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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SERPINH1 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
56.6
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
1288.8
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
454.8
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
326.2
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
285.1
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
275.7
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
249.8
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
246.8
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
231.1
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
224.3
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
220.0
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
204.9
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
184.7
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
184.0
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
181.3
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
179.7
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
173.0
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
170.1
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
163.7
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
145.2
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
140.2
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
139.1
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
133.1
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
131.9
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
129.7
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
124.7
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
123.3
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
122.3
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
119.4
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
116.6
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
116.1
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
115.4
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
113.6
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
113.4
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
112.7
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
111.1
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
107.6
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
102.5
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
97.3
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
96.5
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
96.2
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
95.4
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
94.3
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
93.9
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
93.3
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
90.7
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
90.0
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
89.5
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
89.3
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
89.1
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
87.7
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
86.9
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
86.9
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
86.9
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
86.2
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
86.0
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
84.9
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
84.9
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
84.1
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
83.0
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
78.8
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
77.6
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
77.5
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
77.4
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
76.8
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
76.6
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
76.1
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
75.9
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
75.8
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
75.0
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
74.5
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
74.4
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
74.2
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
74.1
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
72.7
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
72.4
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
72.2
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
71.9
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
71.9
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
71.3
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
71.2
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
70.9
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
70.4
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
70.1
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
70.0
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
69.5
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
68.9
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
68.5
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
68.2
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
67.6
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
66.3
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
66.1
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
65.6
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
65.4
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
64.9
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
64.8
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
64.5
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
64.5
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
64.4
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
63.2
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
62.7
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
60.5
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
60.0
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
59.8
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
57.8
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
57.6
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
56.5
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
56.1
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
56.1
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
56.1
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
55.6
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
55.3
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
55.2
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
55.0
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
53.5
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
53.4
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
53.1
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
53.1
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
52.8
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
52.4
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
52.4
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
52.3
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
51.5
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
51.3
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
51.1
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
51.1
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
50.9
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
50.7
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
50.0
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
49.8
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
49.5
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
49.1
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
49.1
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
48.8
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
48.1
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
48.0
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
47.8
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
47.6
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
47.4
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
46.9
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
46.6
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
46.2
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
46.2
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
45.7
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
45.6
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
45.4
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
45.2
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
44.4
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
44.2
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
44.0
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
44.0
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
43.8
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
43.5
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
43.5
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
43.4
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
43.3
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
42.8
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
42.6
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
42.0
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
41.9
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
41.6
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
41.6
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
41.5
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
41.0
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
40.7
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
40.6
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
40.6
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
