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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
HABP2 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
128.0
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
771.6
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
657.4
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
535.1
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
512.8
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
481.9
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
470.7
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
464.0
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
456.8
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
449.7
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
446.8
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
432.4
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
413.3
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
412.4
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
406.9
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
377.0
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
374.1
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
366.3
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
344.6
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
320.5
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
313.1
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
311.8
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
308.9
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
304.5
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
301.1
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
297.6
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
295.5
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
290.0
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
284.6
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
283.4
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
278.9
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
278.4
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
277.0
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
273.5
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
271.2
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
262.4
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
261.7
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
261.5
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
258.9
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
257.3
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
257.1
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
256.7
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
255.4
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
253.9
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
253.3
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
253.2
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
250.3
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
245.1
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
245.1
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
235.5
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
232.4
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
230.1
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
229.5
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
229.1
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
226.7
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
225.5
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
221.8
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
221.3
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
221.1
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
221.0
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
218.3
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
217.1
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
214.2
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
209.5
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
208.7
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
206.9
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
206.9
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
205.2
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
201.8
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
201.4
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
201.1
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
199.4
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
198.7
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
198.5
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
196.2
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
194.9
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
193.1
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
192.9
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
191.4
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
191.0
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
189.2
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
188.2
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
186.1
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
185.8
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
184.0
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
183.4
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
182.3
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
181.9
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
181.6
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
181.2
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
180.4
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
180.3
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
174.9
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
174.2
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
173.3
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
170.9
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
170.5
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
169.8
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
167.9
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
167.7
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
167.2
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
165.4
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
162.4
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
162.0
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
160.0
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
158.6
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
157.8
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
155.8
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
155.7
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
155.6
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
155.5
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
154.8
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
154.3
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
154.0
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
153.2
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
152.5
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
150.9
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
150.9
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
150.6
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
149.7
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
149.5
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
148.4
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
148.3
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
147.2
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
146.7
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
145.9
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
145.7
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
145.6
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
145.3
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
144.2
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
143.6
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
143.2
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
141.6
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
140.7
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
140.4
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
138.9
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
138.8
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
138.7
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
137.8
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
137.2
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
135.4
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
132.5
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
130.8
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
129.4
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
129.0
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
128.7
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
128.7
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
127.4
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
125.6
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
125.0
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
124.7
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
124.4
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
124.1
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
123.8
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
123.2
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
121.9
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
121.5
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
121.3
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
121.0
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
119.9
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
119.2
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
119.1
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
118.2
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
116.9
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
116.5
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
114.8
