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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
ADD3 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
6.7
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
54.3
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
45.9
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
43.0
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
40.5
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
37.0
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
36.0
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
28.1
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
28.1
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
27.2
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
27.0
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
24.0
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
22.9
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
21.3
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
19.5
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
19.4
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
18.6
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
18.5
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
18.3
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
18.1
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
17.8
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
17.6
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
17.4
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
17.1
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
16.9
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
16.6
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
16.6
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
16.4
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
16.4
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
15.5
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
15.4
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
15.3
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
14.9
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
14.9
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
14.7
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
14.4
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
14.3
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
14.2
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
14.2
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
13.5
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
13.5
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
13.4
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
13.3
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
13.3
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
13.3
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
13.1
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
12.9
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
12.7
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
12.6
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
12.4
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
12.3
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
12.2
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
12.2
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
11.8
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
11.7
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
11.6
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
11.4
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
11.4
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
11.3
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
11.3
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
11.1
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
11.1
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
11.0
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
10.9
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
10.8
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
10.7
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
10.5
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
10.5
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
10.3
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
10.2
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
10.2
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
10.2
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
10.0
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
9.6
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
9.6
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
9.5
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
9.5
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
9.5
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
9.5
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
9.4
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
9.4
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
9.3
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
9.2
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
9.2
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
9.2
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
9.1
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
9.0
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
8.9
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
8.9
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
8.8
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
8.7
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
8.6
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
8.6
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
8.5
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
8.5
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
8.5
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
8.3
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
8.3
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
8.3
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
8.3
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
8.2
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
8.2
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
8.1
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
8.1
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
8.0
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
7.9
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
7.9
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
7.9
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
7.9
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
7.9
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
7.8
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
7.7
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
7.7
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
7.7
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
7.7
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
7.6
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
7.6
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
7.5
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
7.4
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
7.3
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
7.2
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
7.1
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
7.1
