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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
TNKS1BP1 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
18.2
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
102.1
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
74.0
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
69.1
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
66.4
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
60.0
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
56.4
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
50.3
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
48.8
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
47.6
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
47.3
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
47.0
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
46.5
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
44.9
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
44.2
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
44.0
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
43.2
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
40.2
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
40.2
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
38.8
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
38.7
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
38.0
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
37.9
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
37.5
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
37.4
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
37.4
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
37.2
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
37.2
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
37.1
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
36.8
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
35.8
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
35.7
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
35.0
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
34.8
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
34.8
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
33.9
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
33.8
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
33.6
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
33.6
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
33.4
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
33.0
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
33.0
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
32.6
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
32.5
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
32.3
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
32.2
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
32.2
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
32.0
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
31.9
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
31.5
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
31.3
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
31.2
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
31.0
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
30.6
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
30.2
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
30.1
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
29.8
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
29.7
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
29.4
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
29.2
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
28.7
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
28.0
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
28.0
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
27.7
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
27.6
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
27.4
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
27.2
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
27.0
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
26.9
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
26.6
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
26.5
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
26.4
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
26.4
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
26.2
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
26.1
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
26.1
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
26.0
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
26.0
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
25.9
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
25.9
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
25.7
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
25.6
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
25.6
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
25.5
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
25.3
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
25.2
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
25.1
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
25.1
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
25.1
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
24.9
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
24.8
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
24.7
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
24.7
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
24.6
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
24.6
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
24.5
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
24.4
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
24.3
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
24.3
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
24.1
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
24.0
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
23.8
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
23.8
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
23.8
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
23.3
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
23.3
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
23.2
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
23.2
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
23.0
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
23.0
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
22.9
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
22.8
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
22.8
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
22.6
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
22.6
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
22.3
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
22.3
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
22.0
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
21.8
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
21.6
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
21.5
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
21.4
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
21.2
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
21.1
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
21.1
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
21.0
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
21.0
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
20.9
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
20.9
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
20.9
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
20.8
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
20.8
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
20.8
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
20.6
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
20.4
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
20.3
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
20.3
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
20.3
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
20.2
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
20.1
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
20.1
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
20.0
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
20.0
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
19.9
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
19.8
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
19.7
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
19.6
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
19.5
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
19.5
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
19.5
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
19.4
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
19.1
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
19.0
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
18.9
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
18.8
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
18.8
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
18.8
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
18.4
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
18.4
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
18.3
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
18.2
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
18.2
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
18.2
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
18.1
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
18.1
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
18.0
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
18.0