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
114.5
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
112.8
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
112.7
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
112.2
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
111.8
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
111.8
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
109.9
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
109.9
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
109.7
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
109.7
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
109.5
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
109.2
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
109.1
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
107.7
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
105.4
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
104.9
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
104.4
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
102.7
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
101.9
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
101.5
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
101.3
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
101.3
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
100.0
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
99.7
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
99.2
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
97.7
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
97.5
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
97.1
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
96.9
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
95.4
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
95.3
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
94.2
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
93.4
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
93.0
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
89.9
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
89.7
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
88.5
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
87.7
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
87.7
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
87.6
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
87.3
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
86.9
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
86.7
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
86.0
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
85.4
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
84.9
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
84.7
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
84.2
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
84.0
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
82.8
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
82.5
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
82.3
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
82.3
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
82.2
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
81.6
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
81.1
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
80.9
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
79.0
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
78.5
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
78.0
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
77.3
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
76.7
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
75.8
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
75.1
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
74.9
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
74.2
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
73.5
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
73.3
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
72.4
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
71.9
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
71.2
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
71.2
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
71.0
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
71.0
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
70.4
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
70.2
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
69.8
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
69.1
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
68.8
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
67.8
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
67.6
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
65.8
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
65.7
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
65.7
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
65.6
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
63.5
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
63.1
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
62.7
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
61.1
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
60.8
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
60.0
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
57.3
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
56.7
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
55.8
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
54.8
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
53.3
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
52.6
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
52.5
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
52.4
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
51.8
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
51.0
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
50.8
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
49.4
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
48.2
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
48.0
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
47.9
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
47.2
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
46.2
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
45.7
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
45.6
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
45.6
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
43.8
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
43.5
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
43.1
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
42.3
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
42.3
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
41.0
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
40.6
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
40.4
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
40.2
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
40.2
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
38.9
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
37.9
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
37.1
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
36.9
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
36.7
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
35.2
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
34.6
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
34.1
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
33.5
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
33.1
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
31.5
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
31.1
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
29.4
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
27.5
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
27.2
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
26.5
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
25.7
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
25.5
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
25.0
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
24.5
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
21.9
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
21.4
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
19.9
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
19.7
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
19.4
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
18.9
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
18.9
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
18.6
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
18.4
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
17.8
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
15.9
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
15.9
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
14.4
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
14.4
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
13.6
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
13.6
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
13.5
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
13.2
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
12.8
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
11.5
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
11.2
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
8.9
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
8.6
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
7.7
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
7.5
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
7.3
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
6.6
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
6.6
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
6.5
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
5.4
