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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SAA4 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
430.7
Number of samples
362
Samples
Sample
Description
TPM
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
2391.9
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
2080.9
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
1755.1
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
1742.2
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
1729.3
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
1726.6
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
1698.7
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
1678.5
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
1647.1
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
1628.4
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
1560.3
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
1503.6
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
1473.7
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
1407.5
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
1382.0
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
1353.1
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
1330.6
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
1327.4
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
1303.2
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
1262.5
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
1188.1
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
1181.2
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
1154.1
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
1124.2
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
1104.3
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
1100.7
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
1072.7
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
1059.0
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
1050.5
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
998.2
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
997.0
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
992.3
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
989.8
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
979.6
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
959.4
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
947.9
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
941.0
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
926.4
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
923.7
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
923.0
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
917.1
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
915.6
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
911.3
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
896.1
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
876.6
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
873.7
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
873.3
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
867.2
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
853.0
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
843.7
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
838.9
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
838.4
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
837.1
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
829.6
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
825.7
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
810.4
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
808.0
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
805.3
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
803.7
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
803.6
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
802.4
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
792.8
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
789.7
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
788.0
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
774.3
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
763.9
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
762.7
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
756.4
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
755.4
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
752.4
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
744.3
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
729.8
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
718.4
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
717.5
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
708.0
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
707.2
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
707.0
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
707.0
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
706.4
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