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
17.9
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
17.7
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
17.7
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
17.5
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
17.5
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
17.5
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
17.5
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
17.3
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
17.3
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
17.3
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
17.1
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
16.9
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
16.8
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
16.8
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
16.6
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
16.5
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
16.5
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
16.4
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
16.0
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
16.0
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
16.0
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
16.0
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
15.9
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
15.9
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
15.8
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
15.7
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
15.5
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
15.5
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
15.2
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
15.2
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
15.2
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
15.1
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
15.0
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
14.9
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
14.9
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
14.8
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
14.8
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
14.5
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
14.4
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
14.4
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
14.4
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
14.4
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
14.3
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
14.1
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
14.0
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
13.8
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
13.8
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
13.7
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
13.6
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
13.5
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
13.5
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
13.5
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
13.4
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
13.4
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
13.3
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
13.2
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
13.1
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
13.1
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
12.8
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
12.7
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
12.6
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
12.6
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
12.5
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
12.3
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
12.2
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
12.2
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
12.0
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
11.9
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
11.9
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
11.9
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
11.8
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
11.8
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
11.8
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
11.6
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
11.5
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
11.3
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
11.3
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
11.2
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
11.2
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
11.2
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
11.1
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
11.1
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
11.1
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
10.9
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
10.9
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
10.8
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
10.7
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
10.7
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
10.7
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
10.6
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
10.5
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
10.5
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
10.5
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
10.5
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
10.3
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
10.3
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
10.2
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
10.0
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
9.8
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
9.8
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
9.7
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
9.7
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
9.6
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
9.5
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
9.4
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
9.3
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
9.1
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
9.1
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
8.8
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
8.8
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
8.7
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
8.6
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
8.6
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
8.5
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
8.5
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
8.4
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
8.2
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
7.9
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
7.6
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
7.6
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
7.5
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
7.4
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
7.3
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
7.3
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
7.1
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
7.1
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
7.1
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
7.1
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
7.0
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
6.9
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
6.5
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
6.3
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
6.1
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
6.0
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
5.9
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
5.9
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
5.8
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
5.7
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
5.6
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
5.5
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
5.5
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
5.4
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
5.3
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
5.3
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
5.2
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
5.2
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
5.2
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
5.1
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
5.1
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
5.0
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
5.0
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
5.0
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
4.9
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
4.8
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
4.8
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
4.7
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
4.5
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
4.4
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
4.3
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
4.2
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
4.2
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
4.2
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
4.2
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
4.1
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
3.8
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
3.7
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
3.5
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
3.4
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
3.1
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
2.9
