
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
5.9
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
5.9
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
5.8
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
5.7
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
5.7
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
5.6
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
5.6
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
5.6
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
5.5
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
5.5
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
5.5
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
5.4
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
5.4
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
5.3
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
5.3
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
5.3
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
5.2
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
5.1
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
5.0
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
4.9
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
4.9
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
4.9
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
4.8
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
4.8
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
4.8
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
4.7
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
4.7
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
4.7
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
4.6
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
4.6
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
4.5
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
4.5
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
4.5
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
4.5
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
4.5
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
4.4
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
4.4
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
4.4
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
4.4
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
4.3
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
4.3
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
4.2
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
4.2
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
4.2
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
4.1
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
4.1
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
4.1
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
4.1
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
4.0
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
3.9
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
3.9
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
3.9
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
3.9
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
3.8
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
3.8
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
3.8
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
3.6
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
3.5
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
3.4
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
3.4
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
3.3
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
3.2
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
3.2
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
3.2
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
3.0
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
3.0
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
2.9
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
2.9
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
2.9
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
2.8
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
2.8
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
2.8
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
2.7
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
2.7
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
2.7
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
2.7
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
2.6
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
2.6
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
2.5
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
2.5
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
2.5
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
2.4
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
2.4
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
2.3
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
2.2
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
2.2
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
2.2
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
2.0
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
1.9
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
1.8
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
1.8
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
1.6
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
1.6
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
1.5
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
1.4
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
1.4
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
1.4
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
1.3
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
1.3
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
1.3
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
0.9
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PAK1 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
12.6
Number of samples
231
Samples
Sample
Description
TPM
DO45189
0 years, female, NA, stage:2, alive, 1200 days
56.9
DO45299
0 years, female, NA, stage:1, alive, 1440 days
33.8
DO45219
0 years, male, NA, stage:2, alive, 1080 days
31.1
DO45287
0 years, male, NA, stage:1, alive, 390 days
29.4
DO45307
0 years, female, NA, stage:4, dead, 240 days
28.3
DO45205
0 years, female, NA, stage:2, dead, 90 days
28.2
DO23515
0 years, male, NA, stage:2, alive, 1230 days
27.6
DO23523
0 years, male, NA, stage:3, alive, 1080 days
27.1
DO45297
0 years, female, NA, stage:4, dead, 1260 days
26.0
DO45279
0 years, male, NA, stage:3, alive, 1290 days
25.9
DO50815
0 years, male, NA, stage:3, alive, 150 days
25.4
DO45245
0 years, female, NA, stage:2, dead, 240 days
23.9
DO45137
0 years, male, NA, stage:1, alive, 1320 days
23.6
DO45275
0 years, male, NA, stage:3, dead, 10 days
23.6
DO48697
0 years, female, NA, stage:2, dead, 810 days
23.4
DO45211
0 years, male, NA, stage:3, alive, 240 days
23.3