703.8
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
701.5
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
689.0
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
687.9
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
687.4
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
686.6
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
681.7
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
679.8
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
674.9
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
670.1
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
660.8
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
658.3
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
638.2
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
636.6
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
633.4
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
618.9
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
609.5
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
606.3
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
603.2
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
603.1
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
599.4
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
599.0
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
598.7
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
597.8
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
594.3
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
593.5
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
592.4
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
589.6
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
588.7
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
582.7
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
576.1
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
564.9
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
563.4
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
561.1
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
556.1
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
552.4
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
546.7
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
536.3
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
531.8
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
528.9
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
526.3
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
525.8
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
525.7
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
518.2
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
515.5
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
511.1
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
504.2
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
497.5
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
497.2
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
490.3
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
489.6
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
484.3
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
480.3
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
480.1
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
478.8
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
475.8
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
474.2
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
470.6
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
465.3
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
464.5
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
462.6
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
457.5
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
449.3
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
445.3
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
444.9
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
436.2
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
433.6
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
433.5
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
430.3
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
426.9
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
423.9
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
421.8
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
421.1
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
415.7
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
414.1
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
406.5
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
403.4
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
398.0
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
395.1
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
390.3
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
384.2
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
379.4
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
374.0
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
372.5
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
365.4
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
363.2
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
362.5
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
361.2
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
358.9
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
354.5
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
350.8
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
346.7
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
344.8
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
344.4
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
341.0
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
333.8
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
332.2
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
329.8
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
322.4
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
319.9
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
318.9
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
318.5
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
316.8
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
306.8
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
306.7
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
304.5
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
302.8
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
299.0
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
297.9
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
294.5
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
289.7
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
280.5
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
280.3
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
279.4
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
274.2
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
272.6
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
268.1
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
267.3
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
265.0
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
258.3
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
256.6
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
250.0
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
248.4
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
244.6
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
244.5
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
244.4
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
240.6
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
239.2
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
237.4
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
235.8
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
228.7
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
226.4
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
222.2
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
219.8
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
217.7
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
214.9
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
210.1
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
208.7
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
206.6
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
205.0
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
203.1
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
202.8
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
201.5
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
199.8
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
194.8
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
194.8
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
194.7
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
194.5
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
193.9
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
191.4
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
190.9
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
190.0
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
187.7
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
186.8
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
180.1
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
178.2
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
176.6
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
175.1
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
174.9
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
173.9
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
172.5
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
171.6
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
171.4
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
167.1
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
166.6
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
165.5
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
164.4
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
162.0
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
159.3