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
2.6
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
2.6
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
2.6
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
2.5
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
2.5
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
2.1
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
2.0
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
1.9
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
1.9
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
1.8
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
1.8
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
1.8
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
1.6
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
1.6
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
1.6
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
1.5
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
1.0
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
1.0
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
1.0
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
0.7
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
0.7
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
0.6
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
0.5
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
0.3
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
0.3
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
TNKS1BP1 is potential prognostic, high expression is favorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
17.9
Number of samples
231
Samples
Sample
Description
TPM
DO48732
0 years, male, NA, stage:3, alive, 630 days
67.6
DO45211
0 years, male, NA, stage:3, alive, 240 days
47.3
DO45305
0 years, male, NA, stage:4, alive, 300 days
46.4
DO45303
0 years, female, NA, stage:3, alive, 990 days
45.8
DO45279
0 years, male, NA, stage:3, alive, 1290 days
45.4
DO45249
0 years, male, NA, stage:1, alive, 630 days
43.8
DO48743
0 years, female, NA, stage:2, alive, 570 days
43.0
DO23532
0 years, female, NA, stage:1, alive, 960 days
43.0
DO23544
0 years, male, NA, stage:2, alive, 960 days
37.2
DO45219
0 years, male, NA, stage:2, alive, 1080 days
35.9
DO45245
0 years, female, NA, stage:2, dead, 240 days
35.5
DO45275
0 years, male, NA, stage:3, dead, 10 days
32.8
DO48737
0 years, male, NA, stage:1, alive, 720 days
32.7
DO45289
0 years, female, NA, stage:3, alive, 360 days
31.9
DO23546
0 years, male, NA, stage:2, alive, 1050 days
30.8
DO50832
0 years, male, NA, stage:3, alive, 90 days
30.6
DO45297
0 years, female, NA, stage:4, dead, 1260 days
29.3
DO50839
0 years, female, NA, stage:3, alive, 330 days
29.1
DO45205
0 years, female, NA, stage:2, dead, 90 days
28.4
DO23529
0 years, male, NA, stage:4, alive, 930 days
28.3
DO45217
0 years, female, NA, stage:3, dead, 270 days
28.3
DO23513
0 years, male, NA, stage:3, alive, 1200 days
28.1
DO45207
0 years, male, NA, stage:1, alive, 1050 days
28.0
DO45227
0 years, female, NA, stage:2, alive, 1020 days
27.7
DO50819
0 years, female, NA, stage:2, alive, 510 days
27.5
DO45301
0 years, male, NA, stage:2, dead, 1440 days
27.1
DO23540
0 years, male, NA, stage:1, alive, 750 days
27.0
DO48719
0 years, male, NA, stage:2, alive, 690 days
26.4
DO50850
0 years, male, NA, stage:3, alive, 720 days
26.2
DO23534
0 years, male, NA, stage:2, alive, 840 days
26.2
DO45155
0 years, male, NA, stage:2, alive, 2160 days
26.0
DO45215
0 years, male, NA, stage:2, alive, 1170 days
25.8
DO45157
0 years, male, NA, stage:2, alive, 1980 days
25.6
DO45195
0 years, male, NA, stage:1, alive, 390 days
25.4
DO50802
0 years, male, NA, stage:2, alive, 930 days
25.4
DO45243
0 years, female, NA, stage:3, alive, 930 days
25.4
DO45265
0 years, male, NA, stage:3, alive, 1020 days
25.0
DO50800
0 years, male, NA, stage:2, alive, 510 days
24.2
DO48757
0 years, female, NA, stage:3, alive, 480 days
23.7
DO23539
0 years, male, NA, stage:1, alive, 1110 days
23.6
DO48725
0 years, male, NA, stage:1, alive, 780 days
23.5
DO45131
0 years, male, NA, stage:4, dead, 360 days
23.2
DO23512
0 years, male, NA, stage:1, alive, 1260 days
22.7
DO45231
0 years, male, NA, stage:2, alive, 930 days
22.7
DO45251
0 years, female, NA, stage:2, alive, 900 days
22.6
DO45113
0 years, male, NA, stage:3, alive, 1560 days
22.6
DO50829
0 years, male, NA, stage:3, alive, 570 days
22.5
DO48723
0 years, male, NA, stage:1, alive, 600 days
22.5
DO45307
0 years, female, NA, stage:4, dead, 240 days
22.4
DO23524
0 years, female, NA, stage:2, alive, 1050 days
22.2
DO50844
0 years, male, NA, stage:4, alive, 300 days
22.1
DO50789
0 years, female, NA, stage:2, alive, 570 days
21.8
DO45139
0 years, male, NA, stage:3, alive, 1320 days
21.6
DO45092
0 years, male, NA, stage:4, dead, 1200 days
21.6
DO45185
0 years, male, NA, stage:2, alive, 600 days
21.5
DO45115
0 years, male, NA, stage:2, alive, 840 days
21.4
DO45181
0 years, female, NA, stage:2, alive, 1200 days
21.4
DO45121