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
7.0
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
6.9
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
6.9
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
6.9
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
6.7
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
6.7
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
6.7
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
6.7
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
6.6
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
6.6
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
6.5
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
6.5
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
6.5
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
6.5
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
6.4
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
6.4
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
6.4
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
6.4
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
6.4
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
6.3
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
6.2
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
6.2
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
6.2
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
6.1
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
6.0
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
6.0
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
5.9
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
5.9
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
5.9
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
5.8
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
5.8
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
5.7
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
5.7
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
5.7
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
5.6
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
5.6
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
5.5
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
5.4
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
5.4
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
5.3
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
5.3
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
5.2
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
5.1
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
5.1
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
5.0
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
5.0
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
5.0
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
4.9
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
4.9
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
4.9
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
4.9
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
4.9
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
4.8
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
4.8
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
4.8
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
4.7
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
4.6
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
4.5
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
4.5
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
4.4
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
4.4
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
4.4
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
4.4
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
4.4
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
4.3
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
4.3
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
4.2
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
4.2
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
4.2
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
4.1
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
4.1
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
4.1
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
4.1
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
4.0
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
4.0
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
4.0
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
4.0
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
4.0
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
4.0
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
3.9
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
3.9
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
3.9
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
3.9
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
3.9
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
3.9
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
3.8
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
3.8
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
3.8
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
3.8
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
3.8
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
3.8
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
3.8
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
3.7
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
3.6
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
3.5
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
3.5
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
3.5
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
3.4
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
3.4
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
3.4
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
3.4
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
3.3
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
3.3
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
3.3
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
3.3
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
3.3
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
3.2
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
3.2
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
3.2
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
3.2
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
3.2
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
3.2
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
3.1
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
3.1
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
3.1
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
3.0
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
2.9
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
2.9
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
2.9
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
2.9
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
2.9
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
2.9
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
2.8
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
2.8
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
2.7
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
2.7
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