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
152.9
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
152.2
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
150.8
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
150.5
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
149.6
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
147.6
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
146.6
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
145.9
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
142.2
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
140.8
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
139.7
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
138.9
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
137.0
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
136.4
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
136.2
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
135.6
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
134.6
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
131.6
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
121.7
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
117.2
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
115.5
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
108.5
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
103.6
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
100.9
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
100.5
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
98.2
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
97.1
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
90.8
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
90.1
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
88.4
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
84.7
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
82.2
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
82.0
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
79.6
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
79.4
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
79.3
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
76.7
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
74.2
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
69.5
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
65.7
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
64.0
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
62.0
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
59.0
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
56.2
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
54.8
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
54.3
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
53.4
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
50.9
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
50.3
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
49.4
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
48.2
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
45.4
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
45.1
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
45.0
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
44.9
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
44.4
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
43.4
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
37.9
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
37.6
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
37.6
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
37.5
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
37.5
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
36.1
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
34.2
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
32.8
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
32.6
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
32.1
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
31.6
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
30.5
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
29.6
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
27.3
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
27.3
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
26.3
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
24.1
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
23.8
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
23.3
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
22.8
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
22.5
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
22.2
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
22.0
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
21.8
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
20.9
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
18.8
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
18.1
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
17.7
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
17.3
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
15.9
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
15.6
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
14.6
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
14.2
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
14.2
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
12.3
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
10.9
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
9.1
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
8.9
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
6.8
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
6.7
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
6.0
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
4.2
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
3.9
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
3.5
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
3.1
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
2.7
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
1.9
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
1.8
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
1.6
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
1.1
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
1.0
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
0.8
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
0.6
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
0.5
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
0.1
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
0.0
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SAA4 is potential prognostic, high expression is favorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
313.9
Number of samples
231
Samples
Sample
Description
TPM
DO23544
0 years, male, NA, stage:2, alive, 960 days
2271.5
DO227643
0 years, male, NA, stage:2, alive, 1260 days
1562.1
DO23551
0 years, male, NA, stage:3, dead, 150 days
1561.6
DO45195
0 years, male, NA, stage:1, alive, 390 days
1497.8
DO45241
0 years, male, NA, stage:1, alive, 1080 days
1487.2
DO45125
0 years, male, NA, stage:3, alive, 1680 days
1483.1
DO45109
0 years, male, NA, stage:2, alive, 1590 days
1260.0
DO48704
0 years, female, NA, stage:3, alive, 750 days
1085.8
DO50845
0 years, male, NA, stage:3, alive, 210 days
1064.6
DO48674
0 years, male, NA, stage:2, alive, 1260 days
1056.3
DO45217
0 years, female, NA, stage:3, dead, 270 days
1014.3
DO23518
0 years, male, NA, stage:2, alive, 1320 days
1014.1
DO48741
0 years, male, NA, stage:3, alive, 240 days
989.8
DO45167
0 years, male, NA, stage:2, dead, 1440 days
982.5
DO227801
0 years, female, NA, stage:1, alive, 660 days
976.3
DO45215
0 years, male, NA, stage:2, alive, 1170 days
963.1
DO45135
0 years, male, NA, stage:1, alive, 1410 days
919.2
DO45101
0 years, male, NA, stage:2, alive, 1680 days
866.8
DO23532
0 years, female, NA, stage:1, alive, 960 days
855.7
DO45105
0 years, male, NA, stage:1, alive, 1680 days
832.2
DO45227
0 years, female, NA, stage:2, alive, 1020 days
827.9
DO45107
0 years, female, NA, stage:2, alive, 1710 days
824.3
DO48693
0 years, male, NA, stage:2, alive, 900 days
793.6
DO50805
0 years, male, NA, stage:2, alive, 690 days
785.8
DO23534
0 years, male, NA, stage:2, alive, 840 days
749.5
DO45103
0 years, male, NA, stage:3, alive, 450 days
739.6
DO45257
0 years, male, NA, stage:3, alive, 810 days
733.1
DO45177
0 years, female, NA, stage:3, alive, 1260 days
725.0
DO50819
0 years, female, NA, stage:2, alive, 510 days
695.6
DO48701
0 years, male, NA, stage:2, alive, 780 days
694.6
DO50813
0 years, male, NA, stage:2, alive, 420 days
678.8
DO45199
0 years, female, NA, stage:2, alive, 1350 days
667.3
DO50774
0 years, female, NA, stage:2, alive, 720 days
662.4
DO48737
0 years, male, NA, stage:1, alive, 720 days
659.7
DO48761
0 years, male, NA, stage:2, alive, 870 days
619.5
DO50776
0 years, male, NA, stage:1, alive, 690 days
604.6
DO45229
0 years, male, NA, stage:1, alive, 990 days
578.7
DO48759
0 years, male, NA, stage:3, alive, 720 days
572.6
DO45094
0 years, male, NA, stage:3, alive, 1650 days
554.0
DO23525
0 years, male, NA, stage:4, alive, 1050 days
548.4
DO50798
0 years, male, NA, stage:3, dead, 30 days
544.4
DO48760
0 years, female, NA, stage:2, alive, 690 days
543.4
DO48742
0 years, male, NA, stage:2, alive, 600 days
543.1
DO48733
0 years, male, NA, stage:2, alive, 600 days
536.6
DO45165
0 years, male, NA, stage:2, alive, 690 days
530.0
DO48716
0 years, male, NA, stage:2, alive, 720 days
528.8
DO50855
0 years, male, NA, stage:2, alive, 570 days
526.1
DO45119
0 years, male, NA, stage:3, dead, 510 days
516.2
DO45161
0 years, male, NA, stage:2, dead, 540 days
505.8
DO23511
0 years, female, NA, stage:3, dead, 180 days
496.7
DO45201
0 years, male, NA, stage:1, alive, 900 days
495.4
DO23531
0 years, female, NA, stage:3, alive, 900 days
490.9
DO45207
0 years, male, NA, stage:1, alive, 1050 days
485.2
DO45141
0 years, male, NA, stage:2, alive, 1320 days
482.8
DO23552
0 years, female, NA, stage:1, alive, 810 days