40.4
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
40.4
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
39.9
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
39.0
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
39.0
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
39.0
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
38.8
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
38.8
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
38.7
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
38.5
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
38.4
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
38.3
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
38.3
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
38.3
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
38.3
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
38.3
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
38.2
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
38.1
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
38.1
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
37.6
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
37.1
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
37.0
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
36.9
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
36.9
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
36.8
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
36.7
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
36.1
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
36.0
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
35.9
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
35.4
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
35.4
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
35.0
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
34.9
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
34.9
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
34.7
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
34.6
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
34.4
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
34.3
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
34.2
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
34.2
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
34.1
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
33.9
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
33.9
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
33.7
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
33.7
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
33.5
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
33.1
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
32.9
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
32.9
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
32.8
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
32.4
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
32.2
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
32.1
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
32.1
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
31.3
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
31.0
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
31.0
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
31.0
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
30.8
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
30.7
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
30.5
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
30.3
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
30.2
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
30.2
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
30.1
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
30.0
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
29.9
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
29.5
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
29.3
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
29.2
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
28.8
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
28.6
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
28.3
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
28.2
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
28.0
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
27.9
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
27.9
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
27.6
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
27.6
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
27.5
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
27.4
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
26.3
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
26.3
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
26.1
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
25.8
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
25.8
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
25.7
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
25.7
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
25.7
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
25.5
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
25.4
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
25.4
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
25.0
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
24.9
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
24.8
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
24.7
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
24.7
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
24.1
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
24.1
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
24.1
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
24.1
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
24.0
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
23.7
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
23.7
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
23.7
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
22.9
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
22.8
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
22.8
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
22.7
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
22.2
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
22.1
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
22.0
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
22.0
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
22.0
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
21.7
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
21.7
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
21.7
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
21.6
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
21.1
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
20.6
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
20.6
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
20.5
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
20.1
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
20.0
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
19.6
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
19.6
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
19.5
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
19.5
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
19.4
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
19.4
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
19.3
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
19.3
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
19.2
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
19.0
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
18.9
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
18.7
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
18.4
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
18.4
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
18.0
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
17.7
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
17.6
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
17.3
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
17.3
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
17.3
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
17.0
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
16.8
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
16.8
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
16.7
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
16.6
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
16.5
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
16.5
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
16.4
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
16.3
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
16.3
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
16.0
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
15.9
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
15.6
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
15.5
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
15.4
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
15.2
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
15.1
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
15.0
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
15.0
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
14.9
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
14.9
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
14.9
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
14.8
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
14.8
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
14.7
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
14.7
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
