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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
MTG1 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
26.1
Number of samples
362
Samples
Sample
Description
TPM
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
80.4
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
71.6
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
67.8
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
66.1
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
65.5
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
61.2
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
59.9
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
59.4
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
56.8
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
56.5
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
56.2
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
56.1
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
55.3
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
54.9
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
54.7
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
54.3
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
54.3
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
54.0
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
53.9
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
53.4
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
53.3
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
53.2
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
51.8
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
51.7
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
49.9
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
49.8
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
48.5
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
47.9
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
47.7
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
47.4
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
47.0
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
46.2
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
45.3
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
45.0
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
43.5
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
42.9
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
42.8
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
42.0
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
41.7
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
41.6
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
41.1
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
40.7
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
40.6
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
40.6
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
40.3
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
40.3
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
39.3
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
39.2
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
39.2
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
38.9
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
38.7
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
38.6
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
38.3
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
37.5
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
37.2
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
36.9
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
36.7
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
36.7
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
36.6
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
36.5
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
36.4
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
36.4
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
36.4
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
36.3
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
35.8
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
35.7
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
35.5
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
35.4
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
35.4
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
35.3
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
34.9
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
34.6
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
34.5
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
34.5
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
34.4
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
34.4
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
34.3
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
33.5
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
33.4
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
33.4
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
33.3