480.1
DO45091
0 years, male, NA, stage:2, dead, 1320 days
479.5
DO23527
0 years, male, NA, stage:1, alive, 1050 days
477.9
DO50808
0 years, male, NA, stage:2, alive, 570 days
471.4
DO45191
0 years, female, NA, stage:2, alive, 1200 days
458.3
DO50809
0 years, male, NA, stage:3, dead, 720 days
456.1
DO45113
0 years, male, NA, stage:3, alive, 1560 days
454.3
DO48725
0 years, male, NA, stage:1, alive, 780 days
445.2
DO45143
0 years, male, NA, stage:3, alive, 1290 days
442.4
DO50791
0 years, female, NA, stage:1, dead, 480 days
437.5
DO45197
0 years, male, NA, stage:2, alive, 1170 days
431.3
DO50817
0 years, male, NA, stage:2, alive, 390 days
429.6
DO45273
0 years, male, NA, stage:2, alive, 480 days
421.2
DO45223
0 years, male, NA, stage:4, alive, 1020 days
419.7
DO45095
0 years, male, NA, stage:2, alive, 1620 days
411.8
DO45181
0 years, female, NA, stage:2, alive, 1200 days
400.6
DO50800
0 years, male, NA, stage:2, alive, 510 days
399.8
DO50818
0 years, male, NA, stage:2, alive, 510 days
392.6
DO45153
0 years, female, NA, stage:2, alive, 1380 days
384.3
DO45096
0 years, male, NA, stage:2, dead, 1290 days
372.8
DO45115
0 years, male, NA, stage:2, alive, 840 days
370.3
DO45179
0 years, female, NA, stage:2, alive, 600 days
367.5
DO48712
0 years, male, NA, stage:2, alive, 810 days
367.2
DO50789
0 years, female, NA, stage:2, alive, 570 days
361.6
DO45111
0 years, male, NA, stage:2, alive, 1590 days
351.2
DO45263
0 years, male, NA, stage:3, dead, 270 days
349.6
DO23517
0 years, male, NA, stage:2, alive, 1200 days
348.8
DO45261
0 years, male, NA, stage:3, alive, 990 days
340.2
DO45239
0 years, male, NA, stage:2, alive, 870 days
331.2
DO50787
0 years, male, NA, stage:3, alive, 480 days
327.8
DO23510
0 years, female, NA, stage:2, alive, 870 days
324.9
DO50832
0 years, male, NA, stage:3, alive, 90 days
318.7
DO50804
0 years, male, NA, stage:2, alive, 720 days
313.8
DO23538
0 years, male, NA, stage:2, alive, 450 days
306.7
DO45099
0 years, male, NA, stage:3, alive, 1590 days
304.4
DO48700
0 years, female, NA, stage:2, alive, 810 days
303.5
DO50840
0 years, male, NA, stage:2, alive, 330 days
293.3
DO23545
0 years, male, NA, stage:2, dead, 570 days
292.4
DO23535
0 years, male, NA, stage:1, alive, 960 days
280.9
DO48723
0 years, male, NA, stage:1, alive, 600 days
280.4
DO50816
0 years, male, NA, stage:2, alive, 390 days
274.0
DO50793
0 years, male, NA, stage:4, alive, 540 days
266.7
DO23524
0 years, female, NA, stage:2, alive, 1050 days
262.6
DO45117
0 years, female, NA, stage:2, dead, 1110 days
256.0
DO23515
0 years, male, NA, stage:2, alive, 1230 days
253.4
DO50814
0 years, male, NA, stage:3, alive, 420 days
245.6
DO45233
0 years, male, NA, stage:3, alive, 900 days
240.8
DO45235
0 years, female, NA, stage:1, alive, 900 days
229.9
DO50820
0 years, female, NA, stage:3, alive, 510 days
221.7
DO45092
0 years, male, NA, stage:4, dead, 1200 days
221.3
DO50839
0 years, female, NA, stage:3, alive, 330 days
220.7
DO48721
0 years, female, NA, stage:1, alive, 900 days
218.8
DO23543
0 years, male, NA, stage:2, alive, 1020 days
218.6
DO45149
0 years, female, NA, stage:2, alive, 1260 days
216.8
DO48720
0 years, female, NA, stage:2, alive, 570 days
216.1
DO45231
0 years, male, NA, stage:2, alive, 930 days
211.9
DO50807
0 years, male, NA, stage:1, alive, 540 days
208.5
DO50857
0 years, male, NA, stage:2, alive, 210 days
207.2
DO45157
0 years, male, NA, stage:2, alive, 1980 days
205.3
DO50806
0 years, male, NA, stage:4, alive, 540 days
198.2
DO45139
0 years, male, NA, stage:3, alive, 1320 days
196.1
DO45159
0 years, male, NA, stage:3, alive, 1470 days
185.4
DO45213
0 years, male, NA, stage:1, alive, 1200 days
181.9
DO23546
0 years, male, NA, stage:2, alive, 1050 days
179.4
DO23541
0 years, male, NA, stage:2, alive, 930 days
179.3
DO48736
0 years, female, NA, stage:1, alive, 600 days
179.3
DO45225
0 years, male, NA, stage:1, alive, 1050 days
179.0
DO45187
0 years, female, NA, stage:1, alive, 1260 days
176.7
DO48743
0 years, female, NA, stage:2, alive, 570 days
162.9
DO23550
0 years, male, NA, stage:1, alive, 990 days
155.4
DO45247
0 years, female, NA, stage:2, alive, 210 days
153.8
DO23512
0 years, male, NA, stage:1, alive, 1260 days
150.1
DO45281
0 years, male, NA, stage:4, alive, 750 days
146.1
DO45173
0 years, male, NA, stage:3, alive, 1170 days
146.1
DO45131
0 years, male, NA, stage:4, dead, 360 days
145.1
DO45209
0 years, male, NA, stage:4, alive, 1350 days
145.1
DO23509
0 years, male, NA, stage:3, dead, 780 days
144.5
DO23540
0 years, male, NA, stage:1, alive, 750 days
143.3
DO50850
0 years, male, NA, stage:3, alive, 720 days
137.9
DO45243
0 years, female, NA, stage:3, alive, 930 days
133.4
DO45255
0 years, male, NA, stage:3, alive, 720 days
132.5
DO48732
0 years, male, NA, stage:3, alive, 630 days
132.1
DO45265
0 years, male, NA, stage:3, alive, 1020 days
129.7
DO48728
0 years, female, NA, stage:2, alive, 150 days
129.4
DO23528
0 years, female, NA, stage:2, alive, 1020 days
122.6
DO48727
0 years, female, NA, stage:2, dead, 390 days
120.5
DO48715