14.7
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
14.4
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
14.2
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
14.2
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
14.1
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
14.1
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
13.7
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
13.4
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
13.2
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
13.1
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
13.0
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
12.5
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
12.5
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
12.3
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
11.3
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
11.3
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
11.2
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
10.2
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
9.7
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
9.6
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
9.5
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
9.5
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
9.1
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
9.1
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
8.5
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SERPINH1 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
60.9
Number of samples
231
Samples
Sample
Description
TPM
DO50815
0 years, male, NA, stage:3, alive, 150 days
754.9
DO45155
0 years, male, NA, stage:2, alive, 2160 days
508.5
DO45243
0 years, female, NA, stage:3, alive, 930 days
428.6
DO48733
0 years, male, NA, stage:2, alive, 600 days
401.7
DO45305
0 years, male, NA, stage:4, alive, 300 days
308.8
DO23547
0 years, male, NA, stage:1, alive, 1020 days
271.1
DO45209
0 years, male, NA, stage:4, alive, 1350 days
251.8
DO45185
0 years, male, NA, stage:2, alive, 600 days
241.1
DO50774
0 years, female, NA, stage:2, alive, 720 days
230.6
DO50857
0 years, male, NA, stage:2, alive, 210 days
215.7
DO23551
0 years, male, NA, stage:3, dead, 150 days
205.2
DO45127
0 years, male, NA, stage:3, dead, 420 days
201.5
DO45273
0 years, male, NA, stage:2, alive, 480 days
191.4
DO45307
0 years, female, NA, stage:4, dead, 240 days
178.9
DO50800
0 years, male, NA, stage:2, alive, 510 days
167.5
DO45297
0 years, female, NA, stage:4, dead, 1260 days
155.4
DO45145
0 years, male, NA, stage:3, dead, 60 days
153.0
DO50820
0 years, female, NA, stage:3, alive, 510 days
149.7
DO23552
0 years, female, NA, stage:1, alive, 810 days
147.0
DO45289
0 years, female, NA, stage:3, alive, 360 days
146.7
DO50829
0 years, male, NA, stage:3, alive, 570 days
143.9
DO50855
0 years, male, NA, stage:2, alive, 570 days
137.7
DO48730
0 years, female, NA, stage:2, alive, 630 days
135.1
DO48747
0 years, male, NA, stage:3, alive, 540 days
132.4
DO50778
0 years, male, NA, stage:4, alive, 630 days
128.2
DO45139
0 years, male, NA, stage:3, alive, 1320 days
123.0
DO45277
0 years, male, NA, stage:3, alive, 600 days
115.2
DO23515
0 years, male, NA, stage:2, alive, 1230 days
113.1
DO48737
0 years, male, NA, stage:1, alive, 720 days
109.4
DO45301
0 years, male, NA, stage:2, dead, 1440 days
107.9
DO45201
0 years, male, NA, stage:1, alive, 900 days
107.5
DO45239
0 years, male, NA, stage:2, alive, 870 days
103.3
DO45103
0 years, male, NA, stage:3, alive, 450 days
103.0
DO48697
0 years, female, NA, stage:2, dead, 810 days
102.6
DO45211
0 years, male, NA, stage:3, alive, 240 days
101.4
DO45231
0 years, male, NA, stage:2, alive, 930 days
101.1
DO48720
0 years, female, NA, stage:2, alive, 570 days
93.7
DO45283
0 years, male, NA, stage:3, alive, 510 days
89.2
DO45279
0 years, male, NA, stage:3, alive, 1290 days
88.3
DO45259
0 years, male, NA, stage:3, alive, 330 days
87.6
DO50808
0 years, male, NA, stage:2, alive, 570 days
83.8
DO45197
0 years, male, NA, stage:2, alive, 1170 days
83.8
DO45249
0 years, male, NA, stage:1, alive, 630 days
83.5
DO23526
0 years, male, NA, stage:3, alive, 1050 days
82.2
DO45189
0 years, female, NA, stage:2, alive, 1200 days
81.4
DO45213
0 years, male, NA, stage:1, alive, 1200 days
80.6
DO45183
0 years, female, NA, stage:2, dead, 570 days
79.8
DO50799
0 years, female, NA, stage:2, alive, 540 days
79.3
DO23546
0 years, male, NA, stage:2, alive, 1050 days
78.8
DO45275
0 years, male, NA, stage:3, dead, 10 days
78.1
DO45285
0 years, male, NA, stage:3, alive, 480 days
77.1
DO45303
0 years, female, NA, stage:3, alive, 990 days
73.9
DO45251
0 years, female, NA, stage:2, alive, 900 days
73.3
DO45217
0 years, female, NA, stage:3, dead, 270 days
72.8
DO23535
0 years, male, NA, stage:1, alive, 960 days
72.5
DO50789
0 years, female, NA, stage:2, alive, 570 days
72.3
DO45187
0 years, female, NA, stage:1, alive, 1260 days
71.5
DO45287
0 years, male, NA, stage:1, alive, 390 days
69.6
DO48701
