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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
CELF1 is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
20.0
Number of samples
362
Samples
Sample
Description
TPM
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
51.3
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
51.3
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
47.2
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
46.0
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
45.8
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
44.7
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
41.0
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
39.7
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
38.9
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
38.2
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
37.9
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
37.3
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
37.1
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
35.8
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
35.7
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
35.5
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
35.4
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
35.2
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
35.1
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
34.3
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
34.2
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
34.2
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
34.1
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
34.0
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
33.9
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
33.2
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
32.6
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
32.5
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
32.5
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
32.5
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
32.3
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
32.2
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
31.8
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
31.7
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
31.6
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
31.3
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
30.8
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
30.8
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
30.4
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
30.4
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
30.2
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
30.0
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
29.8
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
29.6
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
29.2
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
28.9
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
28.8
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
28.8
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
28.8
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
28.7
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
28.6
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
28.6
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
28.6
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
28.3
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
28.3
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
28.1
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
27.9
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
27.9
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
27.9
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
27.8
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
27.8
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
27.6
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
27.5
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
27.1
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
27.1
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
27.1
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
27.1
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
27.0
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
27.0
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
26.8
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
26.8
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
26.6
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
26.3
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
26.1
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
26.1
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
26.0
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
26.0
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
25.9
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
25.8
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
25.7
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
25.7