DO23526
0 years, male, NA, stage:3, alive, 1050 days
22.4
DO23540
0 years, male, NA, stage:1, alive, 750 days
22.4
DO48736
0 years, female, NA, stage:1, alive, 600 days
22.0
DO45221
0 years, female, NA, stage:4, dead, 390 days
21.7
DO45239
0 years, male, NA, stage:2, alive, 870 days
21.7
DO23510
0 years, female, NA, stage:2, alive, 870 days
21.2
DO50808
0 years, male, NA, stage:2, alive, 570 days
21.2
DO48751
0 years, male, NA, stage:2, dead, 480 days
21.1
DO50829
0 years, male, NA, stage:3, alive, 570 days
20.9
DO45283
0 years, male, NA, stage:3, alive, 510 days
20.4
DO45191
0 years, female, NA, stage:2, alive, 1200 days
20.3
DO45243
0 years, female, NA, stage:3, alive, 930 days
20.2
DO45301
0 years, male, NA, stage:2, dead, 1440 days
20.1
DO45207
0 years, male, NA, stage:1, alive, 1050 days
19.9
DO48732
0 years, male, NA, stage:3, alive, 630 days
19.8
DO45277
0 years, male, NA, stage:3, alive, 600 days
19.8
DO45119
0 years, male, NA, stage:3, dead, 510 days
19.5
DO23535
0 years, male, NA, stage:1, alive, 960 days
18.8
DO45223
0 years, male, NA, stage:4, alive, 1020 days
18.5
DO45273
0 years, male, NA, stage:2, alive, 480 days
18.5
DO45285
0 years, male, NA, stage:3, alive, 480 days
18.0
DO23552
0 years, female, NA, stage:1, alive, 810 days
17.9
DO48717
0 years, male, NA, stage:4, dead, 180 days
17.8
DO45159
0 years, male, NA, stage:3, alive, 1470 days
17.7
DO50806
0 years, male, NA, stage:4, alive, 540 days
17.6
DO48682
0 years, female, NA, stage:3, dead, 120 days
17.5
DO45173
0 years, male, NA, stage:3, alive, 1170 days
17.4
DO45185
0 years, male, NA, stage:2, alive, 600 days
17.3
DO45139
0 years, male, NA, stage:3, alive, 1320 days
17.3
DO23519
0 years, male, NA, stage:3, alive, 630 days
17.2
DO48720
0 years, female, NA, stage:2, alive, 570 days
16.8
DO45265
0 years, male, NA, stage:3, alive, 1020 days
16.8
DO45251
0 years, female, NA, stage:2, alive, 900 days
16.7
DO45157
0 years, male, NA, stage:2, alive, 1980 days
16.7
DO45135
0 years, male, NA, stage:1, alive, 1410 days
16.5
DO45165
0 years, male, NA, stage:2, alive, 690 days
16.5
DO48730
0 years, female, NA, stage:2, alive, 630 days
16.4
DO48727
0 years, female, NA, stage:2, dead, 390 days
16.2
DO23516
0 years, male, NA, stage:3, dead, 20 days
16.1
DO45131
0 years, male, NA, stage:4, dead, 360 days
15.9
DO45225
0 years, male, NA, stage:1, alive, 1050 days
15.9
DO45127
0 years, male, NA, stage:3, dead, 420 days
15.8
DO23533
0 years, male, NA, stage:2, alive, 900 days
15.6
DO48728
0 years, female, NA, stage:2, alive, 150 days
15.5
DO45155
0 years, male, NA, stage:2, alive, 2160 days
15.5
DO23542
0 years, male, NA, stage:3, alive, 960 days
15.4
DO45163
0 years, male, NA, stage:2, alive, 960 days
15.4
DO50778
0 years, male, NA, stage:4, alive, 630 days
15.4
DO50850
0 years, male, NA, stage:3, alive, 720 days
15.3
DO45113
0 years, male, NA, stage:3, alive, 1560 days
15.2
DO23546
0 years, male, NA, stage:2, alive, 1050 days
15.1
DO45269
0 years, male, NA, stage:3, alive, 750 days
14.8
DO23545
0 years, male, NA, stage:2, dead, 570 days
14.8
DO45121
0 years, male, NA, stage:3, alive, 1530 days
14.7
DO23513
0 years, male, NA, stage:3, alive, 1200 days
14.7
DO48704
0 years, female, NA, stage:3, alive, 750 days
14.6
DO48733
0 years, male, NA, stage:2, alive, 600 days
14.5
DO45145
0 years, male, NA, stage:3, dead, 60 days
14.5
DO45092
0 years, male, NA, stage:4, dead, 1200 days
14.4
DO45249
0 years, male, NA, stage:1, alive, 630 days
14.4
DO23547