2.7
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
2.7
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
2.6
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
2.6
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
2.6
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
2.6
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
2.6
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
2.5
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
2.5
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
2.5
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
2.5
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
2.5
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
2.4
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
2.4
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
2.4
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
2.3
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
2.3
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
2.3
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
2.3
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
2.3
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
2.3
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
2.3
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
2.2
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
2.2
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
2.2
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
2.2
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
2.2
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
2.2
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
2.2
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
2.2
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
2.1
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
2.1
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
2.1
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
2.0
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
2.0
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
2.0
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
2.0
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
2.0
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
2.0
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
2.0
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
1.9
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
1.9
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
1.9
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
1.9
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
1.9
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
1.9
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
1.9
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
1.8
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
1.8
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
1.7
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
1.7
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
1.7
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
1.7
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
1.6
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
1.6
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
1.6
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
1.6
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
1.6
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
1.6
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
1.6
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
1.6
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
1.6
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
1.5
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
1.5
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
1.5
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
1.5
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
1.4
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
1.4
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
1.4
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
1.4
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
1.3
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
1.3
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
1.3
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
1.3
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
1.2
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
1.2
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
1.2
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
1.2
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
1.2
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
1.1
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
1.1
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
1.1
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
1.0
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
1.0
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
1.0
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
1.0
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
0.9
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
0.9
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
0.9
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
0.9
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
0.9
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
0.8
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
0.8
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
0.8
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
0.8
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
0.7
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
0.7
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
0.7
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
0.7
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
0.7
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
0.7
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
0.7
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
0.6
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
0.6
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
0.6
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
0.6
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
0.6
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
0.6
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
0.5
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
0.5
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
0.4
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
0.4
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
0.3
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
ADD3 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
12.6
Number of samples
231
Samples
Sample
Description
TPM
DO45189
0 years, female, NA, stage:2, alive, 1200 days
70.2
DO45299
0 years, female, NA, stage:1, alive, 1440 days
62.9
DO45283
0 years, male, NA, stage:3, alive, 510 days
59.7
DO45127
0 years, male, NA, stage:3, dead, 420 days
44.9
DO23537
0 years, male, NA, stage:2, dead, 900 days
44.8
DO45287
0 years, male, NA, stage:1, alive, 390 days
44.4
DO50820
0 years, female, NA, stage:3, alive, 510 days
44.2
DO45297
0 years, female, NA, stage:4, dead, 1260 days
40.2
DO45301
0 years, male, NA, stage:2, dead, 1440 days
39.0
DO45245
0 years, female, NA, stage:2, dead, 240 days
37.8
DO45185
0 years, male, NA, stage:2, alive, 600 days
36.1
DO45279