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
25.6
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
25.2
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
25.1
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
25.0
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
25.0
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
24.9
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
24.8
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
24.7
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
24.6
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
24.6
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
24.5
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
24.3
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
24.2
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
24.2
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
24.2
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
24.2
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
24.2
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
24.1
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
24.1
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
24.0
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
23.9
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
23.9
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
23.9
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
23.9
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
23.9
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
23.8
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
23.7
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
23.7
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
23.6
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
23.6
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
23.5
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
23.5
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
23.4
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
23.4
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
23.1
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
23.1
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
23.1
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
23.1
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
23.1
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
23.0
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
23.0
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
23.0
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
22.8
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
22.6
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
22.6
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
22.6
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
22.5
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
22.5
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
22.4
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
22.3
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
22.2
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
22.1
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
22.1
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
22.0
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
22.0
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
22.0
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
22.0
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
21.9
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
21.9
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
21.8
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
21.8
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
21.6
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
21.6
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
21.6
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
21.4
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
21.4
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
21.4
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
21.3
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
21.3
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
21.2
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
21.2
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
21.1
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
20.8
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
20.7
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
20.6
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
20.6
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
20.6
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
20.5
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
20.3
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
20.3
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
20.3
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
20.2
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
20.2
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
20.1
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
20.0
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
19.8
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
19.7
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
19.5
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
19.5
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
19.4
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
19.4
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
19.3
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
19.3
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
19.2
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
19.0
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
19.0
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
19.0
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
18.9
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
18.8
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
18.8
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
18.8
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
18.8
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
18.7
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
18.7
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
18.7
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
18.5
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
18.4
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
18.3
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
18.2
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
18.1
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
18.0
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
18.0
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
18.0
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
17.9
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
17.8
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
17.8
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
17.8
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
17.8
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
17.8
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
17.8
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
17.7
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
17.7
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
17.7
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
17.6
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
17.6
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
17.6
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
17.6
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
17.5
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
17.5
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
17.5
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
17.4
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
17.3
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
17.3
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
17.2
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
17.1
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
17.1
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
17.1
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
17.0
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
17.0
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
16.7
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
16.6
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
16.6
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
16.6
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
16.5
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
16.5
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
16.4
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
16.4
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
16.4
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
16.3
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
16.3
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
16.2
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
16.1
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
16.1
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
15.9
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
15.9
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
15.9
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
15.8
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
15.8
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
15.7
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
15.6
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
15.6
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
15.6
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
15.6
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
15.5
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
15.5
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
15.5
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
15.5
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
15.4
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
15.2
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