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
33.0
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
33.0
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
32.8
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
32.6
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
32.6
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
32.1
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
31.6
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
31.3
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
31.3
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
31.3
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
31.2
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
31.2
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
31.1
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
30.9
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
30.9
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
30.8
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
30.7
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
30.7
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
30.4
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
30.4
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
30.2
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
30.2
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
30.1
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
30.0
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
29.8
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
29.5
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
29.4
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
29.3
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
29.3
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
29.2
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
29.1
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
29.0
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
28.8
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
28.7
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
28.5
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
28.3
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
28.2
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
28.2
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
28.2
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
28.2
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
28.2
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
28.2
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
27.8
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
27.7
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
27.6
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
27.5
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
27.5
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
27.4
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
27.2
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
27.1
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
27.0
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
27.0
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
27.0
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
26.9
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
26.8
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
26.6
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
26.6
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
26.4
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
26.3
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
26.3
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
26.2
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
26.1
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
26.0
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
25.9
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
25.9
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
25.9
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
25.5
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
25.3
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
25.2
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
25.1
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
24.9
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
24.8
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
24.8
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
24.8
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
24.7
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
24.7
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
24.7
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
24.6
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
24.6
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
24.5
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
24.5
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
24.4
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
24.4
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
24.4
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
24.3
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
24.1
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
24.1
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
24.0
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
23.9
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
23.7
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
23.6
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
23.6
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
23.6
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
23.5
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
23.5
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
23.5
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
23.4
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
23.3
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
23.3
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
23.3
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
23.3
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
23.2
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
23.1
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
23.1
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
23.0
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
23.0
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
22.9
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
22.8
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
22.7
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
22.7
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
22.7
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
22.7
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
22.7
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
22.6
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
22.6
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
22.6
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
22.6
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
22.5
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
22.4
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
22.4
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
22.4
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
22.2
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
22.1
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
22.1
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
21.9
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
21.8
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
21.7
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
21.7
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
21.6
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
21.5
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
21.4
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
21.4
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
21.4
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
21.3
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
21.2
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
21.2
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
20.9
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
20.9
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
20.8
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
20.7
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
20.7
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
20.6
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
20.5
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
20.5
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
20.5
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
20.5
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
20.4
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
20.3
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
20.2
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
20.1
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
20.1
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
20.1
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
20.0
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
20.0
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
19.9
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
19.9
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
19.8
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
19.7
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
19.6
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
19.5
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
19.5
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
19.5
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
19.5
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
19.5
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
19.5
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
19.5
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
19.4
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
19.4
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
19.3
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
19.3