0 years, male, NA, stage:2, alive, 780 days
69.4
DO45135
0 years, male, NA, stage:1, alive, 1410 days
67.3
DO45179
0 years, female, NA, stage:2, alive, 600 days
66.8
DO45165
0 years, male, NA, stage:2, alive, 690 days
66.8
DO48712
0 years, male, NA, stage:2, alive, 810 days
66.3
DO45265
0 years, male, NA, stage:3, alive, 1020 days
65.2
DO45137
0 years, male, NA, stage:1, alive, 1320 days
64.6
DO50803
0 years, female, NA, stage:1, alive, 540 days
63.2
DO23530
0 years, male, NA, stage:4, dead, 180 days
62.1
DO45299
0 years, female, NA, stage:1, alive, 1440 days
60.5
DO23524
0 years, female, NA, stage:2, alive, 1050 days
60.5
DO23537
0 years, male, NA, stage:2, dead, 900 days
59.5
DO23521
0 years, male, NA, stage:3, alive, 1110 days
58.9
DO45153
0 years, female, NA, stage:2, alive, 1380 days
58.0
DO50805
0 years, male, NA, stage:2, alive, 690 days
57.3
DO45205
0 years, female, NA, stage:2, dead, 90 days
56.7
DO45177
0 years, female, NA, stage:3, alive, 1260 days
55.3
DO48681
0 years, male, NA, stage:2, alive, 900 days
54.5
DO23519
0 years, male, NA, stage:3, alive, 630 days
53.7
DO45092
0 years, male, NA, stage:4, dead, 1200 days
53.5
DO45269
0 years, male, NA, stage:3, alive, 750 days
53.4
DO50819
0 years, female, NA, stage:2, alive, 510 days
52.8
DO50807
0 years, male, NA, stage:1, alive, 540 days
52.6
DO48736
0 years, female, NA, stage:1, alive, 600 days
52.5
DO48700
0 years, female, NA, stage:2, alive, 810 days
51.3
DO48728
0 years, female, NA, stage:2, alive, 150 days
48.7
DO45257
0 years, male, NA, stage:3, alive, 810 days
47.6
DO45267
0 years, male, NA, stage:3, dead, 570 days
45.2
DO45157
0 years, male, NA, stage:2, alive, 1980 days
45.1
DO45233
0 years, male, NA, stage:3, alive, 900 days
44.7
DO45241
0 years, male, NA, stage:1, alive, 1080 days
44.4
DO48742
0 years, male, NA, stage:2, alive, 600 days
43.8
DO45247
0 years, female, NA, stage:2, alive, 210 days
43.5
DO45261
0 years, male, NA, stage:3, alive, 990 days
43.3
DO48717
0 years, male, NA, stage:4, dead, 180 days
43.2
DO48725
0 years, male, NA, stage:1, alive, 780 days
43.2
DO45223
0 years, male, NA, stage:4, alive, 1020 days
43.1
DO23508
0 years, female, NA, stage:2, alive, 390 days
42.8
DO45095
0 years, male, NA, stage:2, alive, 1620 days
41.8
DO50845
0 years, male, NA, stage:3, alive, 210 days
41.7
DO48715
0 years, female, NA, stage:2, dead, 690 days
41.2
DO23510
0 years, female, NA, stage:2, alive, 870 days
41.2
DO50809
0 years, male, NA, stage:3, dead, 720 days
41.1
DO45263
0 years, male, NA, stage:3, dead, 270 days
41.0
DO45207
0 years, male, NA, stage:1, alive, 1050 days
40.9
DO48759
0 years, male, NA, stage:3, alive, 720 days
40.8
DO45245
0 years, female, NA, stage:2, dead, 240 days
39.2
DO45281
0 years, male, NA, stage:4, alive, 750 days
38.3
DO45099
0 years, male, NA, stage:3, alive, 1590 days
38.3
DO48761
0 years, male, NA, stage:2, alive, 870 days
37.8
DO45203
0 years, female, NA, stage:2, alive, 1170 days
37.7
DO48743
0 years, female, NA, stage:2, alive, 570 days
37.2
DO23523
0 years, male, NA, stage:3, alive, 1080 days
36.9
DO48757
0 years, female, NA, stage:3, alive, 480 days
36.4
DO45141
0 years, male, NA, stage:2, alive, 1320 days
36.4
DO50791
0 years, female, NA, stage:1, dead, 480 days
36.0
DO45121
0 years, male, NA, stage:3, alive, 1530 days
36.0
DO50850
0 years, male, NA, stage:3, alive, 720 days
35.8
DO23528
0 years, female, NA, stage:2, alive, 1020 days
35.7
DO45109
0 years, male, NA, stage:2, alive, 1590 days
35.1
DO23536
0 years, male, NA, stage:2, alive, 930 days
34.8
DO45225
0 years, male, NA, stage:1, alive, 1050 days
34.4
DO23511
0 years, female, NA, stage:3, dead, 180 days
33.6
DO45219
0 years, male, NA, stage:2, alive, 1080 days
33.5
DO48679
0 years, male, NA, stage:2, alive, 1200 days
33.1
DO23545
0 years, male, NA, stage:2, dead, 570 days
33.0
DO23525
0 years, male, NA, stage:4, alive, 1050 days
32.5
DO45193
0 years, female, NA, stage:4, dead, 120 days
31.4
DO45253
0 years, male, NA, stage:2, alive, 870 days
31.3
DO45123
0 years, female, NA, stage:2, dead, 570 days
30.7
DO50832
0 years, male, NA, stage:3, alive, 90 days
30.7
DO23539
0 years, male, NA, stage:1, alive, 1110 days
30.7
DO48682
0 years, female, NA, stage:3, dead, 120 days
30.0
DO50840
0 years, male, NA, stage:2, alive, 330 days
29.8
DO45229
0 years, male, NA, stage:1, alive, 990 days
29.4
DO45107
0 years, female, NA, stage:2, alive, 1710 days
28.0
DO50813
0 years, male, NA, stage:2, alive, 420 days
27.9
DO50806
0 years, male, NA, stage:4, alive, 540 days
27.7
DO50798
0 years, male, NA, stage:3, dead, 30 days
27.4
DO45131
0 years, male, NA, stage:4, dead, 360 days
27.1
DO45119
0 years, male, NA, stage:3, dead, 510 days
26.9
DO45143
0 years, male, NA, stage:3, alive, 1290 days
26.2
DO45149
0 years, female, NA, stage:2, alive, 1260 days
25.5
DO50776
0 years, male, NA, stage:1, alive, 690 days
25.1
DO45161
0 years, male, NA, stage:2, dead, 540 days
25.1
DO23516
0 years, male, NA, stage:3, dead, 20 days
25.0
DO45191
0 years, female, NA, stage:2, alive, 1200 days
24.9
DO48732