15.2
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
15.1
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
15.0
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
15.0
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
15.0
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
14.9
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
14.9
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
14.8
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
14.8
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
14.7
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
14.5
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
14.5
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
14.4
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
14.4
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
14.3
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
14.3
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
14.2
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
14.2
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
14.2
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
14.2
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
14.1
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
14.1
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
14.0
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
13.9
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
13.9
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
13.9
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
13.9
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
13.8
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
13.8
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
13.8
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
13.7
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
13.6
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
13.4
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
13.4
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
13.3
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
13.3
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
13.0
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
13.0
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
12.9
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
12.9
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
12.8
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
12.8
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
12.7
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
12.7
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
12.4
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
12.4
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
12.4
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
12.3
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
12.3
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
12.3
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
12.2
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
12.2
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
12.2
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
12.1
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
11.9
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
11.8
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
11.8
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
11.8
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
11.8
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
11.6
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
11.6
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
11.5
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
11.4
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
11.4
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
11.4
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
11.3
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
11.1
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
11.0
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
11.0
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
10.9
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
10.9
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
10.8
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
10.7
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
10.7
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
10.6
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
10.5
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
10.4
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
10.3
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
10.1
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
10.1
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
10.0
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
10.0
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
9.8
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
9.7
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
9.6
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
9.5
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
9.3
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
9.0
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
9.0
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
8.9
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
8.8
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
8.7
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
8.7
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
8.6
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
8.5
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
8.4
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
8.2
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
7.9
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
7.7
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
7.7
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
7.6
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
7.6
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
7.5
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
7.1
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
7.0
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
7.0
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
6.7
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
5.7
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
5.4
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
4.8
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
4.7
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
CELF1 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
26.6
Number of samples
231
Samples
Sample
Description
TPM
DO45217
0 years, female, NA, stage:3, dead, 270 days
58.0
DO50815
0 years, male, NA, stage:3, alive, 150 days
56.6
DO23526
0 years, male, NA, stage:3, alive, 1050 days
56.1
DO45209
0 years, male, NA, stage:4, alive, 1350 days
56.0
DO45131
0 years, male, NA, stage:4, dead, 360 days
54.0
DO48732
0 years, male, NA, stage:3, alive, 630 days
48.5
DO45277
0 years, male, NA, stage:3, alive, 600 days
46.2
DO23534
0 years, male, NA, stage:2, alive, 840 days
45.7
DO45273
0 years, male, NA, stage:2, alive, 480 days
44.5
DO23524
0 years, female, NA, stage:2, alive, 1050 days
44.1
DO45215
0 years, male, NA, stage:2, alive, 1170 days
43.9
DO23532
0 years, female, NA, stage:1, alive, 960 days
43.8
DO23512
0 years, male, NA, stage:1, alive, 1260 days
43.4
DO45145
0 years, male, NA, stage:3, dead, 60 days
43.3
DO23540
0 years, male, NA, stage:1, alive, 750 days
42.8
DO45243
0 years, female, NA, stage:3, alive, 930 days
42.5
DO23547
0 years, male, NA, stage:1, alive, 1020 days
41.6
DO45219
0 years, male, NA, stage:2, alive, 1080 days
41.4
DO45265
0 years, male, NA, stage:3, alive, 1020 days
40.7
DO45185
0 years, male, NA, stage:2, alive, 600 days
39.6
DO45179
0 years, female, NA, stage:2, alive, 600 days
39.4
DO45267
0 years, male, NA, stage:3, dead, 570 days
39.2
DO48757
0 years, female, NA, stage:3, alive, 480 days
39.2
DO45301
0 years, male, NA, stage:2, dead, 1440 days
38.9
DO45107
0 years, female, NA, stage:2, alive, 1710 days
38.9
DO50791
0 years, female, NA, stage:1, dead, 480 days
38.7
DO45253
0 years, male, NA, stage:2, alive, 870 days
38.5
DO23528
0 years, female, NA, stage:2, alive, 1020 days
37.9
DO45297
0 years, female, NA, stage:4, dead, 1260 days
37.5
DO48737
0 years, male, NA, stage:1, alive, 720 days
36.7
DO45197
0 years, male, NA, stage:2, alive, 1170 days
36.4
DO45153
0 years, female, NA, stage:2, alive, 1380 days
35.8
DO45257
0 years, male, NA, stage:3, alive, 810 days
35.7
DO45259
0 years, male, NA, stage:3, alive, 330 days
35.4
DO45245
0 years, female, NA, stage:2, dead, 240 days
34.8
DO45251
0 years, female, NA, stage:2, alive, 900 days
34.4
DO50799
0 years, female, NA, stage:2, alive, 540 days
34.1
DO23546
0 years, male, NA, stage:2, alive, 1050 days
33.7
DO48746
0 years, male, NA, stage:3, alive, 570 days
33.4
DO45281
0 years, male, NA, stage:4, alive, 750 days
33.4
DO50802
0 years, male, NA, stage:2, alive, 930 days
33.2
DO45207
0 years, male, NA, stage:1, alive, 1050 days
33.0
DO45227
0 years, female, NA, stage:2, alive, 1020 days
32.8
DO45213
0 years, male, NA, stage:1, alive, 1200 days
32.6
DO50855
0 years, male, NA, stage:2, alive, 570 days
32.5
DO45279
0 years, male, NA, stage:3, alive, 1290 days
32.4
DO45189
0 years, female, NA, stage:2, alive, 1200 days
32.4
DO48730
0 years, female, NA, stage:2, alive, 630 days
32.3
DO23510
0 years, female, NA, stage:2, alive, 870 days
32.1
DO45092
0 years, male, NA, stage:4, dead, 1200 days
32.1
DO50793
0 years, male, NA, stage:4, alive, 540 days
31.9
DO45161
0 years, male, NA, stage:2, dead, 540 days
31.9
DO45205
0 years, female, NA, stage:2, dead, 90 days
31.9
DO45249
0 years, male, NA, stage:1, alive, 630 days
31.6
DO45305
0 years, male, NA, stage:4, alive, 300 days
31.5
DO45105
0 years, male, NA, stage:1, alive, 1680 days
31.5
DO48736
0 years, female, NA, stage:1, alive, 600 days
31.5
DO48720
0 years, female, NA, stage:2, alive, 570 days