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
19.3
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
19.0
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
19.0
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
18.8
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
18.8
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
18.8
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
18.7
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
18.7
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
18.6
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
18.5
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
18.2
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
18.2
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
18.1
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
18.1
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
18.1
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
18.1
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
18.0
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
17.9
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
17.9
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
17.8
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
17.3
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
17.3
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
17.3
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
17.3
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
17.1
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
16.9
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
16.8
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
16.6
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
16.5
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
16.5
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
16.4
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
16.1
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
16.1
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
16.1
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
16.0
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
16.0
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
16.0
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
16.0
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
15.9
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
15.9
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
15.7
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
15.6
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
15.6
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
15.5
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
15.5
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
15.4
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
15.3
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
15.3
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
15.3
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
15.2
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
15.1
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
14.9
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
14.9
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
14.9
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
14.8
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
14.8
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
14.8
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
14.7
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
14.7
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
14.7
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
14.6
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
14.6
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
14.5
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
14.4
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
14.4
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
14.4
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
14.4
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
14.4
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
14.2
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
14.2
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
13.9
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
13.7
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
13.7
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
13.6
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
13.6
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
13.5
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
13.3
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
13.2
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
13.2
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
13.2
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
13.1
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
13.1
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
12.8
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
12.8
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
12.7
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
12.5
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
12.5
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
12.4
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
12.4
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
12.3
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
12.1
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
12.1
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
11.8
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
11.8
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
11.7
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
11.6
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
11.6
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
11.4
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
11.2
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
10.6
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
10.6
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
10.5
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
9.4
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
8.8
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
8.7
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
8.5
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
8.2
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
7.8
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
7.5
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
6.5
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
MTG1 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
29.7
Number of samples
231
Samples
Sample
Description
TPM
DO48697
0 years, female, NA, stage:2, dead, 810 days
94.6
DO45209
0 years, male, NA, stage:4, alive, 1350 days
90.1
DO45121
0 years, male, NA, stage:3, alive, 1530 days
84.1
DO23546
0 years, male, NA, stage:2, alive, 1050 days
82.7
DO48719
0 years, male, NA, stage:2, alive, 690 days
80.9
DO45105
0 years, male, NA, stage:1, alive, 1680 days
77.5
DO48736
0 years, female, NA, stage:1, alive, 600 days
77.5
DO23508
0 years, female, NA, stage:2, alive, 390 days
77.1
DO45217
0 years, female, NA, stage:3, dead, 270 days
74.3
DO23528
0 years, female, NA, stage:2, alive, 1020 days
73.2
DO45301
0 years, male, NA, stage:2, dead, 1440 days
68.2
DO45141
0 years, male, NA, stage:2, alive, 1320 days
68.1
DO45257
0 years, male, NA, stage:3, alive, 810 days
65.8
DO45183
0 years, female, NA, stage:2, dead, 570 days
58.9
DO48695
0 years, male, NA, stage:2, alive, 720 days
58.2
DO50839
0 years, female, NA, stage:3, alive, 330 days
58.0
DO45159
0 years, male, NA, stage:3, alive, 1470 days
55.7
DO45259
0 years, male, NA, stage:3, alive, 330 days
54.8
DO48757
0 years, female, NA, stage:3, alive, 480 days
53.9
DO45241
0 years, male, NA, stage:1, alive, 1080 days
53.9
DO45101
0 years, male, NA, stage:2, alive, 1680 days
53.2
DO23537
0 years, male, NA, stage:2, dead, 900 days
52.8
DO45185
0 years, male, NA, stage:2, alive, 600 days
51.9
DO45219
0 years, male, NA, stage:2, alive, 1080 days
51.6
DO45289
0 years, female, NA, stage:3, alive, 360 days
50.9
DO45305
0 years, male, NA, stage:4, alive, 300 days
49.2
DO23526
0 years, male, NA, stage:3, alive, 1050 days
48.2
DO50809
0 years, male, NA, stage:3, dead, 720 days
47.2
DO45179
0 years, female, NA, stage:2, alive, 600 days
46.9
DO227643
0 years, male, NA, stage:2, alive, 1260 days
46.7
DO50825
0 years, male, NA, stage:2, alive, 390 days
46.1
DO45092
0 years, male, NA, stage:4, dead, 1200 days
45.6
DO45299
0 years, female, NA, stage:1, alive, 1440 days
45.2
DO23512
0 years, male, NA, stage:1, alive, 1260 days
44.8
DO50799
0 years, female, NA, stage:2, alive, 540 days
43.6
DO45203
0 years, female, NA, stage:2, alive, 1170 days
43.1
DO50844
0 years, male, NA, stage:4, alive, 300 days
42.7
DO45173
0 years, male, NA, stage:3, alive, 1170 days
42.6
DO50776
0 years, male, NA, stage:1, alive, 690 days
42.3
DO23547
0 years, male, NA, stage:1, alive, 1020 days
42.2
DO23515
0 years, male, NA, stage:2, alive, 1230 days
41.1
DO48682
0 years, female, NA, stage:3, dead, 120 days
40.4
DO50806
0 years, male, NA, stage:4, alive, 540 days
40.3
DO45095
0 years, male, NA, stage:2, alive, 1620 days
40.3
DO45171
0 years, male, NA, stage:3, alive, 600 days
38.8
DO50816
0 years, male, NA, stage:2, alive, 390 days
38.4
DO45287
0 years, male, NA, stage:1, alive, 390 days
38.2
DO23543
0 years, male, NA, stage:2, alive, 1020 days
38.1
DO45161
0 years, male, NA, stage:2, dead, 540 days
37.8
DO45307
0 years, female, NA, stage:4, dead, 240 days
37.6
DO23549
0 years, male, NA, stage:3, alive, 990 days
37.5
DO23535
0 years, male, NA, stage:1, alive, 960 days
37.4
DO50798
0 years, male, NA, stage:3, dead, 30 days
37.4
DO48737
0 years, male, NA, stage:1, alive, 720 days
37.2
DO48706
0 years, male, NA, stage:2, alive, 870 days
37.1
DO45281
0 years, male, NA, stage:4, alive, 750 days
37.0
DO50817
0 years, male, NA, stage:2, alive, 390 days
36.9
DO45189
0 years, female, NA, stage:2, alive, 1200 days
36.6
DO50811