0 years, female, NA, stage:2, dead, 690 days
119.4
DO50825
0 years, male, NA, stage:2, alive, 390 days
119.2
DO45123
0 years, female, NA, stage:2, dead, 570 days
114.0
DO50811
0 years, male, NA, stage:1, alive, 450 days
107.6
DO23526
0 years, male, NA, stage:3, alive, 1050 days
105.3
DO48746
0 years, male, NA, stage:3, alive, 570 days
105.0
DO48679
0 years, male, NA, stage:2, alive, 1200 days
104.6
DO23548
0 years, female, NA, stage:1, alive, 840 days
103.2
DO45163
0 years, male, NA, stage:2, alive, 960 days
102.4
DO23542
0 years, male, NA, stage:3, alive, 960 days
101.6
DO48697
0 years, female, NA, stage:2, dead, 810 days
100.1
DO48695
0 years, male, NA, stage:2, alive, 720 days
97.8
DO50822
0 years, male, NA, stage:2, alive, 510 days
97.4
DO45183
0 years, female, NA, stage:2, dead, 570 days
96.1
DO45221
0 years, female, NA, stage:4, dead, 390 days
94.5
DO50799
0 years, female, NA, stage:2, alive, 540 days
91.2
DO50783
0 years, male, NA, stage:3, alive, 480 days
90.2
DO48677
0 years, male, NA, stage:3, alive, 1140 days
88.6
DO48706
0 years, male, NA, stage:2, alive, 870 days
87.6
DO23530
0 years, male, NA, stage:4, dead, 180 days
83.7
DO45251
0 years, female, NA, stage:2, alive, 900 days
77.9
DO45155
0 years, male, NA, stage:2, alive, 2160 days
77.0
DO50802
0 years, male, NA, stage:2, alive, 930 days
76.5
DO45169
0 years, male, NA, stage:3, alive, 1350 days
75.1
DO45175
0 years, male, NA, stage:2, alive, 1140 days
72.7
DO45121
0 years, male, NA, stage:3, alive, 1530 days
70.4
DO45249
0 years, male, NA, stage:1, alive, 630 days
68.5
DO45253
0 years, male, NA, stage:2, alive, 870 days
67.7
DO23537
0 years, male, NA, stage:2, dead, 900 days
66.0
DO48730
0 years, female, NA, stage:2, alive, 630 days
64.8
DO23508
0 years, female, NA, stage:2, alive, 390 days
63.2
DO45219
0 years, male, NA, stage:2, alive, 1080 days
62.3
DO48672
0 years, male, NA, stage:2, alive, 450 days
60.2
DO45129
0 years, male, NA, stage:3, alive, 1470 days
59.6
DO45137
0 years, male, NA, stage:1, alive, 1320 days
57.0
DO45203
0 years, female, NA, stage:2, alive, 1170 days
56.5
DO50778
0 years, male, NA, stage:4, alive, 630 days
56.3
DO48751
0 years, male, NA, stage:2, dead, 480 days
53.6
DO23513
0 years, male, NA, stage:3, alive, 1200 days
52.6
DO45301
0 years, male, NA, stage:2, dead, 1440 days
51.1
DO23547
0 years, male, NA, stage:1, alive, 1020 days
50.1
DO48717
0 years, male, NA, stage:4, dead, 180 days
43.6
DO23514
0 years, male, NA, stage:2, alive, 1290 days
40.0
DO23539
0 years, male, NA, stage:1, alive, 1110 days
37.1
DO45237
0 years, male, NA, stage:2, alive, 900 days
35.7
DO50785
0 years, male, NA, stage:4, dead, 90 days
34.4
DO50844
0 years, male, NA, stage:4, alive, 300 days
34.0
DO23549
0 years, male, NA, stage:3, alive, 990 days
33.9
DO48681
0 years, male, NA, stage:2, alive, 900 days
32.5
DO48682
0 years, female, NA, stage:3, dead, 120 days
31.3
DO45205
0 years, female, NA, stage:2, dead, 90 days
24.4
DO50803
0 years, female, NA, stage:1, alive, 540 days
24.2
DO45145
0 years, male, NA, stage:3, dead, 60 days
24.1
DO45287
0 years, male, NA, stage:1, alive, 390 days
21.9
DO45185
0 years, male, NA, stage:2, alive, 600 days
21.9
DO48757
0 years, female, NA, stage:3, alive, 480 days
21.7
DO45171
0 years, male, NA, stage:3, alive, 600 days
21.4
DO23533
0 years, male, NA, stage:2, alive, 900 days
19.1
DO45133
0 years, male, NA, stage:3, dead, 660 days
19.1
DO45305
0 years, male, NA, stage:4, alive, 300 days
18.6
DO23536
0 years, male, NA, stage:2, alive, 930 days
15.3
DO45267
0 years, male, NA, stage:3, dead, 570 days
15.2
DO23516
0 years, male, NA, stage:3, dead, 20 days
15.2
DO50829
0 years, male, NA, stage:3, alive, 570 days
14.7
DO45211
0 years, male, NA, stage:3, alive, 240 days
13.6
DO50859
0 years, male, NA, stage:2, alive, 180 days
13.1
DO45285
0 years, male, NA, stage:3, alive, 480 days
11.8
DO45259
0 years, male, NA, stage:3, alive, 330 days
7.4
DO50815
0 years, male, NA, stage:3, alive, 150 days
6.9
DO48747
0 years, male, NA, stage:3, alive, 540 days
6.5
DO45277
0 years, male, NA, stage:3, alive, 600 days
5.8
DO45283
0 years, male, NA, stage:3, alive, 510 days
4.7
DO48719
0 years, male, NA, stage:2, alive, 690 days
4.6
DO45193
0 years, female, NA, stage:4, dead, 120 days
3.7
DO45269
0 years, male, NA, stage:3, alive, 750 days
3.4
DO45127
0 years, male, NA, stage:3, dead, 420 days
3.3
DO45189
0 years, female, NA, stage:2, alive, 1200 days
2.8
DO45279
0 years, male, NA, stage:3, alive, 1290 days
2.3
DO45307
0 years, female, NA, stage:4, dead, 240 days
2.0
DO45245
0 years, female, NA, stage:2, dead, 240 days
2.0
DO23519
0 years, male, NA, stage:3, alive, 630 days
1.7
DO45093
0 years, male, NA, stage:2, dead, 720 days
1.7
DO23523
0 years, male, NA, stage:3, alive, 1080 days
1.3
DO23529
0 years, male, NA, stage:4, alive, 930 days
1.3
DO45297
0 years, female, NA, stage:4, dead, 1260 days
1.3
DO23521
0 years, male, NA, stage:3, alive, 1110 days
1.3
DO45275
0 years, male, NA, stage:3, dead, 10 days
1.2
DO45097
0 years, male, NA, stage:3, alive, 1620 days
0.9
DO45303
0 years, female, NA, stage:3, alive, 990 days