31.3
DO45141
0 years, male, NA, stage:2, alive, 1320 days
31.1
DO50811
0 years, male, NA, stage:1, alive, 450 days
31.0
DO45113
0 years, male, NA, stage:3, alive, 1560 days
31.0
DO45137
0 years, male, NA, stage:1, alive, 1320 days
30.5
DO23549
0 years, male, NA, stage:3, alive, 990 days
30.5
DO45121
0 years, male, NA, stage:3, alive, 1530 days
30.5
DO45203
0 years, female, NA, stage:2, alive, 1170 days
30.4
DO50816
0 years, male, NA, stage:2, alive, 390 days
30.3
DO50817
0 years, male, NA, stage:2, alive, 390 days
29.8
DO45123
0 years, female, NA, stage:2, dead, 570 days
29.8
DO45187
0 years, female, NA, stage:1, alive, 1260 days
29.7
DO45307
0 years, female, NA, stage:4, dead, 240 days
29.7
DO45211
0 years, male, NA, stage:3, alive, 240 days
29.6
DO45235
0 years, female, NA, stage:1, alive, 900 days
29.3
DO48733
0 years, male, NA, stage:2, alive, 600 days
29.3
DO45111
0 years, male, NA, stage:2, alive, 1590 days
28.8
DO23535
0 years, male, NA, stage:1, alive, 960 days
28.4
DO48717
0 years, male, NA, stage:4, dead, 180 days
28.4
DO45223
0 years, male, NA, stage:4, alive, 1020 days
28.3
DO45287
0 years, male, NA, stage:1, alive, 390 days
28.3
DO50800
0 years, male, NA, stage:2, alive, 510 days
28.3
DO23533
0 years, male, NA, stage:2, alive, 900 days
28.3
DO50820
0 years, female, NA, stage:3, alive, 510 days
28.1
DO23513
0 years, male, NA, stage:3, alive, 1200 days
28.1
DO45157
0 years, male, NA, stage:2, alive, 1980 days
28.0
DO23548
0 years, female, NA, stage:1, alive, 840 days
28.0
DO23537
0 years, male, NA, stage:2, dead, 900 days
27.9
DO48695
0 years, male, NA, stage:2, alive, 720 days
27.9
DO23517
0 years, male, NA, stage:2, alive, 1200 days
27.8
DO45191
0 years, female, NA, stage:2, alive, 1200 days
27.8
DO45143
0 years, male, NA, stage:3, alive, 1290 days
27.7
DO48682
0 years, female, NA, stage:3, dead, 120 days
27.6
DO50832
0 years, male, NA, stage:3, alive, 90 days
27.5
DO48712
0 years, male, NA, stage:2, alive, 810 days
27.5
DO50798
0 years, male, NA, stage:3, dead, 30 days
27.1
DO50819
0 years, female, NA, stage:2, alive, 510 days
27.0
DO45159
0 years, male, NA, stage:3, alive, 1470 days
26.9
DO45275
0 years, male, NA, stage:3, dead, 10 days
26.9
DO227643
0 years, male, NA, stage:2, alive, 1260 days
26.8
DO50809
0 years, male, NA, stage:3, dead, 720 days
26.5
DO50840
0 years, male, NA, stage:2, alive, 330 days
26.4
DO45231
0 years, male, NA, stage:2, alive, 930 days
26.4
DO48700
0 years, female, NA, stage:2, alive, 810 days
26.3
DO50850
0 years, male, NA, stage:3, alive, 720 days
26.2
DO23521
0 years, male, NA, stage:3, alive, 1110 days
26.2
DO45289
0 years, female, NA, stage:3, alive, 360 days
26.1
DO45225
0 years, male, NA, stage:1, alive, 1050 days
26.0
DO45283
0 years, male, NA, stage:3, alive, 510 days
25.8
DO23542
0 years, male, NA, stage:3, alive, 960 days
25.8
DO45155
0 years, male, NA, stage:2, alive, 2160 days
25.7
DO50813
0 years, male, NA, stage:2, alive, 420 days
25.6
DO23552
0 years, female, NA, stage:1, alive, 810 days
25.6
DO45139
0 years, male, NA, stage:3, alive, 1320 days
25.4
DO45247
0 years, female, NA, stage:2, alive, 210 days
25.4
DO50804
0 years, male, NA, stage:2, alive, 720 days
25.2
DO23536
0 years, male, NA, stage:2, alive, 930 days
25.1
DO23544
0 years, male, NA, stage:2, alive, 960 days
25.1
DO45263
0 years, male, NA, stage:3, dead, 270 days
24.9
DO45173
0 years, male, NA, stage:3, alive, 1170 days
24.9
DO45103
0 years, male, NA, stage:3, alive, 450 days
24.8
DO23516
0 years, male, NA, stage:3, dead, 20 days
24.8
DO23514
0 years, male, NA, stage:2, alive, 1290 days
24.7
DO45119
0 years, male, NA, stage:3, dead, 510 days
24.7
DO50787
0 years, male, NA, stage:3, alive, 480 days
24.5
DO50844
0 years, male, NA, stage:4, alive, 300 days
24.5
DO45167
0 years, male, NA, stage:2, dead, 1440 days
24.3
DO23523
0 years, male, NA, stage:3, alive, 1080 days
24.3
DO45099
0 years, male, NA, stage:3, alive, 1590 days
24.3
DO45149
0 years, female, NA, stage:2, alive, 1260 days
24.1
DO48701
0 years, male, NA, stage:2, alive, 780 days
24.0
DO48697
0 years, female, NA, stage:2, dead, 810 days
23.9
DO45303
0 years, female, NA, stage:3, alive, 990 days
23.9
DO48728
0 years, female, NA, stage:2, alive, 150 days
23.8
DO48672
0 years, male, NA, stage:2, alive, 450 days
23.7
DO23511
0 years, female, NA, stage:3, dead, 180 days
23.7
DO48725
0 years, male, NA, stage:1, alive, 780 days
23.6
DO48743
0 years, female, NA, stage:2, alive, 570 days
23.4
DO45201
0 years, male, NA, stage:1, alive, 900 days
23.4
DO45163
0 years, male, NA, stage:2, alive, 960 days
23.4
DO45193
0 years, female, NA, stage:4, dead, 120 days
23.3
DO45199
0 years, female, NA, stage:2, alive, 1350 days
23.3
DO45239
0 years, male, NA, stage:2, alive, 870 days
23.3
DO48723
0 years, male, NA, stage:1, alive, 600 days
23.3
DO45221
0 years, female, NA, stage:4, dead, 390 days
23.2
DO50803
0 years, female, NA, stage:1, alive, 540 days
23.2
DO50807
0 years, male, NA, stage:1, alive, 540 days
23.0
DO23543
0 years, male, NA, stage:2, alive, 1020 days