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
4.6
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
3.9
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
3.7
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
3.4
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
2.9
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
2.9
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
2.2
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
2.1
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
2.0
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
1.8
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
1.3
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
1.1
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
1.0
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
0.9
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
0.5
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
0.5
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
0.3
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
0.3
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
0.3
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
0.2
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
0.2
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
0.2
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
0.2
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
0.1
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
0.1
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
HABP2 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
117.7
Number of samples
231
Samples
Sample
Description
TPM
DO45275
0 years, male, NA, stage:3, dead, 10 days
817.6
DO45259
0 years, male, NA, stage:3, alive, 330 days
760.6
DO45303
0 years, female, NA, stage:3, alive, 990 days
757.0
DO45283
0 years, male, NA, stage:3, alive, 510 days
559.7
DO48761
0 years, male, NA, stage:2, alive, 870 days
448.9
DO45185
0 years, male, NA, stage:2, alive, 600 days
401.9
DO50807
0 years, male, NA, stage:1, alive, 540 days
360.2
DO50855
0 years, male, NA, stage:2, alive, 570 days
320.9
DO50789
0 years, female, NA, stage:2, alive, 570 days
291.6
DO45191
0 years, female, NA, stage:2, alive, 1200 days
280.6
DO45219
0 years, male, NA, stage:2, alive, 1080 days
275.6
DO50845
0 years, male, NA, stage:3, alive, 210 days
269.7
DO48732
0 years, male, NA, stage:3, alive, 630 days
268.5
DO45183
0 years, female, NA, stage:2, dead, 570 days
254.9
DO45096
0 years, male, NA, stage:2, dead, 1290 days
239.3
DO48760
0 years, female, NA, stage:2, alive, 690 days
239.1
DO45243
0 years, female, NA, stage:3, alive, 930 days
237.5
DO45113
0 years, male, NA, stage:3, alive, 1560 days
236.1
DO45115
0 years, male, NA, stage:2, alive, 840 days
234.5
DO23524
0 years, female, NA, stage:2, alive, 1050 days
233.8
DO23552
0 years, female, NA, stage:1, alive, 810 days
232.6
DO48743
0 years, female, NA, stage:2, alive, 570 days
230.4
DO50820
0 years, female, NA, stage:3, alive, 510 days
228.6
DO45189
0 years, female, NA, stage:2, alive, 1200 days
227.6
DO45167
0 years, male, NA, stage:2, dead, 1440 days
221.0
DO45101
0 years, male, NA, stage:2, alive, 1680 days
216.7
DO50829
0 years, male, NA, stage:3, alive, 570 days
213.9
DO23544
0 years, male, NA, stage:2, alive, 960 days
213.4
DO45205
0 years, female, NA, stage:2, dead, 90 days
210.0
DO45105
0 years, male, NA, stage:1, alive, 1680 days
208.8
DO48728
0 years, female, NA, stage:2, alive, 150 days
206.2
DO45223
0 years, male, NA, stage:4, alive, 1020 days
205.1
DO45235
0 years, female, NA, stage:1, alive, 900 days
203.8
DO45159
0 years, male, NA, stage:3, alive, 1470 days
202.5
DO23541
0 years, male, NA, stage:2, alive, 930 days
200.5
DO45137
0 years, male, NA, stage:1, alive, 1320 days
197.6
DO23538
0 years, male, NA, stage:2, alive, 450 days
197.2
DO45249
0 years, male, NA, stage:1, alive, 630 days
195.2
DO45153
0 years, female, NA, stage:2, alive, 1380 days
188.0
DO48736
0 years, female, NA, stage:1, alive, 600 days
181.1
DO50844
0 years, male, NA, stage:4, alive, 300 days
180.2
DO45289
0 years, female, NA, stage:3, alive, 360 days
179.1
DO45109
0 years, male, NA, stage:2, alive, 1590 days
177.8
DO23509
0 years, male, NA, stage:3, dead, 780 days
176.6
DO23550
0 years, male, NA, stage:1, alive, 990 days
176.3
DO48742
0 years, male, NA, stage:2, alive, 600 days
174.8
DO48725
0 years, male, NA, stage:1, alive, 780 days
172.2
DO45107
0 years, female, NA, stage:2, alive, 1710 days
171.9
DO45215
0 years, male, NA, stage:2, alive, 1170 days
170.7
DO45305
0 years, male, NA, stage:4, alive, 300 days
169.3
DO48717
0 years, male, NA, stage:4, dead, 180 days
168.4
DO23518
0 years, male, NA, stage:2, alive, 1320 days
168.4
DO45119
0 years, male, NA, stage:3, dead, 510 days
168.1
DO45225
0 years, male, NA, stage:1, alive, 1050 days
166.2
DO45103
0 years, male, NA, stage:3, alive, 450 days
166.1
DO23527
0 years, male, NA, stage:1, alive, 1050 days
165.0
DO23537
0 years, male, NA, stage:2, dead, 900 days
162.4
DO45247
0 years, female, NA, stage:2, alive, 210 days
160.8
DO45239