0.6
DO45299
0 years, female, NA, stage:1, alive, 1440 days
0.5
DO45289
0 years, female, NA, stage:3, alive, 360 days
0.2
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
471
Tumor
N/A
351
Tumor
N/A
472
Normal
N/A
231
Tumor
N/A
352
Normal
N/A
473
Tumor
N/A
111
Normal
N/A
232
Normal
N/A
353
Tumor
N/A
474
Normal
N/A
112
Tumor
N/A
354
Normal
N/A
113
Tumor
N/A
355
Tumor
N/A
114
Normal
N/A
356
Normal
N/A
477
Tumor
N/A
357
Tumor
N/A
478
Normal
N/A
358
Normal
N/A
911
Tumor
N/A
912
Normal
N/A
913
Tumor
N/A
914
Normal
N/A
915
Tumor
N/A
916
Normal
N/A
917
Tumor
N/A
918
Normal
N/A
481
Tumor
N/A
361
Tumor
N/A
482
Normal
N/A
362
Normal
N/A
483
Tumor
N/A
363
Tumor
N/A
484
Normal
N/A
364
Normal
N/A
123
Tumor
N/A
365
Tumor
N/A
124
Normal
N/A
366
Normal
N/A
487
Tumor
N/A
125
Tumor
N/A
367
Tumor
N/A
488
Normal
N/A
126
Normal
N/A
368
Normal
N/A
127
Tumor
N/A
128
Normal
N/A
921
Tumor
N/A
922
Normal
N/A
923
Tumor
N/A
924
Normal
N/A
925
Tumor
N/A
926
Normal
N/A
491
Tumor
N/A
492
Normal
N/A
493
Tumor
N/A
131
Tumor
N/A
494
Normal
N/A
132
Normal
N/A
375
Tumor
N/A
376
Normal
N/A
497
Tumor
N/A
135
Tumor
N/A
498
Normal
N/A
136
Normal
N/A
257
Tumor
N/A
137
Tumor
N/A
258
Normal
N/A
138
Normal
N/A
813
Tumor
N/A
814
Normal
N/A
815
Tumor
N/A
816
Normal
N/A
937
Tumor
N/A
817
Tumor
N/A
938
Normal
N/A
818
Normal
N/A
261
Tumor
N/A
141
Tumor
N/A
262
Normal
N/A
383
Tumor
N/A
142
Normal
N/A
384
Normal
N/A
385
Tumor
N/A
386
Normal
N/A
145
Tumor
N/A
387
Tumor
N/A
146
Normal
N/A
267
Tumor
N/A
388
Normal
N/A
147
Tumor
N/A
268
Normal
N/A
148
Normal
N/A
943
Tumor
N/A
823
Tumor
N/A
944
Normal
N/A
824
Normal
N/A
1022
Normal
N/A
1021
Tumor
N/A
391
Tumor
N/A
271
Tumor
N/A
392
Normal
N/A
272
Normal
N/A
393
Tumor
N/A
394
Normal
N/A
395
Tumor
N/A
396
Normal
N/A
277
Tumor
N/A
1016
Normal
N/A
278
Normal
N/A
1015
Tumor
N/A
1014
Normal
N/A
951
Tumor
N/A
1013
Tumor
N/A
952
Normal
N/A
953
Tumor
N/A
954
Normal
N/A
713
Tumor
N/A
955
Tumor
N/A
714
Normal
N/A
956
Normal
N/A
715
Tumor
N/A
957
Tumor
N/A
716
Normal
N/A
958
Normal
N/A
1032
Normal
N/A
1031
Tumor
N/A
161
Tumor
N/A
162
Normal
N/A
283
Tumor
N/A
284
Normal
N/A
285
Tumor
N/A
286
Normal
N/A
1028
Normal
N/A
1027
Tumor
N/A
1026
Normal
N/A
1025
Tumor
N/A
721
Tumor
N/A
963
Tumor
N/A
722
Normal
N/A
964
Normal
N/A
723
Tumor
N/A
965
Tumor
N/A
724
Normal
N/A
966
Normal
N/A
967
Tumor
N/A
968
Normal
N/A
727
Tumor
N/A
728
Normal
N/A
1044
Normal
N/A
1043
Tumor
N/A
1042
Normal
N/A
1041
Tumor
N/A
171
Tumor
N/A
172
Normal
N/A
297
Tumor
N/A
298
Normal
N/A
851
Tumor
N/A
852
Normal
N/A
975
Tumor
N/A
976
Normal
N/A
977
Tumor
N/A
615
Tumor
N/A
857
Tumor
N/A
978
Normal
N/A
616
Normal
N/A
737
Tumor
N/A
858
Normal
N/A
617
Tumor
N/A
738
Normal
N/A
618
Normal
N/A
185
Tumor
N/A
186
Normal
N/A
187
Tumor
N/A
188
Normal
N/A
981
Tumor
N/A
861
Tumor
N/A
982
Normal
N/A
741
Tumor
N/A
862
Normal
N/A
983
Tumor
N/A
742
Normal
N/A
863
Tumor
N/A
984
Normal
N/A
1046
Normal
N/A
743
Tumor
N/A
864
Normal
N/A
1045
Tumor
N/A
744
Normal
N/A
865
Tumor
N/A
745
Tumor
N/A
866
Normal
N/A
746
Normal
N/A
867
Tumor
N/A
868
Normal
N/A
627
Tumor
N/A
628
Normal
N/A
191
Tumor
N/A
192
Normal
N/A
195
Tumor
N/A
196
Normal
N/A
873
Tumor
N/A
874
Normal
N/A
513
Tumor
N/A
755
Tumor
N/A
514
Normal
N/A
635
Tumor
N/A
756
Normal
N/A
877
Tumor
N/A
515
Tumor
N/A
636
Normal
N/A
878
Normal
N/A
516
Normal
N/A
517
Tumor
N/A
518
Normal
N/A
881
Tumor
N/A
882
Normal
N/A
641
Tumor
N/A
883
Tumor
N/A
642
Normal
N/A
884
Normal
N/A
523
Tumor
N/A
524
Normal
N/A
525
Tumor
N/A
526
Normal
N/A
647
Tumor
N/A
527
Tumor
N/A
648
Normal
N/A
528
Normal
N/A
411
Tumor
N/A
412
Normal
N/A
533
Tumor
N/A
413
Tumor
N/A
534
Normal
N/A
414
Normal
N/A
535
Tumor
N/A
777
Tumor
N/A
415
Tumor
N/A
536
Normal
N/A
778
Normal
N/A
416
Normal
N/A
537
Tumor
N/A
538
Normal
N/A
661
Tumor
N/A
662
Normal
N/A
421
Tumor
N/A
663
Tumor
N/A
422
Normal
N/A
664
Normal
N/A
785
Tumor
N/A
423
Tumor
N/A
665
Tumor
N/A
786
Normal
N/A
424
Normal
N/A
545
Tumor
N/A
666
Normal
N/A
425
Tumor
N/A
546
Normal
N/A
426
Normal
N/A
427
Tumor
N/A
428
Normal
N/A
671
Tumor
N/A
672
Normal
N/A
431
Tumor
N/A
311
Tumor
N/A
432
Normal
N/A
553
Tumor
N/A
312
Normal
N/A
433
Tumor
N/A
554
Normal
N/A
313
Tumor
N/A
434
Normal
N/A
314
Normal
N/A
435
Tumor
N/A
436
Normal
N/A
557
Tumor
N/A
558
Normal
N/A
563
Tumor
N/A
443
Tumor
N/A
564
Normal
N/A
685
Tumor
N/A
444
Normal
N/A
686
Normal
N/A
445
Tumor
N/A
446
Normal
N/A
567
Tumor
N/A
447
Tumor
N/A
568
Normal
N/A
327
Tumor
N/A
448
Normal
N/A
328
Normal
N/A
571
Tumor
N/A
451
Tumor
N/A
572
Normal
N/A
331
Tumor
N/A
452
Normal
N/A
573
Tumor
N/A
211
Tumor
N/A
332
Normal
N/A
574
Normal
N/A
695
Tumor
N/A
212
Normal
N/A
696
Normal
N/A
213
Tumor
N/A
455
Tumor
N/A
697
Tumor
N/A
214
Normal
N/A
456
Normal
N/A
698
Normal
N/A
217
Tumor
N/A
218
Normal
N/A
461
Tumor
N/A
341
Tumor
N/A
462
Normal
N/A
221
Tumor
N/A
342
Normal
N/A
463
Tumor
N/A
222
Normal
N/A
343
Tumor
N/A
464
Normal
N/A
223
Tumor
N/A
344
Normal
N/A
465
Tumor
N/A
224
Normal
N/A
466
Normal
N/A
467
Tumor
N/A
468
Normal
N/A
227
Tumor
N/A
228
Normal
N/A
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.