0 years, male, NA, stage:1, alive, 1020 days
14.4
DO45253
0 years, male, NA, stage:2, alive, 870 days
14.3
DO45201
0 years, male, NA, stage:1, alive, 900 days
14.3
DO23524
0 years, female, NA, stage:2, alive, 1050 days
14.3
DO48700
0 years, female, NA, stage:2, alive, 810 days
14.3
DO45217
0 years, female, NA, stage:3, dead, 270 days
14.2
DO45197
0 years, male, NA, stage:2, alive, 1170 days
14.1
DO45097
0 years, male, NA, stage:3, alive, 1620 days
14.1
DO45263
0 years, male, NA, stage:3, dead, 270 days
14.0
DO45091
0 years, male, NA, stage:2, dead, 1320 days
13.9
DO50805
0 years, male, NA, stage:2, alive, 690 days
13.8
DO48757
0 years, female, NA, stage:3, alive, 480 days
13.5
DO48746
0 years, male, NA, stage:3, alive, 570 days
13.4
DO45105
0 years, male, NA, stage:1, alive, 1680 days
13.4
DO45141
0 years, male, NA, stage:2, alive, 1320 days
13.4
DO50799
0 years, female, NA, stage:2, alive, 540 days
13.3
DO23543
0 years, male, NA, stage:2, alive, 1020 days
13.2
DO45143
0 years, male, NA, stage:3, alive, 1290 days
13.1
DO50787
0 years, male, NA, stage:3, alive, 480 days
12.9
DO48761
0 years, male, NA, stage:2, alive, 870 days
12.8
DO48743
0 years, female, NA, stage:2, alive, 570 days
12.8
DO45231
0 years, male, NA, stage:2, alive, 930 days
12.7
DO50859
0 years, male, NA, stage:2, alive, 180 days
12.6
DO45267
0 years, male, NA, stage:3, dead, 570 days
12.6
DO48737
0 years, male, NA, stage:1, alive, 720 days
12.3
DO45213
0 years, male, NA, stage:1, alive, 1200 days
12.2
DO48723
0 years, male, NA, stage:1, alive, 600 days
12.2
DO50855
0 years, male, NA, stage:2, alive, 570 days
12.1
DO23512
0 years, male, NA, stage:1, alive, 1260 days
12.0
DO45289
0 years, female, NA, stage:3, alive, 360 days
12.0
DO45235
0 years, female, NA, stage:1, alive, 900 days
12.0
DO23528
0 years, female, NA, stage:2, alive, 1020 days
11.9
DO45257
0 years, male, NA, stage:3, alive, 810 days
11.9
DO50845
0 years, male, NA, stage:3, alive, 210 days
11.8
DO50817
0 years, male, NA, stage:2, alive, 390 days
11.8
DO48712
0 years, male, NA, stage:2, alive, 810 days
11.6
DO45261
0 years, male, NA, stage:3, alive, 990 days
11.6
DO45305
0 years, male, NA, stage:4, alive, 300 days
11.5
DO50819
0 years, female, NA, stage:2, alive, 510 days
11.5
DO50807
0 years, male, NA, stage:1, alive, 540 days
11.4
DO23536
0 years, male, NA, stage:2, alive, 930 days
11.2
DO45303
0 years, female, NA, stage:3, alive, 990 days
11.2
DO45115
0 years, male, NA, stage:2, alive, 840 days
11.0
DO45233
0 years, male, NA, stage:3, alive, 900 days
11.0
DO50832
0 years, male, NA, stage:3, alive, 90 days
11.0
DO50813
0 years, male, NA, stage:2, alive, 420 days
11.0
DO45229
0 years, male, NA, stage:1, alive, 990 days
11.0
DO48747
0 years, male, NA, stage:3, alive, 540 days
10.9
DO45199
0 years, female, NA, stage:2, alive, 1350 days
10.9
DO45096
0 years, male, NA, stage:2, dead, 1290 days
10.8
DO45183
0 years, female, NA, stage:2, dead, 570 days
10.8
DO50783
0 years, male, NA, stage:3, alive, 480 days
10.8
DO48695
0 years, male, NA, stage:2, alive, 720 days
10.7
DO45095
0 years, male, NA, stage:2, alive, 1620 days
10.6
DO48715
0 years, female, NA, stage:2, dead, 690 days
10.6
DO45169
0 years, male, NA, stage:3, alive, 1350 days
10.6
DO45203
0 years, female, NA, stage:2, alive, 1170 days
10.5
DO50776
0 years, male, NA, stage:1, alive, 690 days
10.4
DO23521
0 years, male, NA, stage:3, alive, 1110 days
10.4
DO50820
0 years, female, NA, stage:3, alive, 510 days
10.4
DO48716
0 years, male, NA, stage:2, alive, 720 days