23.0
DO48727
0 years, female, NA, stage:2, dead, 390 days
22.8
DO48751
0 years, male, NA, stage:2, dead, 480 days
22.8
DO45101
0 years, male, NA, stage:2, alive, 1680 days
22.5
DO48716
0 years, male, NA, stage:2, alive, 720 days
22.4
DO50829
0 years, male, NA, stage:3, alive, 570 days
22.4
DO23509
0 years, male, NA, stage:3, dead, 780 days
22.2
DO50857
0 years, male, NA, stage:2, alive, 210 days
22.0
DO50845
0 years, male, NA, stage:3, alive, 210 days
22.0
DO45117
0 years, female, NA, stage:2, dead, 1110 days
21.8
DO45233
0 years, male, NA, stage:3, alive, 900 days
21.7
DO23529
0 years, male, NA, stage:4, alive, 930 days
21.7
DO48761
0 years, male, NA, stage:2, alive, 870 days
21.6
DO45299
0 years, female, NA, stage:1, alive, 1440 days
21.4
DO50778
0 years, male, NA, stage:4, alive, 630 days
21.2
DO45229
0 years, male, NA, stage:1, alive, 990 days
21.2
DO45269
0 years, male, NA, stage:3, alive, 750 days
21.2
DO50806
0 years, male, NA, stage:4, alive, 540 days
21.1
DO23508
0 years, female, NA, stage:2, alive, 390 days
21.0
DO45115
0 years, male, NA, stage:2, alive, 840 days
20.9
DO23541
0 years, male, NA, stage:2, alive, 930 days
20.9
DO23539
0 years, male, NA, stage:1, alive, 1110 days
20.8
DO23527
0 years, male, NA, stage:1, alive, 1050 days
20.8
DO45135
0 years, male, NA, stage:1, alive, 1410 days
20.7
DO50814
0 years, male, NA, stage:3, alive, 420 days
20.7
DO48677
0 years, male, NA, stage:3, alive, 1140 days
20.7
DO23538
0 years, male, NA, stage:2, alive, 450 days
20.6
DO45183
0 years, female, NA, stage:2, dead, 570 days
20.4
DO23515
0 years, male, NA, stage:2, alive, 1230 days
20.3
DO45095
0 years, male, NA, stage:2, alive, 1620 days
20.2
DO50774
0 years, female, NA, stage:2, alive, 720 days
20.2
DO45125
0 years, male, NA, stage:3, alive, 1680 days
20.1
DO45094
0 years, male, NA, stage:3, alive, 1650 days
20.0
DO45091
0 years, male, NA, stage:2, dead, 1320 days
20.0
DO23525
0 years, male, NA, stage:4, alive, 1050 days
19.9
DO45129
0 years, male, NA, stage:3, alive, 1470 days
19.9
DO48742
0 years, male, NA, stage:2, alive, 600 days
19.8
DO23545
0 years, male, NA, stage:2, dead, 570 days
19.6
DO45171
0 years, male, NA, stage:3, alive, 600 days
19.5
DO50783
0 years, male, NA, stage:3, alive, 480 days
19.5
DO45241
0 years, male, NA, stage:1, alive, 1080 days
19.4
DO23550
0 years, male, NA, stage:1, alive, 990 days
19.3
DO23531
0 years, female, NA, stage:3, alive, 900 days
19.3
DO45181
0 years, female, NA, stage:2, alive, 1200 days
19.2
DO45127
0 years, male, NA, stage:3, dead, 420 days
19.2
DO50789
0 years, female, NA, stage:2, alive, 570 days
19.1
DO45165
0 years, male, NA, stage:2, alive, 690 days
19.0
DO50825
0 years, male, NA, stage:2, alive, 390 days
18.9
DO45177
0 years, female, NA, stage:3, alive, 1260 days
18.9
DO50776
0 years, male, NA, stage:1, alive, 690 days
18.8
DO48719
0 years, male, NA, stage:2, alive, 690 days
18.7
DO50808
0 years, male, NA, stage:2, alive, 570 days
18.7
DO50805
0 years, male, NA, stage:2, alive, 690 days
18.7
DO45195
0 years, male, NA, stage:1, alive, 390 days
18.5
DO45169
0 years, male, NA, stage:3, alive, 1350 days
18.5
DO227801
0 years, female, NA, stage:1, alive, 660 days
18.4
DO48704
0 years, female, NA, stage:3, alive, 750 days
18.3
DO23530
0 years, male, NA, stage:4, dead, 180 days
18.3
DO45255
0 years, male, NA, stage:3, alive, 720 days
18.0
DO48693
0 years, male, NA, stage:2, alive, 900 days
18.0
DO48706
0 years, male, NA, stage:2, alive, 870 days
18.0
DO50785
0 years, male, NA, stage:4, dead, 90 days
17.9
DO50859
0 years, male, NA, stage:2, alive, 180 days
17.7
DO50822
0 years, male, NA, stage:2, alive, 510 days
17.4
DO50818
0 years, male, NA, stage:2, alive, 510 days
17.4
DO45096
0 years, male, NA, stage:2, dead, 1290 days
17.3
DO48721
0 years, female, NA, stage:1, alive, 900 days
17.3
DO23518
0 years, male, NA, stage:2, alive, 1320 days
17.2
DO48679
0 years, male, NA, stage:2, alive, 1200 days
17.1
DO45133
0 years, male, NA, stage:3, dead, 660 days
17.1
DO45097
0 years, male, NA, stage:3, alive, 1620 days
17.0
DO48681
0 years, male, NA, stage:2, alive, 900 days
16.7
DO45237
0 years, male, NA, stage:2, alive, 900 days
16.2
DO23551
0 years, male, NA, stage:3, dead, 150 days
16.1
DO23519
0 years, male, NA, stage:3, alive, 630 days
16.0
DO48715
0 years, female, NA, stage:2, dead, 690 days
16.0
DO48760
0 years, female, NA, stage:2, alive, 690 days
15.8
DO48741
0 years, male, NA, stage:3, alive, 240 days
14.7
DO45175
0 years, male, NA, stage:2, alive, 1140 days
14.5
DO48759
0 years, male, NA, stage:3, alive, 720 days
14.5
DO50839
0 years, female, NA, stage:3, alive, 330 days
14.4
DO45093
0 years, male, NA, stage:2, dead, 720 days
14.3
DO45109
0 years, male, NA, stage:2, alive, 1590 days
14.3
DO48674
0 years, male, NA, stage:2, alive, 1260 days
13.3
DO45261
0 years, male, NA, stage:3, alive, 990 days
12.8
DO48747
0 years, male, NA, stage:3, alive, 540 days
11.6
DO45285
0 years, male, NA, stage:3, alive, 480 days
11.0
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