0 years, male, NA, stage:3, alive, 630 days
24.8
DO23529
0 years, male, NA, stage:4, alive, 930 days
24.6
DO23512
0 years, male, NA, stage:1, alive, 1260 days
24.3
DO23541
0 years, male, NA, stage:2, alive, 930 days
24.2
DO23550
0 years, male, NA, stage:1, alive, 990 days
24.2
DO45199
0 years, female, NA, stage:2, alive, 1350 days
24.1
DO227801
0 years, female, NA, stage:1, alive, 660 days
23.9
DO23544
0 years, male, NA, stage:2, alive, 960 days
23.8
DO48693
0 years, male, NA, stage:2, alive, 900 days
23.4
DO45255
0 years, male, NA, stage:3, alive, 720 days
23.2
DO45096
0 years, male, NA, stage:2, dead, 1290 days
23.0
DO23534
0 years, male, NA, stage:2, alive, 840 days
22.6
DO50816
0 years, male, NA, stage:2, alive, 390 days
22.5
DO23527
0 years, male, NA, stage:1, alive, 1050 days
22.1
DO23532
0 years, female, NA, stage:1, alive, 960 days
21.8
DO45101
0 years, male, NA, stage:2, alive, 1680 days
21.7
DO45221
0 years, female, NA, stage:4, dead, 390 days
21.4
DO23548
0 years, female, NA, stage:1, alive, 840 days
21.4
DO45215
0 years, male, NA, stage:2, alive, 1170 days
21.2
DO45235
0 years, female, NA, stage:1, alive, 900 days
21.1
DO48716
0 years, male, NA, stage:2, alive, 720 days
21.0
DO45181
0 years, female, NA, stage:2, alive, 1200 days
20.9
DO48704
0 years, female, NA, stage:3, alive, 750 days
20.8
DO48706
0 years, male, NA, stage:2, alive, 870 days
20.6
DO50802
0 years, male, NA, stage:2, alive, 930 days
20.3
DO23509
0 years, male, NA, stage:3, dead, 780 days
20.3
DO50787
0 years, male, NA, stage:3, alive, 480 days
20.2
DO23514
0 years, male, NA, stage:2, alive, 1290 days
20.2
DO48723
0 years, male, NA, stage:1, alive, 600 days
19.7
DO50825
0 years, male, NA, stage:2, alive, 390 days
19.5
DO45159
0 years, male, NA, stage:3, alive, 1470 days
19.5
DO48672
0 years, male, NA, stage:2, alive, 450 days
19.4
DO23540
0 years, male, NA, stage:1, alive, 750 days
19.1
DO50811
0 years, male, NA, stage:1, alive, 450 days
18.9
DO50793
0 years, male, NA, stage:4, alive, 540 days
18.6
DO50785
0 years, male, NA, stage:4, dead, 90 days
18.6
DO45093
0 years, male, NA, stage:2, dead, 720 days
18.3
DO48760
0 years, female, NA, stage:2, alive, 690 days
17.9
DO45173
0 years, male, NA, stage:3, alive, 1170 days
17.9
DO45113
0 years, male, NA, stage:3, alive, 1560 days
17.8
DO23531
0 years, female, NA, stage:3, alive, 900 days
17.6
DO23518
0 years, male, NA, stage:2, alive, 1320 days
17.2
DO45105
0 years, male, NA, stage:1, alive, 1680 days
17.2
DO50844
0 years, male, NA, stage:4, alive, 300 days
17.1
DO45129
0 years, male, NA, stage:3, alive, 1470 days
16.5
DO50783
0 years, male, NA, stage:3, alive, 480 days
16.4
DO50839
0 years, female, NA, stage:3, alive, 330 days
16.0
DO23513
0 years, male, NA, stage:3, alive, 1200 days
15.9
DO50818
0 years, male, NA, stage:2, alive, 510 days
15.8
DO45091
0 years, male, NA, stage:2, dead, 1320 days
15.6
DO45097
0 years, male, NA, stage:3, alive, 1620 days
15.3
DO45125
0 years, male, NA, stage:3, alive, 1680 days
15.2
DO48751
0 years, male, NA, stage:2, dead, 480 days
15.2
DO48719
0 years, male, NA, stage:2, alive, 690 days
14.9
DO45094
0 years, male, NA, stage:3, alive, 1650 days
14.8
DO45167
0 years, male, NA, stage:2, dead, 1440 days
14.8
DO45175
0 years, male, NA, stage:2, alive, 1140 days
14.7
DO45227
0 years, female, NA, stage:2, alive, 1020 days
14.7
DO50814
0 years, male, NA, stage:3, alive, 420 days
14.2
DO45237
0 years, male, NA, stage:2, alive, 900 days
14.1
DO50822
0 years, male, NA, stage:2, alive, 510 days
13.9
DO23542
0 years, male, NA, stage:3, alive, 960 days
13.8
DO48677
0 years, male, NA, stage:3, alive, 1140 days
13.6
DO23543
0 years, male, NA, stage:2, alive, 1020 days
13.5
DO23538
0 years, male, NA, stage:2, alive, 450 days
13.3
DO48746
0 years, male, NA, stage:3, alive, 570 days
13.1
DO50804
0 years, male, NA, stage:2, alive, 720 days
12.4
DO227643
0 years, male, NA, stage:2, alive, 1260 days
12.4
DO48695
0 years, male, NA, stage:2, alive, 720 days
12.4
DO45195
0 years, male, NA, stage:1, alive, 390 days
12.2
DO45117
0 years, female, NA, stage:2, dead, 1110 days
12.0
DO23533
0 years, male, NA, stage:2, alive, 900 days
11.9
DO48721
0 years, female, NA, stage:1, alive, 900 days
11.5
DO45115
0 years, male, NA, stage:2, alive, 840 days
11.5
DO23549
0 years, male, NA, stage:3, alive, 990 days
11.4
DO50817
0 years, male, NA, stage:2, alive, 390 days
10.4
DO45111
0 years, male, NA, stage:2, alive, 1590 days
10.0
DO48727
0 years, female, NA, stage:2, dead, 390 days
9.7
DO45169
0 years, male, NA, stage:3, alive, 1350 days
9.7
DO23517
0 years, male, NA, stage:2, alive, 1200 days
9.1
DO45133
0 years, male, NA, stage:3, dead, 660 days
7.8
DO48674
0 years, male, NA, stage:2, alive, 1260 days
7.4
DO48741
0 years, male, NA, stage:3, alive, 240 days
7.1
DO45171
0 years, male, NA, stage:3, alive, 600 days
7.1
DO50859
0 years, male, NA, stage:2, alive, 180 days
6.0
DO45163
0 years, male, NA, stage:2, alive, 960 days
4.7
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
283
Tumor
2.6
743
Tumor
2.1
671
Tumor
1.3