0 years, male, NA, stage:2, alive, 870 days
160.4
DO45187
0 years, female, NA, stage:1, alive, 1260 days
157.7
DO45195
0 years, male, NA, stage:1, alive, 390 days
156.6
DO48712
0 years, male, NA, stage:2, alive, 810 days
155.0
DO23510
0 years, female, NA, stage:2, alive, 870 days
152.3
DO45255
0 years, male, NA, stage:3, alive, 720 days
151.8
DO23531
0 years, female, NA, stage:3, alive, 900 days
150.8
DO23526
0 years, male, NA, stage:3, alive, 1050 days
150.6
DO45149
0 years, female, NA, stage:2, alive, 1260 days
146.2
DO45094
0 years, male, NA, stage:3, alive, 1650 days
146.0
DO227801
0 years, female, NA, stage:1, alive, 660 days
144.4
DO23551
0 years, male, NA, stage:3, dead, 150 days
143.5
DO45213
0 years, male, NA, stage:1, alive, 1200 days
143.4
DO45227
0 years, female, NA, stage:2, alive, 1020 days
142.2
DO50787
0 years, male, NA, stage:3, alive, 480 days
141.0
DO23515
0 years, male, NA, stage:2, alive, 1230 days
138.6
DO45203
0 years, female, NA, stage:2, alive, 1170 days
135.4
DO48674
0 years, male, NA, stage:2, alive, 1260 days
134.3
DO45135
0 years, male, NA, stage:1, alive, 1410 days
134.2
DO45179
0 years, female, NA, stage:2, alive, 600 days
133.5
DO45099
0 years, male, NA, stage:3, alive, 1590 days
133.3
DO45092
0 years, male, NA, stage:4, dead, 1200 days
131.9
DO48730
0 years, female, NA, stage:2, alive, 630 days
131.4
DO48716
0 years, male, NA, stage:2, alive, 720 days
130.1
DO45209
0 years, male, NA, stage:4, alive, 1350 days
126.7
DO23535
0 years, male, NA, stage:1, alive, 960 days
126.3
DO45157
0 years, male, NA, stage:2, alive, 1980 days
125.7
DO45231
0 years, male, NA, stage:2, alive, 930 days
124.0
DO45229
0 years, male, NA, stage:1, alive, 990 days
123.4
DO50793
0 years, male, NA, stage:4, alive, 540 days
122.8
DO23511
0 years, female, NA, stage:3, dead, 180 days
121.6
DO45121
0 years, male, NA, stage:3, alive, 1530 days
120.0
DO50776
0 years, male, NA, stage:1, alive, 690 days
119.8
DO23540
0 years, male, NA, stage:1, alive, 750 days
119.5
DO45201
0 years, male, NA, stage:1, alive, 900 days
119.0
DO45233
0 years, male, NA, stage:3, alive, 900 days
118.8
DO50825
0 years, male, NA, stage:2, alive, 390 days
118.6
DO50816
0 years, male, NA, stage:2, alive, 390 days
118.0
DO48700
0 years, female, NA, stage:2, alive, 810 days
117.9
DO23517
0 years, male, NA, stage:2, alive, 1200 days
117.0
DO48704
0 years, female, NA, stage:3, alive, 750 days
116.3
DO45181
0 years, female, NA, stage:2, alive, 1200 days
115.4
DO45131
0 years, male, NA, stage:4, dead, 360 days
114.5
DO50818
0 years, male, NA, stage:2, alive, 510 days
114.4
DO45265
0 years, male, NA, stage:3, alive, 1020 days
113.6
DO45111
0 years, male, NA, stage:2, alive, 1590 days
113.5
DO50850
0 years, male, NA, stage:3, alive, 720 days
111.9
DO50785
0 years, male, NA, stage:4, dead, 90 days
111.3
DO50808
0 years, male, NA, stage:2, alive, 570 days
110.3
DO48733
0 years, male, NA, stage:2, alive, 600 days
109.2
DO45143
0 years, male, NA, stage:3, alive, 1290 days
109.0
DO50803
0 years, female, NA, stage:1, alive, 540 days
108.4
DO45207
0 years, male, NA, stage:1, alive, 1050 days
107.8
DO50805
0 years, male, NA, stage:2, alive, 690 days
106.9
DO23508
0 years, female, NA, stage:2, alive, 390 days
106.8
DO50819
0 years, female, NA, stage:2, alive, 510 days
106.0
DO50817
0 years, male, NA, stage:2, alive, 390 days
105.6
DO48695
0 years, male, NA, stage:2, alive, 720 days
103.3
DO45253
0 years, male, NA, stage:2, alive, 870 days
100.9
DO50832
0 years, male, NA, stage:3, alive, 90 days
100.4
DO45241
0 years, male, NA, stage:1, alive, 1080 days
100.0
DO48697
0 years, female, NA, stage:2, dead, 810 days
98.3
DO45237
0 years, male, NA, stage:2, alive, 900 days
97.8
DO48701
0 years, male, NA, stage:2, alive, 780 days
96.4
DO45173
0 years, male, NA, stage:3, alive, 1170 days
95.8
DO48720
0 years, female, NA, stage:2, alive, 570 days
91.3
DO23521
0 years, male, NA, stage:3, alive, 1110 days
89.6
DO45125
0 years, male, NA, stage:3, alive, 1680 days
88.2
DO23528
0 years, female, NA, stage:2, alive, 1020 days
87.5
DO50840
0 years, male, NA, stage:2, alive, 330 days
84.7
DO45263
0 years, male, NA, stage:3, dead, 270 days
83.8
DO50774
0 years, female, NA, stage:2, alive, 720 days
83.0
DO45093
0 years, male, NA, stage:2, dead, 720 days
82.8
DO45141
0 years, male, NA, stage:2, alive, 1320 days
82.4
DO23532
0 years, female, NA, stage:1, alive, 960 days
81.8
DO45091
0 years, male, NA, stage:2, dead, 1320 days
80.7
DO45221
0 years, female, NA, stage:4, dead, 390 days
80.6
DO50857
0 years, male, NA, stage:2, alive, 210 days
80.3
DO45261
0 years, male, NA, stage:3, alive, 990 days
79.6
DO227643
0 years, male, NA, stage:2, alive, 1260 days
78.2
DO45177
0 years, female, NA, stage:3, alive, 1260 days
76.6
DO50813
0 years, male, NA, stage:2, alive, 420 days
76.0
DO45095
0 years, male, NA, stage:2, alive, 1620 days
75.0
DO45139
0 years, male, NA, stage:3, alive, 1320 days
74.6
DO48682
0 years, female, NA, stage:3, dead, 120 days
73.9
DO45269
0 years, male, NA, stage:3, alive, 750 days
72.3
DO50804