0 years, male, NA, stage:1, alive, 450 days
36.4
DO50785
0 years, male, NA, stage:4, dead, 90 days
36.0
DO50814
0 years, male, NA, stage:3, alive, 420 days
35.6
DO23519
0 years, male, NA, stage:3, alive, 630 days
35.4
DO50815
0 years, male, NA, stage:3, alive, 150 days
35.2
DO45273
0 years, male, NA, stage:2, alive, 480 days
35.0
DO50820
0 years, female, NA, stage:3, alive, 510 days
34.8
DO48700
0 years, female, NA, stage:2, alive, 810 days
34.8
DO48725
0 years, male, NA, stage:1, alive, 780 days
33.6
DO23533
0 years, male, NA, stage:2, alive, 900 days
33.1
DO50855
0 years, male, NA, stage:2, alive, 570 days
33.0
DO48747
0 years, male, NA, stage:3, alive, 540 days
32.7
DO45297
0 years, female, NA, stage:4, dead, 1260 days
32.5
DO50803
0 years, female, NA, stage:1, alive, 540 days
32.2
DO45103
0 years, male, NA, stage:3, alive, 450 days
32.1
DO23548
0 years, female, NA, stage:1, alive, 840 days
32.1
DO50845
0 years, male, NA, stage:3, alive, 210 days
31.8
DO48730
0 years, female, NA, stage:2, alive, 630 days
31.7
DO50829
0 years, male, NA, stage:3, alive, 570 days
31.5
DO23545
0 years, male, NA, stage:2, dead, 570 days
31.4
DO48720
0 years, female, NA, stage:2, alive, 570 days
31.4
DO45143
0 years, male, NA, stage:3, alive, 1290 days
31.4
DO45187
0 years, female, NA, stage:1, alive, 1260 days
31.3
DO23525
0 years, male, NA, stage:4, alive, 1050 days
31.1
DO45213
0 years, male, NA, stage:1, alive, 1200 days
30.9
DO48732
0 years, male, NA, stage:3, alive, 630 days
30.8
DO23539
0 years, male, NA, stage:1, alive, 1110 days
30.7
DO48677
0 years, male, NA, stage:3, alive, 1140 days
30.6
DO45096
0 years, male, NA, stage:2, dead, 1290 days
30.5
DO48715
0 years, female, NA, stage:2, dead, 690 days
30.3
DO50805
0 years, male, NA, stage:2, alive, 690 days
30.2
DO45215
0 years, male, NA, stage:2, alive, 1170 days
29.9
DO45263
0 years, male, NA, stage:3, dead, 270 days
29.9
DO45211
0 years, male, NA, stage:3, alive, 240 days
29.4
DO45303
0 years, female, NA, stage:3, alive, 990 days
29.2
DO45249
0 years, male, NA, stage:1, alive, 630 days
29.1
DO48672
0 years, male, NA, stage:2, alive, 450 days
29.1
DO50783
0 years, male, NA, stage:3, alive, 480 days
29.0
DO45107
0 years, female, NA, stage:2, alive, 1710 days
28.9
DO23510
0 years, female, NA, stage:2, alive, 870 days
28.6
DO48727
0 years, female, NA, stage:2, dead, 390 days
28.5
DO48712
0 years, male, NA, stage:2, alive, 810 days
28.3
DO23550
0 years, male, NA, stage:1, alive, 990 days
28.3
DO23516
0 years, male, NA, stage:3, dead, 20 days
28.1
DO23527
0 years, male, NA, stage:1, alive, 1050 days
28.1
DO48751
0 years, male, NA, stage:2, dead, 480 days
28.0
DO48743
0 years, female, NA, stage:2, alive, 570 days
27.9
DO50822
0 years, male, NA, stage:2, alive, 510 days
27.9
DO48759
0 years, male, NA, stage:3, alive, 720 days
27.7
DO50840
0 years, male, NA, stage:2, alive, 330 days
27.6
DO23529
0 years, male, NA, stage:4, alive, 930 days
27.5
DO45253
0 years, male, NA, stage:2, alive, 870 days
27.3
DO45269
0 years, male, NA, stage:3, alive, 750 days
27.2
DO45231
0 years, male, NA, stage:2, alive, 930 days
27.2
DO50802
0 years, male, NA, stage:2, alive, 930 days
27.1
DO45167
0 years, male, NA, stage:2, dead, 1440 days
26.9
DO23540
0 years, male, NA, stage:1, alive, 750 days
26.8
DO48674
0 years, male, NA, stage:2, alive, 1260 days
26.2
DO45117
0 years, female, NA, stage:2, dead, 1110 days
26.1
DO45191
0 years, female, NA, stage:2, alive, 1200 days
26.0
DO45243
0 years, female, NA, stage:3, alive, 930 days
25.9
DO45229
0 years, male, NA, stage:1, alive, 990 days
25.9
DO48723
0 years, male, NA, stage:1, alive, 600 days
25.9
DO45099
0 years, male, NA, stage:3, alive, 1590 days
25.8
DO50789
0 years, female, NA, stage:2, alive, 570 days
25.1
DO45275
0 years, male, NA, stage:3, dead, 10 days
25.1
DO45115
0 years, male, NA, stage:2, alive, 840 days
25.1
DO50818
0 years, male, NA, stage:2, alive, 510 days
24.9
DO23517
0 years, male, NA, stage:2, alive, 1200 days
24.7
DO50778
0 years, male, NA, stage:4, alive, 630 days
24.5
DO45239
0 years, male, NA, stage:2, alive, 870 days
24.4
DO45165
0 years, male, NA, stage:2, alive, 690 days
24.4
DO45094
0 years, male, NA, stage:3, alive, 1650 days
24.2
DO23514
0 years, male, NA, stage:2, alive, 1290 days
24.1
DO45235
0 years, female, NA, stage:1, alive, 900 days
24.1
DO50807
0 years, male, NA, stage:1, alive, 540 days
24.0
DO50804
0 years, male, NA, stage:2, alive, 720 days
23.8
DO23532
0 years, female, NA, stage:1, alive, 960 days
23.4
DO48704
0 years, female, NA, stage:3, alive, 750 days
23.3
DO45123
0 years, female, NA, stage:2, dead, 570 days
23.2
DO50791
0 years, female, NA, stage:1, dead, 480 days
22.4
DO45265
0 years, male, NA, stage:3, alive, 1020 days
22.2
DO45195
0 years, male, NA, stage:1, alive, 390 days
22.1
DO45153
0 years, female, NA, stage:2, alive, 1380 days
22.1
DO45201
0 years, male, NA, stage:1, alive, 900 days
21.9
DO50800
0 years, male, NA, stage:2, alive, 510 days
21.9
DO45197
0 years, male, NA, stage:2, alive, 1170 days
21.8
DO48761