10.3
DO50793
0 years, male, NA, stage:4, alive, 540 days
10.2
DO23525
0 years, male, NA, stage:4, alive, 1050 days
10.2
DO50785
0 years, male, NA, stage:4, dead, 90 days
10.2
DO45179
0 years, female, NA, stage:2, alive, 600 days
10.1
DO50809
0 years, male, NA, stage:3, dead, 720 days
10.1
DO50811
0 years, male, NA, stage:1, alive, 450 days
10.0
DO45103
0 years, male, NA, stage:3, alive, 450 days
9.9
DO50840
0 years, male, NA, stage:2, alive, 330 days
9.9
DO227801
0 years, female, NA, stage:1, alive, 660 days
9.9
DO50839
0 years, female, NA, stage:3, alive, 330 days
9.9
DO48677
0 years, male, NA, stage:3, alive, 1140 days
9.8
DO50802
0 years, male, NA, stage:2, alive, 930 days
9.6
DO45171
0 years, male, NA, stage:3, alive, 600 days
9.5
DO45187
0 years, female, NA, stage:1, alive, 1260 days
9.5
DO48725
0 years, male, NA, stage:1, alive, 780 days
9.5
DO45227
0 years, female, NA, stage:2, alive, 1020 days
9.5
DO48759
0 years, male, NA, stage:3, alive, 720 days
9.4
DO45153
0 years, female, NA, stage:2, alive, 1380 days
9.4
DO23541
0 years, male, NA, stage:2, alive, 930 days
9.4
DO48681
0 years, male, NA, stage:2, alive, 900 days
9.4
DO23508
0 years, female, NA, stage:2, alive, 390 days
9.3
DO45093
0 years, male, NA, stage:2, dead, 720 days
9.3
DO23530
0 years, male, NA, stage:4, dead, 180 days
9.3
DO50800
0 years, male, NA, stage:2, alive, 510 days
9.3
DO45107
0 years, female, NA, stage:2, alive, 1710 days
9.2
DO23548
0 years, female, NA, stage:1, alive, 840 days
9.2
DO45133
0 years, male, NA, stage:3, dead, 660 days
9.2
DO23527
0 years, male, NA, stage:1, alive, 1050 days
9.1
DO23534
0 years, male, NA, stage:2, alive, 840 days
8.9
DO45099
0 years, male, NA, stage:3, alive, 1590 days
8.9
DO50825
0 years, male, NA, stage:2, alive, 390 days
8.8
DO50816
0 years, male, NA, stage:2, alive, 390 days
8.7
DO48672
0 years, male, NA, stage:2, alive, 450 days
8.7
DO50789
0 years, female, NA, stage:2, alive, 570 days
8.7
DO45161
0 years, male, NA, stage:2, dead, 540 days
8.5
DO23531
0 years, female, NA, stage:3, alive, 900 days
8.4
DO45125
0 years, male, NA, stage:3, alive, 1680 days
8.4
DO45101
0 years, male, NA, stage:2, alive, 1680 days
8.3
DO23550
0 years, male, NA, stage:1, alive, 990 days
8.3
DO23549
0 years, male, NA, stage:3, alive, 990 days
8.1
DO45149
0 years, female, NA, stage:2, alive, 1260 days
8.1
DO23514
0 years, male, NA, stage:2, alive, 1290 days
8.1
DO45193
0 years, female, NA, stage:4, dead, 120 days
8.0
DO45181
0 years, female, NA, stage:2, alive, 1200 days
8.0
DO45123
0 years, female, NA, stage:2, dead, 570 days
8.0
DO48679
0 years, male, NA, stage:2, alive, 1200 days
8.0
DO45094
0 years, male, NA, stage:3, alive, 1650 days
7.9
DO48721
0 years, female, NA, stage:1, alive, 900 days
7.9
DO45177
0 years, female, NA, stage:3, alive, 1260 days
7.8
DO50818
0 years, male, NA, stage:2, alive, 510 days
7.8
DO23537
0 years, male, NA, stage:2, dead, 900 days
7.6
DO50804
0 years, male, NA, stage:2, alive, 720 days
7.5
DO50814
0 years, male, NA, stage:3, alive, 420 days
7.3
DO50844
0 years, male, NA, stage:4, alive, 300 days
7.0
DO50774
0 years, female, NA, stage:2, alive, 720 days
6.9
DO45281
0 years, male, NA, stage:4, alive, 750 days
6.8
DO48701
0 years, male, NA, stage:2, alive, 780 days
6.6
DO45111
0 years, male, NA, stage:2, alive, 1590 days
6.4
DO23518
0 years, male, NA, stage:2, alive, 1320 days
6.4
DO50822
0 years, male, NA, stage:2, alive, 510 days
6.3
DO45215
0 years, male, NA, stage:2, alive, 1170 days