0 years, male, NA, stage:3, alive, 1530 days
21.4
DO45137
0 years, male, NA, stage:1, alive, 1320 days
21.4
DO50799
0 years, female, NA, stage:2, alive, 540 days
21.2
DO45153
0 years, female, NA, stage:2, alive, 1380 days
21.2
DO45189
0 years, female, NA, stage:2, alive, 1200 days
21.1
DO45221
0 years, female, NA, stage:4, dead, 390 days
21.1
DO45281
0 years, male, NA, stage:4, alive, 750 days
21.0
DO45233
0 years, male, NA, stage:3, alive, 900 days
21.0
DO23537
0 years, male, NA, stage:2, dead, 900 days
21.0
DO48717
0 years, male, NA, stage:4, dead, 180 days
20.8
DO48712
0 years, male, NA, stage:2, alive, 810 days
20.8
DO50845
0 years, male, NA, stage:3, alive, 210 days
20.7
DO45111
0 years, male, NA, stage:2, alive, 1590 days
20.7
DO23536
0 years, male, NA, stage:2, alive, 930 days
20.6
DO23510
0 years, female, NA, stage:2, alive, 870 days
20.5
DO45273
0 years, male, NA, stage:2, alive, 480 days
20.3
DO48761
0 years, male, NA, stage:2, alive, 870 days
20.3
DO45277
0 years, male, NA, stage:3, alive, 600 days
20.0
DO50811
0 years, male, NA, stage:1, alive, 450 days
19.9
DO23530
0 years, male, NA, stage:4, dead, 180 days
19.8
DO48672
0 years, male, NA, stage:2, alive, 450 days
19.7
DO48715
0 years, female, NA, stage:2, dead, 690 days
19.7
DO50818
0 years, male, NA, stage:2, alive, 510 days
19.6
DO48679
0 years, male, NA, stage:2, alive, 1200 days
19.5
DO50787
0 years, male, NA, stage:3, alive, 480 days
19.4
DO48736
0 years, female, NA, stage:1, alive, 600 days
19.3
DO45285
0 years, male, NA, stage:3, alive, 480 days
19.2
DO45105
0 years, male, NA, stage:1, alive, 1680 days
19.2
DO45283
0 years, male, NA, stage:3, alive, 510 days
19.1
DO45191
0 years, female, NA, stage:2, alive, 1200 days
18.9
DO23527
0 years, male, NA, stage:1, alive, 1050 days
18.4
DO45165
0 years, male, NA, stage:2, alive, 690 days
18.4
DO45213
0 years, male, NA, stage:1, alive, 1200 days
18.4
DO48700
0 years, female, NA, stage:2, alive, 810 days
18.3
DO50808
0 years, male, NA, stage:2, alive, 570 days
18.3
DO23526
0 years, male, NA, stage:3, alive, 1050 days
18.0
DO23515
0 years, male, NA, stage:2, alive, 1230 days
17.9
DO50840
0 years, male, NA, stage:2, alive, 330 days
17.9
DO45107
0 years, female, NA, stage:2, alive, 1710 days
17.7
DO23535
0 years, male, NA, stage:1, alive, 960 days
17.7
DO48693
0 years, male, NA, stage:2, alive, 900 days
17.7
DO48677
0 years, male, NA, stage:3, alive, 1140 days
17.7
DO45125
0 years, male, NA, stage:3, alive, 1680 days
17.6
DO48695
0 years, male, NA, stage:2, alive, 720 days
17.5
DO45159
0 years, male, NA, stage:3, alive, 1470 days
17.3
DO50816
0 years, male, NA, stage:2, alive, 390 days
17.3
DO45179
0 years, female, NA, stage:2, alive, 600 days
17.2
DO23518
0 years, male, NA, stage:2, alive, 1320 days
17.2
DO48760
0 years, female, NA, stage:2, alive, 690 days
17.2
DO45255
0 years, male, NA, stage:3, alive, 720 days
17.2
DO23514
0 years, male, NA, stage:2, alive, 1290 days
17.2
DO45129
0 years, male, NA, stage:3, alive, 1470 days
17.2
DO23511
0 years, female, NA, stage:3, dead, 180 days
17.1
DO48742
0 years, male, NA, stage:2, alive, 600 days
17.1
DO50783
0 years, male, NA, stage:3, alive, 480 days
17.1
DO50807
0 years, male, NA, stage:1, alive, 540 days
17.1
DO50825
0 years, male, NA, stage:2, alive, 390 days
16.9
DO50820
0 years, female, NA, stage:3, alive, 510 days
16.9
DO45095
0 years, male, NA, stage:2, alive, 1620 days
16.5
DO45203
0 years, female, NA, stage:2, alive, 1170 days
16.5
DO23517
0 years, male, NA, stage:2, alive, 1200 days
16.5
DO23551
0 years, male, NA, stage:3, dead, 150 days
16.5
DO50793
0 years, male, NA, stage:4, alive, 540 days
16.3
DO45167
0 years, male, NA, stage:2, dead, 1440 days
16.3
DO50806
0 years, male, NA, stage:4, alive, 540 days
16.2
DO23547
0 years, male, NA, stage:1, alive, 1020 days
16.2
DO45101
0 years, male, NA, stage:2, alive, 1680 days
16.0
DO48697
0 years, female, NA, stage:2, dead, 810 days
16.0
DO45253
0 years, male, NA, stage:2, alive, 870 days
16.0
DO45259
0 years, male, NA, stage:3, alive, 330 days
15.9
DO23552
0 years, female, NA, stage:1, alive, 810 days
15.9
DO45173
0 years, male, NA, stage:3, alive, 1170 days
15.8
DO48747
0 years, male, NA, stage:3, alive, 540 days
15.8
DO45263
0 years, male, NA, stage:3, dead, 270 days
15.8
DO23542
0 years, male, NA, stage:3, alive, 960 days
15.7
DO50855
0 years, male, NA, stage:2, alive, 570 days
15.7
DO23508
0 years, female, NA, stage:2, alive, 390 days
15.3
DO45103
0 years, male, NA, stage:3, alive, 450 days
15.3
DO48727
0 years, female, NA, stage:2, dead, 390 days
15.3
DO45237
0 years, male, NA, stage:2, alive, 900 days
15.2
DO48720
0 years, female, NA, stage:2, alive, 570 days
14.8
DO48733
0 years, male, NA, stage:2, alive, 600 days
14.7
DO45235
0 years, female, NA, stage:1, alive, 900 days
14.6
DO50813
0 years, male, NA, stage:2, alive, 420 days
14.6
DO50776
0 years, male, NA, stage:1, alive, 690 days
14.6
DO45267
0 years, male, NA, stage:3, dead, 570 days
14.5
DO45225
0 years, male, NA, stage:1, alive, 1050 days
14.5