0 years, male, NA, stage:2, alive, 720 days
71.3
DO50809
0 years, male, NA, stage:3, dead, 720 days
70.5
DO48751
0 years, male, NA, stage:2, dead, 480 days
70.1
DO45199
0 years, female, NA, stage:2, alive, 1350 days
69.9
DO48741
0 years, male, NA, stage:3, alive, 240 days
68.8
DO23525
0 years, male, NA, stage:4, alive, 1050 days
68.3
DO45117
0 years, female, NA, stage:2, dead, 1110 days
67.7
DO50778
0 years, male, NA, stage:4, alive, 630 days
67.5
DO23545
0 years, male, NA, stage:2, dead, 570 days
67.1
DO23536
0 years, male, NA, stage:2, alive, 930 days
66.0
DO45165
0 years, male, NA, stage:2, alive, 690 days
63.9
DO48727
0 years, female, NA, stage:2, dead, 390 days
63.7
DO48681
0 years, male, NA, stage:2, alive, 900 days
63.3
DO50783
0 years, male, NA, stage:3, alive, 480 days
63.0
DO50800
0 years, male, NA, stage:2, alive, 510 days
60.8
DO50839
0 years, female, NA, stage:3, alive, 330 days
58.8
DO23519
0 years, male, NA, stage:3, alive, 630 days
56.9
DO45161
0 years, male, NA, stage:2, dead, 540 days
56.5
DO23546
0 years, male, NA, stage:2, alive, 1050 days
54.4
DO50815
0 years, male, NA, stage:3, alive, 150 days
54.0
DO50806
0 years, male, NA, stage:4, alive, 540 days
53.9
DO45257
0 years, male, NA, stage:3, alive, 810 days
52.6
DO48721
0 years, female, NA, stage:1, alive, 900 days
51.2
DO48715
0 years, female, NA, stage:2, dead, 690 days
51.0
DO23512
0 years, male, NA, stage:1, alive, 1260 days
50.7
DO45123
0 years, female, NA, stage:2, dead, 570 days
50.4
DO48677
0 years, male, NA, stage:3, alive, 1140 days
50.3
DO45169
0 years, male, NA, stage:3, alive, 1350 days
50.1
DO23543
0 years, male, NA, stage:2, alive, 1020 days
48.2
DO48719
0 years, male, NA, stage:2, alive, 690 days
47.3
DO23534
0 years, male, NA, stage:2, alive, 840 days
46.3
DO45127
0 years, male, NA, stage:3, dead, 420 days
45.1
DO23516
0 years, male, NA, stage:3, dead, 20 days
42.7
DO45129
0 years, male, NA, stage:3, alive, 1470 days
42.6
DO48747
0 years, male, NA, stage:3, alive, 540 days
39.4
DO50859
0 years, male, NA, stage:2, alive, 180 days
37.3
DO23530
0 years, male, NA, stage:4, dead, 180 days
36.6
DO45145
0 years, male, NA, stage:3, dead, 60 days
34.6
DO48723
0 years, male, NA, stage:1, alive, 600 days
31.9
DO45273
0 years, male, NA, stage:2, alive, 480 days
31.2
DO48693
0 years, male, NA, stage:2, alive, 900 days
31.0
DO45197
0 years, male, NA, stage:2, alive, 1170 days
30.2
DO48672
0 years, male, NA, stage:2, alive, 450 days
27.9
DO50822
0 years, male, NA, stage:2, alive, 510 days
27.7
DO50798
0 years, male, NA, stage:3, dead, 30 days
26.4
DO50791
0 years, female, NA, stage:1, dead, 480 days
23.7
DO48759
0 years, male, NA, stage:3, alive, 720 days
22.1
DO23549
0 years, male, NA, stage:3, alive, 990 days
20.8
DO45133
0 years, male, NA, stage:3, dead, 660 days
20.4
DO45251
0 years, female, NA, stage:2, alive, 900 days
19.4
DO50811
0 years, male, NA, stage:1, alive, 450 days
19.3
DO48737
0 years, male, NA, stage:1, alive, 720 days
17.3
DO45307
0 years, female, NA, stage:4, dead, 240 days
17.0
DO45279
0 years, male, NA, stage:3, alive, 1290 days
15.4
DO45217
0 years, female, NA, stage:3, dead, 270 days
15.3
DO23514
0 years, male, NA, stage:2, alive, 1290 days
14.7
DO50802
0 years, male, NA, stage:2, alive, 930 days
14.3
DO50799
0 years, female, NA, stage:2, alive, 540 days
13.8
DO45281
0 years, male, NA, stage:4, alive, 750 days
12.4
DO45287
0 years, male, NA, stage:1, alive, 390 days
12.3
DO45301
0 years, male, NA, stage:2, dead, 1440 days
11.7
DO45285
0 years, male, NA, stage:3, alive, 480 days
10.0
DO48746
0 years, male, NA, stage:3, alive, 570 days
9.9
DO23539
0 years, male, NA, stage:1, alive, 1110 days
9.7
DO23513
0 years, male, NA, stage:3, alive, 1200 days
9.3
DO48757
0 years, female, NA, stage:3, alive, 480 days
8.8
DO45171
0 years, male, NA, stage:3, alive, 600 days
7.8
DO23548
0 years, female, NA, stage:1, alive, 840 days
6.0
DO23542
0 years, male, NA, stage:3, alive, 960 days
6.0
DO45277
0 years, male, NA, stage:3, alive, 600 days
5.1
DO23547
0 years, male, NA, stage:1, alive, 1020 days
4.8
DO45163
0 years, male, NA, stage:2, alive, 960 days
4.6
DO48679
0 years, male, NA, stage:2, alive, 1200 days
4.1
DO45193
0 years, female, NA, stage:4, dead, 120 days
3.9
DO45267
0 years, male, NA, stage:3, dead, 570 days
2.7
DO45155
0 years, male, NA, stage:2, alive, 2160 days
2.3
DO48706
0 years, male, NA, stage:2, alive, 870 days
2.1
DO45297
0 years, female, NA, stage:4, dead, 1260 days
2.0
DO45299
0 years, female, NA, stage:1, alive, 1440 days
1.1
DO50814
0 years, male, NA, stage:3, alive, 420 days
1.0
DO23533
0 years, male, NA, stage:2, alive, 900 days
1.0
DO45097
0 years, male, NA, stage:3, alive, 1620 days
0.9
DO45245
0 years, female, NA, stage:2, dead, 240 days
0.7
DO23529
0 years, male, NA, stage:4, alive, 930 days
0.5
DO23523
0 years, male, NA, stage:3, alive, 1080 days
0.1
DO45175
0 years, male, NA, stage:2, alive, 1140 days
0.1
DO45211
0 years, male, NA, stage:3, alive, 240 days
0.1
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
125
Tumor
2.3
313
Tumor
1.7
815
Tumor
1.7
343
Tumor