0 years, male, NA, stage:2, alive, 870 days
21.7
DO45279
0 years, male, NA, stage:3, alive, 1290 days
21.7
DO45145
0 years, male, NA, stage:3, dead, 60 days
21.7
DO45255
0 years, male, NA, stage:3, alive, 720 days
21.6
DO23523
0 years, male, NA, stage:3, alive, 1080 days
21.4
DO45109
0 years, male, NA, stage:2, alive, 1590 days
21.3
DO45127
0 years, male, NA, stage:3, dead, 420 days
21.2
DO45163
0 years, male, NA, stage:2, alive, 960 days
21.1
DO23518
0 years, male, NA, stage:2, alive, 1320 days
21.1
DO45129
0 years, male, NA, stage:3, alive, 1470 days
20.8
DO45267
0 years, male, NA, stage:3, dead, 570 days
20.8
DO48733
0 years, male, NA, stage:2, alive, 600 days
20.7
DO45139
0 years, male, NA, stage:3, alive, 1320 days
20.6
DO45133
0 years, male, NA, stage:3, dead, 660 days
20.6
DO48742
0 years, male, NA, stage:2, alive, 600 days
20.3
DO50793
0 years, male, NA, stage:4, alive, 540 days
20.2
DO23530
0 years, male, NA, stage:4, dead, 180 days
20.2
DO48693
0 years, male, NA, stage:2, alive, 900 days
20.2
DO45097
0 years, male, NA, stage:3, alive, 1620 days
20.0
DO48717
0 years, male, NA, stage:4, dead, 180 days
19.9
DO45251
0 years, female, NA, stage:2, alive, 900 days
19.8
DO45125
0 years, male, NA, stage:3, alive, 1680 days
19.5
DO45283
0 years, male, NA, stage:3, alive, 510 days
19.5
DO23542
0 years, male, NA, stage:3, alive, 960 days
19.0
DO23524
0 years, female, NA, stage:2, alive, 1050 days
18.8
DO45225
0 years, male, NA, stage:1, alive, 1050 days
18.8
DO45135
0 years, male, NA, stage:1, alive, 1410 days
18.7
DO45093
0 years, male, NA, stage:2, dead, 720 days
18.7
DO227801
0 years, female, NA, stage:1, alive, 660 days
18.5
DO45227
0 years, female, NA, stage:2, alive, 1020 days
18.4
DO45157
0 years, male, NA, stage:2, alive, 1980 days
18.3
DO48728
0 years, female, NA, stage:2, alive, 150 days
18.2
DO45277
0 years, male, NA, stage:3, alive, 600 days
18.1
DO50859
0 years, male, NA, stage:2, alive, 180 days
17.6
DO50787
0 years, male, NA, stage:3, alive, 480 days
17.5
DO45181
0 years, female, NA, stage:2, alive, 1200 days
17.4
DO48760
0 years, female, NA, stage:2, alive, 690 days
17.3
DO45175
0 years, male, NA, stage:2, alive, 1140 days
17.3
DO48716
0 years, male, NA, stage:2, alive, 720 days
17.2
DO23511
0 years, female, NA, stage:3, dead, 180 days
17.0
DO45177
0 years, female, NA, stage:3, alive, 1260 days
16.8
DO50813
0 years, male, NA, stage:2, alive, 420 days
16.5
DO45207
0 years, male, NA, stage:1, alive, 1050 days
16.5
DO48701
0 years, male, NA, stage:2, alive, 780 days
16.3
DO45247
0 years, female, NA, stage:2, alive, 210 days
16.2
DO45155
0 years, male, NA, stage:2, alive, 2160 days
16.1
DO45193
0 years, female, NA, stage:4, dead, 120 days
15.9
DO23521
0 years, male, NA, stage:3, alive, 1110 days
15.7
DO45149
0 years, female, NA, stage:2, alive, 1260 days
15.6
DO23536
0 years, male, NA, stage:2, alive, 930 days
15.4
DO50850
0 years, male, NA, stage:3, alive, 720 days
15.3
DO45221
0 years, female, NA, stage:4, dead, 390 days
15.2
DO45261
0 years, male, NA, stage:3, alive, 990 days
15.1
DO23544
0 years, male, NA, stage:2, alive, 960 days
14.9
DO50857
0 years, male, NA, stage:2, alive, 210 days
14.8
DO23541
0 years, male, NA, stage:2, alive, 930 days
14.7
DO48679
0 years, male, NA, stage:2, alive, 1200 days
14.7
DO45199
0 years, female, NA, stage:2, alive, 1350 days
14.7
DO45223
0 years, male, NA, stage:4, alive, 1020 days
14.4
DO45113
0 years, male, NA, stage:3, alive, 1560 days
14.3
DO48681
0 years, male, NA, stage:2, alive, 900 days
14.2
DO23531
0 years, female, NA, stage:3, alive, 900 days
13.7
DO45169
0 years, male, NA, stage:3, alive, 1350 days
13.4
DO45137
0 years, male, NA, stage:1, alive, 1320 days
13.3
DO50808
0 years, male, NA, stage:2, alive, 570 days
13.1
DO45205
0 years, female, NA, stage:2, dead, 90 days
13.1
DO45091
0 years, male, NA, stage:2, dead, 1320 days
13.0
DO23509
0 years, male, NA, stage:3, dead, 780 days
12.9
DO48721
0 years, female, NA, stage:1, alive, 900 days
12.8
DO23551
0 years, male, NA, stage:3, dead, 150 days
12.4
DO23552
0 years, female, NA, stage:1, alive, 810 days
12.1
DO50832
0 years, male, NA, stage:3, alive, 90 days
11.9
DO48746
0 years, male, NA, stage:3, alive, 570 days
11.8
DO50819
0 years, female, NA, stage:2, alive, 510 days
11.8
DO45233
0 years, male, NA, stage:3, alive, 900 days
11.6
DO45131
0 years, male, NA, stage:4, dead, 360 days
11.5
DO23538
0 years, male, NA, stage:2, alive, 450 days
10.7
DO23534
0 years, male, NA, stage:2, alive, 840 days
10.5
DO45245
0 years, female, NA, stage:2, dead, 240 days
9.9
DO45285
0 years, male, NA, stage:3, alive, 480 days
9.6
DO48741
0 years, male, NA, stage:3, alive, 240 days
8.9
DO50774
0 years, female, NA, stage:2, alive, 720 days
8.5
DO23513
0 years, male, NA, stage:3, alive, 1200 days
8.1
DO45237
0 years, male, NA, stage:2, alive, 900 days
6.7
DO45119
0 years, male, NA, stage:3, dead, 510 days
5.2
DO45111
0 years, male, NA, stage:2, alive, 1590 days
4.2
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
473
Tumor
1.4
743
Tumor
1.4
1041