123
Tumor
0.6
777
Tumor
0.5
1027
Tumor
0.5
977
Tumor
0.5
865
Tumor
0.5
1013
Tumor
0.4
965
Tumor
0.4
661
Tumor
0.4
477
Tumor
0.4
497
Tumor
0.4
983
Tumor
0.4
727
Tumor
0.4
695
Tumor
0.4
313
Tumor
0.4
131
Tumor
0.4
357
Tumor
0.4
921
Tumor
0.4
515
Tumor
0.3
537
Tumor
0.3
367
Tumor
0.3
1021
Tumor
0.3
873
Tumor
0.3
925
Tumor
0.3
957
Tumor
0.3
737
Tumor
0.3
545
Tumor
0.3
1015
Tumor
0.3
951
Tumor
0.3
355
Tumor
0.3
425
Tumor
0.3
487
Tumor
0.3
953
Tumor
0.3
443
Tumor
0.3
533
Tumor
0.3
411
Tumor
0.2
147
Tumor
0.2
817
Tumor
0.2
161
Tumor
0.2
461
Tumor
0.2
517
Tumor
0.2
851
Tumor
0.2
815
Tumor
0.2
685
Tumor
0.2
715
Tumor
0.2
883
Tumor
0.2
877
Tumor
0.2
743
Tumor
0.2
271
Tumor
0.2
112
Tumor
0.2
523
Tumor
0.2
473
Tumor
0.2
535
Tumor
0.2
861
Tumor
0.2
923
Tumor
0.2
491
Tumor
0.2
785
Tumor
0.2
471
Tumor
0.2
663
Tumor
0.2
724
Normal
0.2
527
Tumor
0.2
283
Tumor
0.2
1031
Tumor
0.2
911
Tumor
0.2
741
Tumor
0.2
943
Tumor
0.2
171
Tumor
0.2
298
Normal
0.2
113
Tumor
0.1
135
Tumor
0.1
412
Normal
0.1
554
Normal
0.1
427
Tumor
0.1
363
Tumor
0.1
451
Tumor
0.1
627
Tumor
0.1
493
Tumor
0.1
665
Tumor
0.1
1014
Normal
0.1
332
Normal
0.1
525
Tumor
0.1
455
Tumor
0.1
125
Tumor
0.1
513
Tumor
0.1
385
Tumor
0.1
647
Tumor
0.1
937
Tumor
0.1
981
Tumor
0.1
955
Tumor
0.1
563
Tumor
0.1
567
Tumor
0.1
557
Tumor
0.1
867
Tumor
0.1
746
Normal
0.1
465
Tumor
0.1
391
Tumor
0.1
484
Normal
0.1
534
Normal
0.1
823
Tumor
0.1
963
Tumor
0.1
314
Normal
0.1
423
Tumor
0.1
463
Tumor
0.1
433
Tumor
0.1
387
Tumor
0.1
483
Tumor
0.1
862
Normal
0.1
343
Tumor
0.1
824
Normal
0.1
277
Tumor
0.1
413
Tumor
0.1
331
Tumor
0.1
211
Tumor
0.1
745
Tumor
0.1
223
Tumor
0.1
127
Tumor
0.1
686
Normal
0.1
141
Tumor
0.1
375
Tumor
0.1
1025
Tumor
0.0
431
Tumor
0.0
436
Normal
0.0
448
Normal
0.0
1041
Tumor
0.0
721
Tumor
0.0
553
Tumor
0.0
185
Tumor
0.0
913
Tumor
0.0
975
Tumor
0.0
327
Tumor
0.0
137
Tumor
0.0
128
Normal
0.0
778
Normal
0.0
744
Normal
0.0
636
Normal
0.0
882
Normal
0.0
635
Tumor
0.0
616
Normal
0.0
421
Tumor
0.0
494
Normal
0.0
738
Normal
0.0
285
Tumor
0.0
488
Normal
0.0
671
Tumor
0.0
312
Normal
0.0
434
Normal
0.0
698
Normal
0.0
755
Tumor
0.0
278
Normal
0.0
227
Tumor
0.0
642
Normal
0.0
813
Tumor
0.0
915
Tumor
0.0
878
Normal
0.0
267
Tumor
0.0
617
Tumor
0.0
212
Normal
0.0
618
Normal
0.0
415
Tumor
0.0
546
Normal
0.0
516
Normal
0.0
228
Normal
0.0
435
Tumor
0.0
257
Tumor
0.0
467
Tumor
0.0
447
Tumor
0.0
464
Normal
0.0
982
Normal
0.0
967
Tumor
0.0
866
Normal
0.0
286
Normal
0.0
648
Normal
0.0
142
Normal
0.0
462
Normal
0.0
528
Normal
0.0
881
Tumor
0.0
524
Normal
0.0
628
Normal
0.0
964
Normal
0.0
518
Normal
0.0
162
Normal
0.0
492
Normal
0.0
383
Tumor
0.0
728
Normal
0.0
358
Normal
0.0
365
Tumor
0.0
456
Normal
0.0
428
Normal
0.0
356
Normal
0.0
114
Normal
0.0
816
Normal
0.0
713
Tumor
0.0
446
Normal
0.0
342
Normal
-0.1
1028
Normal
-0.1
742
Normal
-0.1
922
Normal
-0.1
641
Tumor
-0.1
1043
Tumor
-0.1
1026
Normal
-0.1
538
Normal
-0.1
874
Normal
-0.1
124
Normal
-0.1
426
Normal
-0.1
944
Normal
-0.1
864
Normal
-0.1
466
Normal
-0.1
664
Normal
-0.1
666
Normal
-0.1
858
Normal
-0.1
1045
Tumor
-0.1
723
Tumor
-0.1
392
Normal
-0.1
351
Tumor
-0.1
514
Normal
-0.1
474
Normal
-0.1
868
Normal
-0.1
261
Tumor
-0.1
714
Normal
-0.1
482
Normal
-0.1
615
Tumor
-0.1
297
Tumor
-0.1
956
Normal
-0.1
111
Normal
-0.1
422
Normal
-0.1
498
Normal
-0.1
445
Tumor
-0.1
564
Normal
-0.1
952
Normal
-0.1
966
Normal
-0.1
376
Normal
-0.1
917
Tumor
-0.1
353
Tumor
-0.1
914
Normal
-0.1
756
Normal
-0.1
924
Normal
-0.1
857
Tumor
-0.1
536
Normal
-0.1
1016
Normal
-0.1
224
Normal
-0.1
696
Normal
-0.1
148
Normal
-0.1
424
Normal
-0.1
187
Tumor
-0.1
432
Normal
-0.1
926
Normal
-0.1
364
Normal
-0.1
258
Normal
-0.1
452
Normal
-0.1
697
Tumor
-0.1
196
Normal
-0.1
558
Normal
-0.1
572
Normal
-0.1
814
Normal
-0.1
571
Tumor
-0.1
1032
Normal
-0.1
526
Normal
-0.1
284
Normal
-0.1
716
Normal
-0.1
662
Normal
-0.1
938
Normal
-0.1
568
Normal
-0.1
217
Tumor
-0.1
918
Normal
-0.1
213
Tumor
-0.1
818
Normal
-0.2
218
Normal
-0.2
573
Tumor
-0.2
186
Normal
-0.2
786
Normal
-0.2
344
Normal
-0.2
172
Normal
-0.2
221
Tumor
-0.2
672
Normal
-0.2
414
Normal
-0.2
481
Tumor
-0.2
912
Normal
-0.2
328
Normal
-0.2
863
Tumor
-0.2
138
Normal
-0.2
444
Normal
-0.2
341
Tumor
-0.2
396
Normal
-0.2
354
Normal
-0.2
1046
Normal
-0.2
145
Tumor
-0.2
1022
Normal
-0.2
976
Normal
-0.2
361
Tumor
-0.2
262
Normal
-0.2
136
Normal
-0.2
468
Normal
-0.2
395
Tumor
-0.2
416
Normal
-0.2
214
Normal
-0.2
386
Normal
-0.2
472
Normal
-0.2
231
Tumor
-0.2
311
Tumor
-0.2
388
Normal
-0.2
362
Normal
-0.2
984
Normal
-0.2
272
Normal
-0.2
954
Normal
-0.2
146
Normal
-0.2
352
Normal
-0.2
222
Normal
-0.2
126
Normal
-0.2
393
Tumor
-0.2
478
Normal
-0.2
132
Normal
-0.2
916
Normal
-0.2
722
Normal
-0.3
232
Normal
-0.3
968
Normal
-0.3
366
Normal
-0.3
852
Normal
-0.3
1044
Normal
-0.3
574
Normal
-0.3
958
Normal
-0.3
394
Normal
-0.3
1042
Normal
-0.3
978
Normal
-0.3
884
Normal
-0.3
268
Normal
-0.3
188
Normal
-0.3
192
Normal
-0.3
384
Normal
-0.4
368
Normal
-0.4
191
Tumor
-0.4
195
Tumor
-0.5
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