1.6
877
Tumor
1.5
131
Tumor
1.3
223
Tumor
1.3
975
Tumor
1.2
671
Tumor
1.2
737
Tumor
1.2
745
Tumor
1.2
983
Tumor
1.1
813
Tumor
1.1
545
Tumor
1.0
387
Tumor
1.0
1027
Tumor
1.0
921
Tumor
1.0
257
Tumor
0.9
953
Tumor
0.9
635
Tumor
0.9
523
Tumor
0.9
937
Tumor
0.8
817
Tumor
0.8
463
Tumor
0.8
615
Tumor
0.7
455
Tumor
0.6
147
Tumor
0.6
713
Tumor
0.6
285
Tumor
0.6
425
Tumor
0.6
393
Tumor
0.5
527
Tumor
0.5
881
Tumor
0.5
277
Tumor
0.5
661
Tumor
0.5
367
Tumor
0.5
785
Tumor
0.5
355
Tumor
0.4
617
Tumor
0.4
777
Tumor
0.4
385
Tumor
0.4
567
Tumor
0.3
535
Tumor
0.3
365
Tumor
0.3
851
Tumor
0.3
375
Tumor
0.3
533
Tumor
0.3
778
Normal
0.3
746
Normal
0.3
331
Tumor
0.3
497
Tumor
0.3
1025
Tumor
0.2
283
Tumor
0.2
297
Tumor
0.2
755
Tumor
0.2
554
Normal
0.2
135
Tumor
0.2
363
Tumor
0.2
113
Tumor
0.2
221
Tumor
0.2
925
Tumor
0.1
483
Tumor
0.1
923
Tumor
0.1
217
Tumor
0.1
471
Tumor
0.1
1045
Tumor
0.1
823
Tumor
0.1
697
Tumor
0.1
573
Tumor
0.1
328
Normal
0.1
267
Tumor
0.1
342
Normal
0.0
391
Tumor
0.0
452
Normal
0.0
192
Normal
0.0
137
Tumor
0.0
491
Tumor
0.0
271
Tumor
0.0
743
Tumor
0.0
636
Normal
0.0
142
Normal
0.0
413
Tumor
0.0
1021
Tumor
0.0
951
Tumor
0.0
957
Tumor
0.0
487
Tumor
0.0
218
Normal
0.0
641
Tumor
0.0
341
Tumor
0.0
816
Normal
0.0
443
Tumor
0.0
647
Tumor
0.0
537
Tumor
0.0
141
Tumor
-0.1
952
Normal
-0.1
465
Tumor
-0.1
392
Normal
-0.1
395
Tumor
-0.1
863
Tumor
-0.1
518
Normal
-0.1
187
Tumor
-0.1
866
Normal
-0.1
744
Normal
-0.1
695
Tumor
-0.1
515
Tumor
-0.1
956
Normal
-0.1
327
Tumor
-0.1
426
Normal
-0.1
721
Tumor
-0.1
421
Tumor
-0.1
722
Normal
-0.2
474
Normal
-0.2
227
Tumor
-0.2
364
Normal
-0.2
538
Normal
-0.2
493
Tumor
-0.2
132
Normal
-0.2
878
Normal
-0.2
727
Tumor
-0.2
967
Tumor
-0.2
938
Normal
-0.2
224
Normal
-0.2
314
Normal
-0.2
618
Normal
-0.2
145
Tumor
-0.2
386
Normal
-0.2
627
Tumor
-0.2
568
Normal
-0.2
472
Normal
-0.2
685
Tumor
-0.2
814
Normal
-0.2
461
Tumor
-0.2
546
Normal
-0.2
966
Normal
-0.2
415
Tumor
-0.2
111
Normal
-0.2
416
Normal
-0.2
258
Normal
-0.2
1028
Normal
-0.2
396
Normal
-0.2
914
Normal
-0.2
492
Normal
-0.2
298
Normal
-0.2
436
Normal
-0.3
574
Normal
-0.3
913
Tumor
-0.3
738
Normal
-0.3
358
Normal
-0.3
484
Normal
-0.3
232
Normal
-0.3
742
Normal
-0.3
663
Tumor
-0.3
964
Normal
-0.3
982
Normal
-0.3
353
Tumor
-0.3
388
Normal
-0.3
1016
Normal
-0.3
368
Normal
-0.3
686
Normal
-0.3
526
Normal
-0.3
344
Normal
-0.3
963
Tumor
-0.3
228
Normal
-0.3
874
Normal
-0.3
883
Tumor
-0.3
138
Normal
-0.3
394
Normal
-0.3
955
Tumor
-0.3
924
Normal
-0.3
376
Normal
-0.3
222
Normal
-0.3
286
Normal
-0.3
414
Normal
-0.3
312
Normal
-0.3
361
Tumor
-0.3
862
Normal
-0.3
981
Tumor
-0.3
553
Tumor
-0.3
412
Normal
-0.3
786
Normal
-0.3
188
Normal
-0.3
444
Normal
-0.3
126
Normal
-0.3
366
Normal
-0.3
213
Tumor
-0.3
272
Normal
-0.3
356
Normal
-0.3
557
Tumor
-0.3
714
Normal
-0.3
261
Tumor
-0.3
186
Normal
-0.3
432
Normal
-0.3
114
Normal
-0.3
462
Normal
-0.3
124
Normal
-0.3
572
Normal
-0.3
882
Normal
-0.4
696
Normal
-0.4
1043
Tumor
-0.4
196
Normal
-0.4
642
Normal
-0.4
1046
Normal
-0.4
648
Normal
-0.4
146
Normal
-0.4
268
Normal
-0.4
728
Normal
-0.4
494
Normal
-0.4
884
Normal
-0.4
1026
Normal
-0.4
278
Normal
-0.4
468
Normal
-0.4
311
Tumor
-0.4
428
Normal
-0.4
262
Normal
-0.4
524
Normal
-0.4
464
Normal
-0.4
446
Normal
-0.4
456
Normal
-0.4
148
Normal
-0.4
818
Normal
-0.4
517
Tumor
-0.4
136
Normal
-0.4
332
Normal
-0.4
558
Normal
-0.4
534
Normal
-0.4
434
Normal
-0.4
488
Normal
-0.4
968
Normal
-0.4
513
Tumor
-0.4
716
Normal
-0.4
161
Tumor
-0.4
162
Normal
-0.4
616
Normal
-0.4
423
Tumor
-0.4
698
Normal
-0.4
214
Normal
-0.4
447
Tumor
-0.4
411
Tumor
-0.4
525
Tumor
-0.4
965
Tumor
-0.4
481
Tumor
-0.4
664
Normal
-0.4
128
Normal
-0.4
422
Normal
-0.5
868
Normal
-0.5
466
Normal
-0.5
212
Normal
-0.5
351
Tumor
-0.5
864
Normal
-0.5
918
Normal
-0.5
171
Tumor
-0.5
448
Normal
-0.5
516
Normal
-0.5
915
Tumor
-0.5
1042
Normal
-0.5
445
Tumor
-0.5
433
Tumor
-0.5
195
Tumor
-0.5
354
Normal
-0.5
564
Normal
-0.5
628
Normal
-0.5
723
Tumor
-0.5
536
Normal
-0.5
284
Normal
-0.5
424
Normal
-0.5
824
Normal
-0.5
756
Normal
-0.5
477
Tumor
-0.5
666
Normal
-0.5
912
Normal
-0.5
467
Tumor
-0.5
451
Tumor
-0.5
741
Tumor
-0.5
362
Normal
-0.5
858
Normal
-0.5
672
Normal
-0.5
662
Normal
-0.5
1041
Tumor
-0.5
431
Tumor
-0.5
958
Normal
-0.6
865
Tumor
-0.6
383
Tumor
-0.6
571
Tumor
-0.6
1022
Normal
-0.6
112
Tumor
-0.6
563
Tumor
-0.6
482
Normal
-0.6
427
Tumor
-0.6
172
Normal
-0.6
514
Normal
-0.6
911
Tumor
-0.6
185
Tumor
-0.6
873
Tumor
-0.6
943
Tumor
-0.6
384
Normal
-0.6
857
Tumor
-0.6
1044
Normal
-0.6
976
Normal
-0.6
1013
Tumor
-0.6
926
Normal
-0.6
954
Normal
-0.6
352
Normal
-0.6
528
Normal
-0.7
922
Normal
-0.7
123
Tumor
-0.7
357
Tumor
-0.7
1014
Normal
-0.7
498
Normal
-0.7
191
Tumor
-0.7
917
Tumor
-0.7
1031
Tumor
-0.7
127
Tumor
-0.7
1015
Tumor
-0.7
916
Normal
-0.7
435
Tumor
-0.7
944
Normal
-0.7
478
Normal
-0.8
715
Tumor
-0.8
977
Tumor
-0.8
211
Tumor
-0.8
1032
Normal
-0.8
852
Normal
-0.8
231
Tumor
-0.8
867
Tumor
-0.8
473
Tumor
-0.8
984
Normal
-0.9
978
Normal
-0.9
665
Tumor
-0.9
861
Tumor
-1.0
724
Normal
-1.4
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.