Tumor
1.2
571
Tumor
1.1
227
Tumor
1.0
477
Tumor
1.0
351
Tumor
1.0
331
Tumor
0.9
171
Tumor
0.9
951
Tumor
0.9
363
Tumor
0.9
435
Tumor
0.9
967
Tumor
0.9
517
Tumor
0.8
367
Tumor
0.8
815
Tumor
0.7
525
Tumor
0.7
537
Tumor
0.7
185
Tumor
0.7
883
Tumor
0.6
391
Tumor
0.6
671
Tumor
0.6
1021
Tumor
0.6
685
Tumor
0.6
925
Tumor
0.6
361
Tumor
0.6
937
Tumor
0.6
715
Tumor
0.5
911
Tumor
0.5
823
Tumor
0.5
211
Tumor
0.5
741
Tumor
0.5
463
Tumor
0.5
483
Tumor
0.5
341
Tumor
0.5
921
Tumor
0.5
357
Tumor
0.5
865
Tumor
0.5
423
Tumor
0.5
471
Tumor
0.5
277
Tumor
0.5
713
Tumor
0.5
223
Tumor
0.4
127
Tumor
0.4
953
Tumor
0.4
915
Tumor
0.4
557
Tumor
0.4
431
Tumor
0.4
533
Tumor
0.4
311
Tumor
0.4
745
Tumor
0.3
1025
Tumor
0.3
137
Tumor
0.3
385
Tumor
0.3
861
Tumor
0.3
355
Tumor
0.3
411
Tumor
0.3
353
Tumor
0.3
755
Tumor
0.3
567
Tumor
0.3
443
Tumor
0.3
721
Tumor
0.3
231
Tumor
0.3
465
Tumor
0.3
695
Tumor
0.2
665
Tumor
0.2
393
Tumor
0.2
635
Tumor
0.2
698
Normal
0.2
641
Tumor
0.2
271
Tumor
0.2
661
Tumor
0.2
877
Tumor
0.2
914
Normal
0.2
1046
Normal
0.2
267
Tumor
0.2
878
Normal
0.2
617
Tumor
0.2
147
Tumor
0.2
963
Tumor
0.2
493
Tumor
0.2
413
Tumor
0.2
145
Tumor
0.2
365
Tumor
0.2
981
Tumor
0.1
965
Tumor
0.1
913
Tumor
0.1
135
Tumor
0.1
983
Tumor
0.1
421
Tumor
0.1
923
Tumor
0.1
297
Tumor
0.1
663
Tumor
0.1
817
Tumor
0.1
132
Normal
0.1
213
Tumor
0.1
882
Normal
0.1
455
Tumor
0.1
916
Normal
0.1
553
Tumor
0.1
451
Tumor
0.1
491
Tumor
0.1
342
Normal
0.1
161
Tumor
0.1
728
Normal
0.1
388
Normal
0.1
113
Tumor
0.0
647
Tumor
0.0
444
Normal
0.0
546
Normal
0.0
976
Normal
0.0
448
Normal
0.0
535
Tumor
0.0
1031
Tumor
0.0
395
Tumor
0.0
452
Normal
0.0
563
Tumor
0.0
1027
Tumor
0.0
867
Tumor
0.0
445
Tumor
0.0
196
Normal
0.0
1032
Normal
0.0
222
Normal
0.0
648
Normal
0.0
926
Normal
0.0
142
Normal
0.0
881
Tumor
0.0
112
Tumor
0.0
1045
Tumor
0.0
446
Normal
0.0
136
Normal
0.0
358
Normal
0.0
285
Tumor
0.0
436
Normal
0.0
742
Normal
0.0
456
Normal
0.0
432
Normal
0.0
534
Normal
0.0
724
Normal
0.0
958
Normal
0.0
662
Normal
0.0
573
Tumor
-0.1
187
Tumor
-0.1
396
Normal
-0.1
434
Normal
-0.1
482
Normal
-0.1
816
Normal
-0.1
1022
Normal
-0.1
128
Normal
-0.1
364
Normal
-0.1
387
Tumor
-0.1
138
Normal
-0.1
462
Normal
-0.1
554
Normal
-0.1
344
Normal
-0.1
214
Normal
-0.1
1043
Tumor
-0.1
873
Tumor
-0.1
664
Normal
-0.1
481
Tumor
-0.1
975
Tumor
-0.1
642
Normal
-0.1
516
Normal
-0.1
572
Normal
-0.1
394
Normal
-0.1
312
Normal
-0.1
922
Normal
-0.1
468
Normal
-0.1
982
Normal
-0.1
257
Tumor
-0.1
866
Normal
-0.1
964
Normal
-0.1
824
Normal
-0.1
568
Normal
-0.1
938
Normal
-0.1
851
Tumor
-0.1
818
Normal
-0.1
864
Normal
-0.1
968
Normal
-0.1
785
Tumor
-0.1
283
Tumor
-0.1
616
Normal
-0.1
422
Normal
-0.1
356
Normal
-0.1
314
Normal
-0.1
412
Normal
-0.1
386
Normal
-0.1
1014
Normal
-0.1
722
Normal
-0.1
221
Tumor
-0.1
478
Normal
-0.1
474
Normal
-0.1
636
Normal
-0.1
284
Normal
-0.1
427
Tumor
-0.1
1013
Tumor
-0.2
956
Normal
-0.2
944
Normal
-0.2
984
Normal
-0.2
464
Normal
-0.2
884
Normal
-0.2
313
Tumor
-0.2
852
Normal
-0.2
858
Normal
-0.2
918
Normal
-0.2
416
Normal
-0.2
696
Normal
-0.2
433
Tumor
-0.2
738
Normal
-0.2
1044
Normal
-0.2
328
Normal
-0.2
298
Normal
-0.2
978
Normal
-0.2
924
Normal
-0.2
666
Normal
-0.2
192
Normal
-0.2
332
Normal
-0.2
228
Normal
-0.2
943
Tumor
-0.2
272
Normal
-0.2
114
Normal
-0.2
977
Tumor
-0.2
131
Tumor
-0.2
524
Normal
-0.2
212
Normal
-0.2
123
Tumor
-0.2
362
Normal
-0.2
424
Normal
-0.2
527
Tumor
-0.2
366
Normal
-0.2
697
Tumor
-0.2
261
Tumor
-0.2
518
Normal
-0.2
874
Normal
-0.2
528
Normal
-0.2
447
Tumor
-0.2
258
Normal
-0.2
492
Normal
-0.2
467
Tumor
-0.2
494
Normal
-0.2
368
Normal
-0.2
376
Normal
-0.2
125
Tumor
-0.3
278
Normal
-0.3
146
Normal
-0.3
716
Normal
-0.3
618
Normal
-0.3
186
Normal
-0.3
862
Normal
-0.3
917
Tumor
-0.3
966
Normal
-0.3
217
Tumor
-0.3
392
Normal
-0.3
957
Tumor
-0.3
415
Tumor
-0.3
466
Normal
-0.3
195
Tumor
-0.3
672
Normal
-0.3
723
Tumor
-0.3
1042
Normal
-0.3
428
Normal
-0.3
488
Normal
-0.3
814
Normal
-0.3
536
Normal
-0.3
126
Normal
-0.3
111
Normal
-0.3
786
Normal
-0.3
514
Normal
-0.3
472
Normal
-0.3
564
Normal
-0.3
232
Normal
-0.3
124
Normal
-0.3
218
Normal
-0.3
868
Normal
-0.3
714
Normal
-0.3
327
Tumor
-0.3
224
Normal
-0.3
558
Normal
-0.3
354
Normal
-0.3
526
Normal
-0.3
954
Normal
-0.3
952
Normal
-0.3
727
Tumor
-0.3
414
Normal
-0.3
461
Tumor
-0.3
426
Normal
-0.3
375
Tumor
-0.4
1028
Normal
-0.4
141
Tumor
-0.4
777
Tumor
-0.4
188
Normal
-0.4
1015
Tumor
-0.4
538
Normal
-0.4
857
Tumor
-0.4
744
Normal
-0.4
737
Tumor
-0.4
778
Normal
-0.4
1016
Normal
-0.4
497
Tumor
-0.4
162
Normal
-0.4
487
Tumor
-0.4
746
Normal
-0.4
863
Tumor
-0.4
352
Normal
-0.4
383
Tumor
-0.4
148
Normal
-0.4
756
Normal
-0.4
523
Tumor
-0.5
484
Normal
-0.5
262
Normal
-0.5
686
Normal
-0.5
912
Normal
-0.5
813
Tumor
-0.5
615
Tumor
-0.5
628
Normal
-0.5
955
Tumor
-0.5
384
Normal
-0.5
1026
Normal
-0.5
498
Normal
-0.5
286
Normal
-0.5
425
Tumor
-0.5
574
Normal
-0.6
545
Tumor
-0.6
627
Tumor
-0.6
172
Normal
-0.6
191
Tumor
-0.6
268
Normal
-0.6
343
Tumor
-0.7
513
Tumor
-0.8
515
Tumor
-1.0
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