6.2
DO48742
0 years, male, NA, stage:2, alive, 600 days
6.2
DO50798
0 years, male, NA, stage:3, dead, 30 days
6.2
DO45209
0 years, male, NA, stage:4, alive, 1350 days
6.0
DO50857
0 years, male, NA, stage:2, alive, 210 days
5.9
DO50803
0 years, female, NA, stage:1, alive, 540 days
5.9
DO227643
0 years, male, NA, stage:2, alive, 1260 days
5.9
DO45237
0 years, male, NA, stage:2, alive, 900 days
5.8
DO45109
0 years, male, NA, stage:2, alive, 1590 days
5.6
DO45117
0 years, female, NA, stage:2, dead, 1110 days
5.6
DO45247
0 years, female, NA, stage:2, alive, 210 days
5.5
DO45167
0 years, male, NA, stage:2, dead, 1440 days
5.4
DO23539
0 years, male, NA, stage:1, alive, 1110 days
5.4
DO23532
0 years, female, NA, stage:1, alive, 960 days
5.4
DO23511
0 years, female, NA, stage:3, dead, 180 days
5.2
DO23509
0 years, male, NA, stage:3, dead, 780 days
5.1
DO23517
0 years, male, NA, stage:2, alive, 1200 days
5.0
DO48760
0 years, female, NA, stage:2, alive, 690 days
5.0
DO50791
0 years, female, NA, stage:1, dead, 480 days
5.0
DO23551
0 years, male, NA, stage:3, dead, 150 days
4.3
DO23538
0 years, male, NA, stage:2, alive, 450 days
4.2
DO48719
0 years, male, NA, stage:2, alive, 690 days
4.0
DO48741
0 years, male, NA, stage:3, alive, 240 days
3.8
DO48693
0 years, male, NA, stage:2, alive, 900 days
3.6
DO45255
0 years, male, NA, stage:3, alive, 720 days
3.5
DO48674
0 years, male, NA, stage:2, alive, 1260 days
3.4
DO45175
0 years, male, NA, stage:2, alive, 1140 days
3.2
DO45241
0 years, male, NA, stage:1, alive, 1080 days
2.9
DO23529
0 years, male, NA, stage:4, alive, 930 days
2.8
DO48706
0 years, male, NA, stage:2, alive, 870 days
2.7
DO23544
0 years, male, NA, stage:2, alive, 960 days
2.3
DO45259
0 years, male, NA, stage:3, alive, 330 days
2.2
DO45195
0 years, male, NA, stage:1, alive, 390 days
1.6
DO45129
0 years, male, NA, stage:3, alive, 1470 days
1.2
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
817
Tumor
0.9
641
Tumor
0.8
921
Tumor
0.8
483
Tumor
0.8
983
Tumor
0.7
473
Tumor
0.7
271
Tumor
0.6
1027
Tumor
0.6
873
Tumor
0.6
135
Tumor
0.6
913
Tumor
0.6
1021
Tumor
0.6
331
Tumor
0.5
515
Tumor
0.5
975
Tumor
0.5
375
Tumor
0.5
533
Tumor
0.5
1031
Tumor
0.5
471
Tumor
0.5
1013
Tumor
0.5
881
Tumor
0.5
523
Tumor
0.5
493
Tumor
0.5
487
Tumor
0.4
311
Tumor
0.4
617
Tumor
0.4
737
Tumor
0.4
455
Tumor
0.4
865
Tumor
0.4
427
Tumor
0.4
465
Tumor
0.4
1043
Tumor
0.3
777
Tumor
0.3
814
Normal
0.3
695
Tumor
0.3
395
Tumor
0.3
537
Tumor
0.3
525
Tumor
0.3
563
Tumor
0.3
545
Tumor
0.3
685
Tumor
0.3
267
Tumor
0.3
221
Tumor
0.3
517
Tumor
0.3
727
Tumor
0.3
851
Tumor
0.3
125
Tumor
0.2
877
Tumor
0.2
223
Tumor
0.2
1025
Tumor
0.2
923
Tumor
0.2
137
Tumor
0.2
131
Tumor
0.2
553
Tumor
0.2
1045
Tumor
0.2
297
Tumor
0.2
951
Tumor
0.2
671
Tumor
0.2
925
Tumor
0.2
535
Tumor
0.2
497
Tumor
0.2
283
Tumor
0.2
213
Tumor
0.2
745
Tumor
0.2
461
Tumor
0.2
513
Tumor
0.2
823
Tumor
0.2
492
Normal
0.2
463
Tumor
0.2
957
Tumor
0.2
977
Tumor
0.2
257
Tumor
0.2
663
Tumor
0.1
443
Tumor
0.1
953
Tumor
0.1
857
Tumor
0.1
285
Tumor
0.1
883
Tumor
0.1
367
Tumor
0.1
741
Tumor
0.1
567
Tumor
0.1
867
Tumor
0.1
141
Tumor
0.1
915
Tumor
0.1
413
Tumor
0.1
224
Normal
0.1
478
Normal
0.1
211
Tumor
0.1
145
Tumor
0.1
421
Tumor
0.1
161
Tumor
0.1
277
Tumor
0.1
147
Tumor
0.1
697
Tumor
0.1
447
Tumor
0.1
937
Tumor
0.1
185
Tumor
0.1
524
Normal
0.1
284
Normal
0.1
313
Tumor
0.1
385
Tumor
0.1
863
Tumor
0.1
481
Tumor
0.1
755
Tumor
0.1
1015
Tumor
0.1
647
Tumor
0.1
926
Normal
0.1
435
Tumor
0.1
716
Normal
0.1
916
Normal