DO48728
0 years, female, NA, stage:2, alive, 150 days
14.5
DO23531
0 years, female, NA, stage:3, alive, 900 days
14.4
DO45161
0 years, male, NA, stage:2, dead, 540 days
14.3
DO50817
0 years, male, NA, stage:2, alive, 390 days
14.3
DO45094
0 years, male, NA, stage:3, alive, 1650 days
14.3
DO48716
0 years, male, NA, stage:2, alive, 720 days
14.3
DO48730
0 years, female, NA, stage:2, alive, 630 days
14.2
DO45223
0 years, male, NA, stage:4, alive, 1020 days
14.2
DO50803
0 years, female, NA, stage:1, alive, 540 days
14.1
DO45247
0 years, female, NA, stage:2, alive, 210 days
14.0
DO50791
0 years, female, NA, stage:1, dead, 480 days
13.9
DO50804
0 years, male, NA, stage:2, alive, 720 days
13.9
DO50822
0 years, male, NA, stage:2, alive, 510 days
13.8
DO50805
0 years, male, NA, stage:2, alive, 690 days
13.8
DO48706
0 years, male, NA, stage:2, alive, 870 days
13.7
DO45177
0 years, female, NA, stage:3, alive, 1260 days
13.5
DO45109
0 years, male, NA, stage:2, alive, 1590 days
13.5
DO50774
0 years, female, NA, stage:2, alive, 720 days
13.5
DO48701
0 years, male, NA, stage:2, alive, 780 days
13.2
DO45197
0 years, male, NA, stage:2, alive, 1170 days
13.2
DO227801
0 years, female, NA, stage:1, alive, 660 days
13.1
DO45257
0 years, male, NA, stage:3, alive, 810 days
13.1
DO45171
0 years, male, NA, stage:3, alive, 600 days
13.0
DO23541
0 years, male, NA, stage:2, alive, 930 days
12.9
DO45209
0 years, male, NA, stage:4, alive, 1350 days
12.9
DO45193
0 years, female, NA, stage:4, dead, 120 days
12.9
DO45229
0 years, male, NA, stage:1, alive, 990 days
12.7
DO23548
0 years, female, NA, stage:1, alive, 840 days
12.5
DO45261
0 years, male, NA, stage:3, alive, 990 days
12.5
DO45099
0 years, male, NA, stage:3, alive, 1590 days
12.5
DO45269
0 years, male, NA, stage:3, alive, 750 days
12.3
DO45135
0 years, male, NA, stage:1, alive, 1410 days
12.3
DO50778
0 years, male, NA, stage:4, alive, 630 days
12.2
DO48759
0 years, male, NA, stage:3, alive, 720 days
12.2
DO23523
0 years, male, NA, stage:3, alive, 1080 days
11.9
DO45187
0 years, female, NA, stage:1, alive, 1260 days
11.9
DO45241
0 years, male, NA, stage:1, alive, 1080 days
11.9
DO23550
0 years, male, NA, stage:1, alive, 990 days
11.9
DO50815
0 years, male, NA, stage:3, alive, 150 days
11.6
DO23543
0 years, male, NA, stage:2, alive, 1020 days
11.5
DO48682
0 years, female, NA, stage:3, dead, 120 days
11.5
DO45143
0 years, male, NA, stage:3, alive, 1290 days
11.4
DO45287
0 years, male, NA, stage:1, alive, 390 days
11.3
DO45149
0 years, female, NA, stage:2, alive, 1260 days
11.1
DO50857
0 years, male, NA, stage:2, alive, 210 days
11.1
DO50809
0 years, male, NA, stage:3, dead, 720 days
11.0
DO48681
0 years, male, NA, stage:2, alive, 900 days
10.9
DO23525
0 years, male, NA, stage:4, alive, 1050 days
10.9
DO50798
0 years, male, NA, stage:3, dead, 30 days
10.8
DO23538
0 years, male, NA, stage:2, alive, 450 days
10.7
DO23528
0 years, female, NA, stage:2, alive, 1020 days
10.7
DO23521
0 years, male, NA, stage:3, alive, 1110 days
10.7
DO23533
0 years, male, NA, stage:2, alive, 900 days
10.5
DO45141
0 years, male, NA, stage:2, alive, 1320 days
10.5
DO227643
0 years, male, NA, stage:2, alive, 1260 days
10.0
DO45133
0 years, male, NA, stage:3, dead, 660 days
9.9
DO45163
0 years, male, NA, stage:2, alive, 960 days
9.9
DO48674
0 years, male, NA, stage:2, alive, 1260 days
9.8
DO45169
0 years, male, NA, stage:3, alive, 1350 days
9.4
DO45097
0 years, male, NA, stage:3, alive, 1620 days
9.4
DO45199
0 years, female, NA, stage:2, alive, 1350 days
9.4
DO45119
0 years, male, NA, stage:3, dead, 510 days
9.2
DO45201
0 years, male, NA, stage:1, alive, 900 days
9.1
DO48751
0 years, male, NA, stage:2, dead, 480 days
8.9
DO50859
0 years, male, NA, stage:2, alive, 180 days
8.6
DO48746
0 years, male, NA, stage:3, alive, 570 days
8.5
DO45093
0 years, male, NA, stage:2, dead, 720 days
8.4
DO45183
0 years, female, NA, stage:2, dead, 570 days
8.4
DO45127
0 years, male, NA, stage:3, dead, 420 days
8.4
DO23519
0 years, male, NA, stage:3, alive, 630 days
8.4
DO48704
0 years, female, NA, stage:3, alive, 750 days
8.4
DO50785
0 years, male, NA, stage:4, dead, 90 days
8.1
DO45123
0 years, female, NA, stage:2, dead, 570 days
8.1
DO45096
0 years, male, NA, stage:2, dead, 1290 days
8.0
DO23545
0 years, male, NA, stage:2, dead, 570 days
7.6
DO23509
0 years, male, NA, stage:3, dead, 780 days
7.2
DO23516
0 years, male, NA, stage:3, dead, 20 days
7.0
DO50814
0 years, male, NA, stage:3, alive, 420 days
6.9
DO45299
0 years, female, NA, stage:1, alive, 1440 days
6.6
DO45091
0 years, male, NA, stage:2, dead, 1320 days
6.6
DO45175
0 years, male, NA, stage:2, alive, 1140 days
6.5
DO48721
0 years, female, NA, stage:1, alive, 900 days
6.0
DO45239
0 years, male, NA, stage:2, alive, 870 days
5.5
DO23549
0 years, male, NA, stage:3, alive, 990 days
5.5
DO45117
0 years, female, NA, stage:2, dead, 1110 days
5.5
DO48741
0 years, male, NA, stage:3, alive, 240 days
3.6
DO45145
0 years, male, NA, stage:3, dead, 60 days
2.3