297
Tumor
1.2
311
Tumor
1.2
917
Tumor
1.2
943
Tumor
1.1
455
Tumor
1.1
814
Normal
1.1
331
Tumor
1.1
881
Tumor
1.1
385
Tumor
1.1
817
Tumor
1.0
877
Tumor
1.0
343
Tumor
1.0
367
Tumor
1.0
713
Tumor
1.0
813
Tumor
1.0
413
Tumor
0.9
545
Tumor
0.9
661
Tumor
0.9
463
Tumor
0.9
351
Tumor
0.9
227
Tumor
0.9
967
Tumor
0.8
536
Normal
0.8
447
Tumor
0.8
285
Tumor
0.8
535
Tumor
0.8
857
Tumor
0.8
641
Tumor
0.8
363
Tumor
0.7
145
Tumor
0.7
491
Tumor
0.7
975
Tumor
0.7
983
Tumor
0.6
421
Tumor
0.6
525
Tumor
0.6
435
Tumor
0.6
923
Tumor
0.6
473
Tumor
0.6
433
Tumor
0.5
444
Normal
0.5
517
Tumor
0.5
863
Tumor
0.5
277
Tumor
0.5
697
Tumor
0.5
1045
Tumor
0.5
125
Tumor
0.4
563
Tumor
0.4
383
Tumor
0.4
921
Tumor
0.4
217
Tumor
0.4
161
Tumor
0.4
213
Tumor
0.4
131
Tumor
0.4
1015
Tumor
0.4
963
Tumor
0.4
427
Tumor
0.4
727
Tumor
0.3
461
Tumor
0.3
365
Tumor
0.3
355
Tumor
0.3
785
Tumor
0.3
567
Tumor
0.3
141
Tumor
0.3
647
Tumor
0.3
391
Tumor
0.3
185
Tumor
0.3
883
Tumor
0.2
113
Tumor
0.2
492
Normal
0.2
192
Normal
0.2
195
Tumor
0.2
965
Tumor
0.2
187
Tumor
0.2
617
Tumor
0.2
737
Tumor
0.2
191
Tumor
0.2
361
Tumor
0.2
411
Tumor
0.2
268
Normal
0.2
375
Tumor
0.2
223
Tumor
0.2
224
Normal
0.2
695
Tumor
0.1
188
Normal
0.1
478
Normal
0.1
498
Normal
0.1
368
Normal
0.1
493
Tumor
0.1
1013
Tumor
0.1
553
Tumor
0.1
284
Normal
0.1
873
Tumor
0.1
573
Tumor
0.1
537
Tumor
0.1
497
Tumor
0.1
261
Tumor
0.1
135
Tumor
0.1
211
Tumor
0.1
395
Tumor
0.1
627
Tumor
0.1
916
Normal
0.1
137
Tumor
0.1
467
Tumor
0.1
715
Tumor
0.1
913
Tumor
0.0
221
Tumor
0.0
571
Tumor
0.0
861
Tumor
0.0
124
Normal
0.0
344
Normal
0.0
823
Tumor
0.0
524
Normal
0.0
228
Normal
0.0
557
Tumor
0.0
147
Tumor
0.0
312
Normal
0.0
672
Normal
0.0
851
Tumor
0.0
341
Tumor
0.0
744
Normal
0.0
1028
Normal
0.0
262
Normal
0.0
1025
Tumor
0.0
286
Normal
0.0
665
Tumor
0.0
126
Normal
-0.1
445
Tumor
-0.1
127
Tumor
-0.1
386
Normal
-0.1
313
Tumor
-0.1
852
Normal
-0.1
951
Tumor
-0.1
721
Tumor
-0.1
327
Tumor
-0.1
146
Normal
-0.1
976
Normal
-0.1
434
Normal
-0.1
745
Tumor
-0.1
724
Normal
-0.1
212
Normal
-0.1
867
Tumor
-0.1
384
Normal
-0.1
981
Tumor
-0.1
515
Tumor
-0.1
815
Tumor
-0.1
387
Tumor
-0.1
663
Tumor
-0.1
416
Normal
-0.1
364
Normal
-0.1
1043
Tumor
-0.2
353
Tumor
-0.2
392
Normal
-0.2
977
Tumor
-0.2
394
Normal
-0.2
558
Normal
-0.2
874
Normal
-0.2
1044
Normal
-0.2
628
Normal
-0.2
352
Normal
-0.2
332
Normal
-0.2
357
Tumor
-0.2
271
Tumor
-0.2
423
Tumor
-0.2
635
Tumor
-0.2
528
Normal
-0.2
354
Normal
-0.2
982
Normal
-0.2
642
Normal
-0.2
538
Normal
-0.2
523
Tumor
-0.2
696
Normal
-0.2
138
Normal
-0.2
415
Tumor
-0.2
218
Normal
-0.2
868
Normal
-0.2
483
Tumor
-0.2
615
Tumor
-0.2
451
Tumor
-0.2
362
Normal
-0.2
984
Normal
-0.2
978
Normal
-0.2
267
Tumor
-0.2
878
Normal
-0.2
298
Normal
-0.2
111
Normal
-0.2
778
Normal
-0.2
956
Normal
-0.3
376
Normal
-0.3
662
Normal
-0.3
686
Normal
-0.3
574
Normal
-0.3
884
Normal
-0.3
722
Normal
-0.3
396
Normal
-0.3
214
Normal
-0.3
171
Tumor
-0.3
816
Normal
-0.3
468
Normal
-0.3
1027
Tumor
-0.3
918
Normal
-0.3
278
Normal
-0.3
342
Normal
-0.3
393
Tumor
-0.3
424
Normal
-0.3
966
Normal
-0.3
136
Normal
-0.3
957
Tumor
-0.3
925
Tumor
-0.3
142
Normal
-0.3
412
Normal
-0.3
114
Normal
-0.3
516
Normal
-0.3
356
Normal
-0.3
954
Normal
-0.3
958
Normal
-0.3
328
Normal
-0.3
526
Normal
-0.3
728
Normal
-0.3
968
Normal
-0.3
666
Normal
-0.3
1014
Normal
-0.3
474
Normal
-0.3
953
Tumor
-0.3
366
Normal
-0.3
257
Tumor
-0.3
786
Normal
-0.3
924
Normal
-0.3
471
Tumor
-0.3
466
Normal
-0.3
1046
Normal
-0.3
513
Tumor
-0.3
554
Normal
-0.3
723
Tumor
-0.3
741
Tumor
-0.3
514
Normal
-0.3
456
Normal
-0.3
481
Tumor
-0.3
132
Normal
-0.4
464
Normal
-0.4
742
Normal
-0.4
314
Normal
-0.4
425
Tumor
-0.4
685
Tumor
-0.4
487
Tumor
-0.4
777
Tumor
-0.4
1021
Tumor
-0.4
1031
Tumor
-0.4
358
Normal
-0.4
952
Normal
-0.4
436
Normal
-0.4
636
Normal
-0.4
912
Normal
-0.4
738
Normal
-0.4
477
Tumor
-0.4
914
Normal
-0.4
232
Normal
-0.4
818
Normal
-0.4
882
Normal
-0.4
446
Normal
-0.4
428
Normal
-0.4
664
Normal
-0.4
533
Tumor
-0.4
448
Normal
-0.4
272
Normal
-0.4
926
Normal
-0.4
865
Tumor
-0.4
1016
Normal
-0.4
564
Normal
-0.4
922
Normal
-0.4
1022
Normal
-0.4
824
Normal
-0.4
388
Normal
-0.4
572
Normal
-0.4
698
Normal
-0.4
1042
Normal
-0.4
755
Tumor
-0.4
432
Normal
-0.4
148
Normal
-0.4
422
Normal
-0.4
128
Normal
-0.4
488
Normal
-0.4
944
Normal
-0.5
937
Tumor
-0.5
648
Normal
-0.5
866
Normal
-0.5
452
Normal
-0.5
112
Tumor
-0.5
518
Normal
-0.5
568
Normal
-0.5
414
Normal
-0.5
196
Normal
-0.5
482
Normal
-0.5
443
Tumor
-0.5
494
Normal
-0.5
716
Normal
-0.5
746
Normal
-0.5
714
Normal
-0.5
1026
Normal
-0.5
258
Normal
-0.5
162
Normal
-0.5
186
Normal
-0.5
616
Normal
-0.5
964
Normal
-0.5
534
Normal
-0.5
862
Normal
-0.5
472
Normal
-0.5
864
Normal
-0.5
172
Normal
-0.5
858
Normal
-0.5
618
Normal
-0.5
756
Normal
-0.5
462
Normal
-0.5
527
Tumor
-0.6
1032
Normal
-0.6
465
Tumor
-0.6
222
Normal
-0.6
431
Tumor
-0.6
955
Tumor
-0.6
546
Normal
-0.6
123
Tumor
-0.6
231
Tumor
-0.6
911
Tumor
-0.6
426
Normal
-0.6
938
Normal
-0.6
484
Normal
-0.7
1041
Tumor
-0.9
915
Tumor
-1.0
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