0.1
943
Tumor
0.1
813
Tumor
0.1
498
Normal
0.1
635
Tumor
0.1
917
Tumor
0.1
415
Tumor
0.1
978
Normal
0.1
416
Normal
0.0
922
Normal
0.0
536
Normal
0.0
425
Tumor
0.0
217
Tumor
0.0
874
Normal
0.0
434
Normal
0.0
954
Normal
0.0
171
Tumor
0.0
785
Tumor
0.0
721
Tumor
0.0
982
Normal
0.0
228
Normal
0.0
262
Normal
0.0
878
Normal
0.0
268
Normal
0.0
444
Normal
0.0
112
Tumor
0.0
743
Tumor
0.0
355
Tumor
0.0
474
Normal
0.0
477
Tumor
0.0
724
Normal
0.0
328
Normal
0.0
527
Tumor
0.0
212
Normal
0.0
411
Tumor
0.0
472
Normal
0.0
952
Normal
0.0
341
Tumor
0.0
482
Normal
0.0
861
Tumor
0.0
956
Normal
0.0
918
Normal
0.0
966
Normal
0.0
467
Tumor
0.0
742
Normal
0.0
963
Tumor
0.0
528
Normal
0.0
882
Normal
-0.1
738
Normal
-0.1
1016
Normal
-0.1
967
Tumor
-0.1
363
Tumor
-0.1
944
Normal
-0.1
661
Tumor
-0.1
924
Normal
-0.1
1042
Normal
-0.1
884
Normal
-0.1
984
Normal
-0.1
914
Normal
-0.1
138
Normal
-0.1
142
Normal
-0.1
516
Normal
-0.1
192
Normal
-0.1
714
Normal
-0.1
862
Normal
-0.1
494
Normal
-0.1
698
Normal
-0.1
456
Normal
-0.1
866
Normal
-0.1
852
Normal
-0.1
364
Normal
-0.1
546
Normal
-0.1
384
Normal
-0.1
436
Normal
-0.1
312
Normal
-0.1
286
Normal
-0.1
627
Tumor
-0.1
332
Normal
-0.1
127
Tumor
-0.1
484
Normal
-0.1
393
Tumor
-0.1
298
Normal
-0.1
488
Normal
-0.1
1022
Normal
-0.1
195
Tumor
-0.1
722
Normal
-0.1
858
Normal
-0.1
132
Normal
-0.1
965
Tumor
-0.1
557
Tumor
-0.1
538
Normal
-0.1
314
Normal
-0.1
366
Normal
-0.1
383
Tumor
-0.1
1026
Normal
-0.1
422
Normal
-0.1
1014
Normal
-0.1
1044
Normal
-0.1
744
Normal
-0.1
362
Normal
-0.1
976
Normal
-0.1
146
Normal
-0.1
351
Tumor
-0.1
938
Normal
-0.1
554
Normal
-0.1
672
Normal
-0.1
728
Normal
-0.1
686
Normal
-0.1
278
Normal
-0.1
462
Normal
-0.1
786
Normal
-0.1
746
Normal
-0.1
864
Normal
-0.1
778
Normal
-0.1
452
Normal
-0.1
968
Normal
-0.1
111
Normal
-0.1
868
Normal
-0.1
1046
Normal
-0.1
713
Tumor
-0.1
1032
Normal
-0.1
188
Normal
-0.1
172
Normal
-0.1
446
Normal
-0.1
448
Normal
-0.1
573
Tumor
-0.1
534
Normal
-0.2
491
Tumor
-0.2
558
Normal
-0.2
723
Tumor
-0.2
357
Tumor
-0.2
1028
Normal
-0.2
191
Tumor
-0.2
386
Normal
-0.2
662
Normal
-0.2
756
Normal
-0.2
136
Normal
-0.2
696
Normal
-0.2
818
Normal
-0.2
124
Normal
-0.2
148
Normal
-0.2
356
Normal
-0.2
464
Normal
-0.2
232
Normal
-0.2
518
Normal
-0.2
272
Normal
-0.2
343
Tumor
-0.2
824
Normal
-0.2
344
Normal
-0.2
432
Normal
-0.2
126
Normal
-0.2
912
Normal
-0.2
424
Normal
-0.2
196
Normal
-0.2
568
Normal
-0.2
412
Normal
-0.2
981
Tumor
-0.2
1041
Tumor
-0.2
618
Normal
-0.2
423
Tumor
-0.2
958
Normal
-0.2
468
Normal
-0.2
445
Tumor
-0.2
186
Normal
-0.2
387
Tumor
-0.2
628
Normal
-0.2
396
Normal
-0.2
391
Tumor
-0.2
187
Tumor
-0.2
666
Normal
-0.2
218
Normal
-0.2
964
Normal
-0.2
113
Tumor
-0.2
514
Normal
-0.2
572
Normal
-0.2
214
Normal
-0.2
616
Normal
-0.2
128
Normal
-0.2
431
Tumor
-0.2
162
Normal
-0.2
376
Normal
-0.2
114
Normal
-0.2
451
Tumor
-0.3
231
Tumor
-0.3
352
Normal
-0.3
428
Normal
-0.3
574
Normal
-0.3
466
Normal
-0.3
258
Normal
-0.3
414
Normal
-0.3
392
Normal
-0.3
426
Normal
-0.3
571
Tumor
-0.3
665
Tumor
-0.3
368
Normal
-0.3
664
Normal
-0.3
564
Normal
-0.3
222
Normal
-0.3
815
Tumor
-0.3
715
Tumor
-0.3
342
Normal
-0.3
433
Tumor
-0.3
394
Normal
-0.3
816
Normal
-0.3
327
Tumor
-0.3
648
Normal
-0.3
261
Tumor
-0.3
353
Tumor
-0.3
526
Normal
-0.3
358
Normal
-0.4
388
Normal
-0.4
955
Tumor
-0.4
354
Normal
-0.4
365
Tumor
-0.4
642
Normal
-0.4
636
Normal
-0.4
227
Tumor
-0.4
123
Tumor
-0.5
615
Tumor
-0.6
361
Tumor
-0.7
911
Tumor
-0.8
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