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
477
Tumor
1.0
911
Tumor
0.9
745
Tumor
0.7
484
Normal
0.6
981
Tumor
0.6
465
Tumor
0.6
955
Tumor
0.6
487
Tumor
0.6
937
Tumor
0.5
824
Normal
0.5
554
Normal
0.5
1028
Normal
0.5
696
Normal
0.5
746
Normal
0.5
171
Tumor
0.5
714
Normal
0.5
1022
Normal
0.5
878
Normal
0.5
982
Normal
0.5
952
Normal
0.5
327
Tumor
0.4
286
Normal
0.4
452
Normal
0.4
918
Normal
0.4
737
Tumor
0.4
518
Normal
0.4
786
Normal
0.4
778
Normal
0.4
926
Normal
0.4
416
Normal
0.4
482
Normal
0.4
568
Normal
0.4
742
Normal
0.4
852
Normal
0.4
866
Normal
0.4
958
Normal
0.4
474
Normal
0.4
1025
Tumor
0.4
968
Normal
0.4
392
Normal
0.4
868
Normal
0.4
964
Normal
0.4
884
Normal
0.4
628
Normal
0.4
944
Normal
0.4
218
Normal
0.4
125
Tumor
0.4
137
Tumor
0.4
858
Normal
0.4
1046
Normal
0.4
862
Normal
0.4
647
Tumor
0.4
723
Tumor
0.4
874
Normal
0.4
415
Tumor
0.4
533
Tumor
0.4
498
Normal
0.4
1014
Normal
0.4
616
Normal
0.4
922
Normal
0.4
546
Normal
0.4
526
Normal
0.4
528
Normal
0.4
488
Normal
0.4
341
Tumor
0.4
258
Normal
0.4
448
Normal
0.4
916
Normal
0.4
627
Tumor
0.4
257
Tumor
0.3
481
Tumor
0.3
816
Normal
0.3
396
Normal
0.3
483
Tumor
0.3
1043
Tumor
0.3
1016
Normal
0.3
984
Normal
0.3
913
Tumor
0.3
572
Normal
0.3
642
Normal
0.3
472
Normal
0.3
924
Normal
0.3
558
Normal
0.3
698
Normal
0.3
298
Normal
0.3
728
Normal
0.3
284
Normal
0.3
436
Normal
0.3
978
Normal
0.3
364
Normal
0.3
636
Normal
0.3
462
Normal
0.3
756
Normal
0.3
574
Normal
0.3
938
Normal
0.3
365
Tumor
0.3
966
Normal
0.3
662
Normal
0.3
1026
Normal
0.3
222
Normal
0.3
716
Normal
0.3
412
Normal
0.3
954
Normal
0.3
494
Normal
0.3
538
Normal
0.3
312
Normal
0.3
1032
Normal
0.3
123
Tumor
0.3
362
Normal
0.3
527
Tumor
0.3
426
Normal
0.3
727
Tumor
0.3
514
Normal
0.3
425
Tumor
0.3
738
Normal
0.3
648
Normal
0.3
1041
Tumor
0.3
864
Normal
0.3
136
Normal
0.3
912
Normal
0.3
915
Tumor
0.3
618
Normal
0.3
492
Normal
0.3
516
Normal
0.3
228
Normal
0.3
147
Tumor
0.3
132
Normal
0.3
386
Normal
0.3
435
Tumor
0.3
755
Tumor
0.3
777
Tumor
0.3
1044
Normal
0.3
534
Normal
0.3
563
Tumor
0.3
422
Normal
0.3
664
Normal
0.3
686
Normal
0.2
921
Tumor
0.2
444
Normal
0.2
615
Tumor
0.2
536
Normal
0.2
914
Normal
0.2
478
Normal
0.2
446
Normal
0.2
1015
Tumor
0.2
366
Normal
0.2
278
Normal
0.2
268
Normal
0.2
111
Normal
0.2
376
Normal
0.2
456
Normal
0.2
545
Tumor
0.2
943
Tumor
0.2
956
Normal
0.2
461
Tumor
0.2
976
Normal
0.2
882
Normal
0.2
818
Normal
0.2
715
Tumor
0.2
428
Normal
0.2
744
Normal
0.2
414
Normal
0.2
977
Tumor
0.2
468
Normal
0.2
272
Normal
0.2
666
Normal
0.2
212
Normal
0.2
464
Normal
0.2
232
Normal
0.2
353
Tumor
0.2
124
Normal
0.2
564
Normal
0.2
1045
Tumor
0.2
114
Normal
0.2
617
Tumor
0.2
1027
Tumor
0.2
867
Tumor
0.2
148
Normal
0.2
513
Tumor
0.2
126
Normal
0.2
424
Normal
0.2
466
Normal
0.2
368
Normal
0.2
463
Tumor
0.2
1042
Normal
0.2
741
Tumor
0.2
356
Normal
0.2
432
Normal
0.2
354
Normal
0.2
394
Normal
0.1
524
Normal
0.1
695
Tumor
0.1
358
Normal
0.1
138
Normal
0.1
388
Normal
0.1
221
Tumor
0.1
162
Normal
0.1
1013
Tumor
0.1
722
Normal
0.1
196
Normal
0.1
262
Normal
0.1
451
Tumor
0.1
214
Normal
0.1
861
Tumor
0.1
857
Tumor
0.1
131
Tumor
0.1
172
Normal
0.1
192
Normal
0.1
224
Normal
0.1
447
Tumor
0.1
344
Normal
0.1
471
Tumor
0.1
672
Normal
0.1
195
Tumor
0.1
142
Normal
0.1
925
Tumor
0.1
328
Normal
0.1
923
Tumor
0.0
387
Tumor
0.0
384
Normal
0.0
817
Tumor
0.0
361
Tumor
0.0
352
Normal
0.0
188
Normal
0.0
421
Tumor
0.0
553
Tumor
0.0
917
Tumor
0.0
965
Tumor
0.0
128
Normal
0.0
665
Tumor
0.0
721
Tumor
0.0
443
Tumor
0.0
191
Tumor
0.0
953
Tumor
0.0
314
Normal
0.0
975
Tumor
0.0
211
Tumor
0.0
127
Tumor
0.0
146
Normal
0.0
515
Tumor
0.0
186
Normal
0.0
635
Tumor
0.0
423
Tumor
0.0
112
Tumor
0.0
537
Tumor
0.0
342
Normal
0.0
951
Tumor
0.0
493
Tumor
0.0
434
Normal
-0.1
641
Tumor
-0.1
557
Tumor
-0.1
141
Tumor
-0.1
261
Tumor
-0.1
161
Tumor
-0.1
433
Tumor
-0.1
517
Tumor
-0.1
957
Tumor
-0.1
363
Tumor
-0.1
873
Tumor
-0.1
881
Tumor
-0.1
217
Tumor
-0.1
455
Tumor
-0.1
283
Tumor
-0.1
785
Tumor
-0.1
145
Tumor
-0.1
491
Tumor
-0.1
1021
Tumor
-0.1
332
Normal
-0.1
865
Tumor
-0.1
823
Tumor
-0.1
411
Tumor
-0.1
313
Tumor
-0.2
427
Tumor
-0.2
267
Tumor
-0.2
271
Tumor
-0.2
814
Normal
-0.2
1031
Tumor
-0.2
671
Tumor
-0.2
663
Tumor
-0.2
331
Tumor
-0.2
525
Tumor
-0.2
113
Tumor
-0.2
963
Tumor
-0.2
813
Tumor
-0.2
185
Tumor
-0.2
393
Tumor
-0.2
535
Tumor
-0.2
863
Tumor
-0.2
223
Tumor
-0.2
297
Tumor
-0.2
277
Tumor
-0.3
285
Tumor
-0.3
713
Tumor
-0.3
383
Tumor
-0.3
355
Tumor
-0.3
231
Tumor
-0.3
187
Tumor
-0.3
697
Tumor
-0.3
523
Tumor
-0.3
467
Tumor
-0.4
497
Tumor
-0.4
877
Tumor
-0.4
385
Tumor
-0.4
445
Tumor
-0.4
967
Tumor
-0.4
431
Tumor
-0.4
375
Tumor
-0.4
343
Tumor
-0.4
883
Tumor
-0.5
983
Tumor
-0.5
213
Tumor
-0.5
395
Tumor
-0.5
311
Tumor
-0.5
573
Tumor
-0.5
135
Tumor
-0.5
685
Tumor
-0.5
473
Tumor
-0.6
367
Tumor
-0.6
851
Tumor
-0.6
567
Tumor
-0.6
743
Tumor
-0.6
391
Tumor
-0.6
227
Tumor
-0.7
357
Tumor
-0.7
571
Tumor
-0.8
661
Tumor
-0.9
413
Tumor
-1.0
351
Tumor
-1.0
724
Normal
-1.1
815
Tumor
-1.3
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.