0 years, male, NA, stage:3, alive, 1290 days
35.4
DO48757
0 years, female, NA, stage:3, alive, 480 days
32.2
DO45289
0 years, female, NA, stage:3, alive, 360 days
30.6
DO48720
0 years, female, NA, stage:2, alive, 570 days
29.8
DO45247
0 years, female, NA, stage:2, alive, 210 days
27.9
DO45265
0 years, male, NA, stage:3, alive, 1020 days
27.0
DO45219
0 years, male, NA, stage:2, alive, 1080 days
26.5
DO48728
0 years, female, NA, stage:2, alive, 150 days
25.9
DO45251
0 years, female, NA, stage:2, alive, 900 days
25.9
DO45187
0 years, female, NA, stage:1, alive, 1260 days
24.8
DO45139
0 years, male, NA, stage:3, alive, 1320 days
24.8
DO45105
0 years, male, NA, stage:1, alive, 1680 days
23.5
DO23552
0 years, female, NA, stage:1, alive, 810 days
23.4
DO23550
0 years, male, NA, stage:1, alive, 990 days
23.4
DO45213
0 years, male, NA, stage:1, alive, 1200 days
23.1
DO48712
0 years, male, NA, stage:2, alive, 810 days
22.7
DO50778
0 years, male, NA, stage:4, alive, 630 days
22.6
DO50799
0 years, female, NA, stage:2, alive, 540 days
22.1
DO45183
0 years, female, NA, stage:2, dead, 570 days
21.9
DO48681
0 years, male, NA, stage:2, alive, 900 days
21.8
DO45231
0 years, male, NA, stage:2, alive, 930 days
21.2
DO50815
0 years, male, NA, stage:3, alive, 150 days
21.1
DO45239
0 years, male, NA, stage:2, alive, 870 days
20.7
DO45141
0 years, male, NA, stage:2, alive, 1320 days
20.5
DO48743
0 years, female, NA, stage:2, alive, 570 days
20.4
DO45197
0 years, male, NA, stage:2, alive, 1170 days
20.3
DO23530
0 years, male, NA, stage:4, dead, 180 days
20.2
DO23524
0 years, female, NA, stage:2, alive, 1050 days
20.1
DO48730
0 years, female, NA, stage:2, alive, 630 days
20.0
DO48736
0 years, female, NA, stage:1, alive, 600 days
19.6
DO23521
0 years, male, NA, stage:3, alive, 1110 days
19.3
DO50855
0 years, male, NA, stage:2, alive, 570 days
18.5
DO23515
0 years, male, NA, stage:2, alive, 1230 days
18.4
DO23523
0 years, male, NA, stage:3, alive, 1080 days
18.2
DO45249
0 years, male, NA, stage:1, alive, 630 days
18.1
DO45103
0 years, male, NA, stage:3, alive, 450 days
18.1
DO45092
0 years, male, NA, stage:4, dead, 1200 days
18.0
DO45235
0 years, female, NA, stage:1, alive, 900 days
17.7
DO23535
0 years, male, NA, stage:1, alive, 960 days
17.7
DO45267
0 years, male, NA, stage:3, dead, 570 days
17.7
DO45135
0 years, male, NA, stage:1, alive, 1410 days
17.6
DO45157
0 years, male, NA, stage:2, alive, 1980 days
17.5
DO50844
0 years, male, NA, stage:4, alive, 300 days
17.5
DO50825
0 years, male, NA, stage:2, alive, 390 days
17.5
DO45275
0 years, male, NA, stage:3, dead, 10 days
17.4
DO50829
0 years, male, NA, stage:3, alive, 570 days
17.3
DO45097
0 years, male, NA, stage:3, alive, 1620 days
16.9
DO45161
0 years, male, NA, stage:2, dead, 540 days
16.8
DO45181
0 years, female, NA, stage:2, alive, 1200 days
16.8
DO45211
0 years, male, NA, stage:3, alive, 240 days
16.8
DO45233
0 years, male, NA, stage:3, alive, 900 days
16.7
DO45277
0 years, male, NA, stage:3, alive, 600 days
16.6
DO45121
0 years, male, NA, stage:3, alive, 1530 days
16.1
DO45173
0 years, male, NA, stage:3, alive, 1170 days
15.9
DO45217
0 years, female, NA, stage:3, dead, 270 days
15.8
DO45243
0 years, female, NA, stage:3, alive, 930 days
15.7
DO48717
0 years, male, NA, stage:4, dead, 180 days
15.6
DO45223
0 years, male, NA, stage:4, alive, 1020 days
15.2
DO50800
0 years, male, NA, stage:2, alive, 510 days
15.1
DO45205
0 years, female, NA, stage:2, dead, 90 days
15.0
DO48697
0 years, female, NA, stage:2, dead, 810 days
14.9
DO45307
0 years, female, NA, stage:4, dead, 240 days
14.9
DO23536
0 years, male, NA, stage:2, alive, 930 days
14.9
DO48706
0 years, male, NA, stage:2, alive, 870 days
14.7
DO23531
0 years, female, NA, stage:3, alive, 900 days
14.5
DO45155
0 years, male, NA, stage:2, alive, 2160 days
14.5
DO23527
0 years, male, NA, stage:1, alive, 1050 days
14.4
DO23547
0 years, male, NA, stage:1, alive, 1020 days
14.4
DO48715
0 years, female, NA, stage:2, dead, 690 days
14.2
DO50822
0 years, male, NA, stage:2, alive, 510 days
14.0
DO45281
0 years, male, NA, stage:4, alive, 750 days
13.9
DO23514
0 years, male, NA, stage:2, alive, 1290 days
13.9
DO23526
0 years, male, NA, stage:3, alive, 1050 days
13.8
DO45273
0 years, male, NA, stage:2, alive, 480 days
13.7
DO23509
0 years, male, NA, stage:3, dead, 780 days
13.6
DO45165
0 years, male, NA, stage:2, alive, 690 days
13.4
DO45203
0 years, female, NA, stage:2, alive, 1170 days
13.4
DO23529
0 years, male, NA, stage:4, alive, 930 days
13.3
DO23541
0 years, male, NA, stage:2, alive, 930 days
13.1
DO45263
0 years, male, NA, stage:3, dead, 270 days
12.9
DO50787
0 years, male, NA, stage:3, alive, 480 days
12.8
DO45113
0 years, male, NA, stage:3, alive, 1560 days
12.5
DO50774
0 years, female, NA, stage:2, alive, 720 days
12.5
DO45191
0 years, female, NA, stage:2, alive, 1200 days
12.4
DO45209
0 years, male, NA, stage:4, alive, 1350 days
12.4
DO23546
0 years, male, NA, stage:2, alive, 1050 days
12.3
DO45115
0 years, male, NA, stage:2, alive, 840 days
11.8
DO45177
0 years, female, NA, stage:3, alive, 1260 days
11.7
DO45091
0 years, male, NA, stage:2, dead, 1320 days
11.7
DO48761
0 years, male, NA, stage:2, alive, 870 days
11.6
DO50803
0 years, female, NA, stage:1, alive, 540 days
11.5
DO23508
0 years, female, NA, stage:2, alive, 390 days
11.4
DO45303
0 years, female, NA, stage:3, alive, 990 days
11.2
DO45096
0 years, male, NA, stage:2, dead, 1290 days
11.1
DO45225
0 years, male, NA, stage:1, alive, 1050 days
11.0
DO48733
0 years, male, NA, stage:2, alive, 600 days
10.9
DO45201
0 years, male, NA, stage:1, alive, 900 days
10.8
DO23551
0 years, male, NA, stage:3, dead, 150 days
10.5
DO23549
0 years, male, NA, stage:3, alive, 990 days
10.3
DO45285
0 years, male, NA, stage:3, alive, 480 days
10.1
DO45131
0 years, male, NA, stage:4, dead, 360 days
10.1
DO48737
0 years, male, NA, stage:1, alive, 720 days
9.9
DO48725
0 years, male, NA, stage:1, alive, 780 days
9.8
DO23519
0 years, male, NA, stage:3, alive, 630 days
9.7
DO50785
0 years, male, NA, stage:4, dead, 90 days
9.6
DO50789
0 years, female, NA, stage:2, alive, 570 days
9.5
DO45229
0 years, male, NA, stage:1, alive, 990 days
9.4
DO45145
0 years, male, NA, stage:3, dead, 60 days
9.3
DO23542
0 years, male, NA, stage:3, alive, 960 days
9.1
DO45221
0 years, female, NA, stage:4, dead, 390 days
8.9
DO45153
0 years, female, NA, stage:2, alive, 1380 days
8.8
DO48716
0 years, male, NA, stage:2, alive, 720 days
8.8
DO48721
0 years, female, NA, stage:1, alive, 900 days
8.6
DO50802
0 years, male, NA, stage:2, alive, 930 days
8.6
DO45117
0 years, female, NA, stage:2, dead, 1110 days
8.3
DO50845
0 years, male, NA, stage:3, alive, 210 days
8.3
DO50819
0 years, female, NA, stage:2, alive, 510 days
8.3
DO45207
0 years, male, NA, stage:1, alive, 1050 days
8.2
DO45119
0 years, male, NA, stage:3, dead, 510 days
8.2
DO45111
0 years, male, NA, stage:2, alive, 1590 days
8.2
DO50806
0 years, male, NA, stage:4, alive, 540 days
8.1
DO48700
0 years, female, NA, stage:2, alive, 810 days
8.0
DO45095
0 years, male, NA, stage:2, alive, 1620 days
8.0
DO50798
0 years, male, NA, stage:3, dead, 30 days
8.0
DO45269
0 years, male, NA, stage:3, alive, 750 days
7.9
DO45215
0 years, male, NA, stage:2, alive, 1170 days
7.6
DO48742
0 years, male, NA, stage:2, alive, 600 days
7.6
DO45109
0 years, male, NA, stage:2, alive, 1590 days
7.3
DO45257
0 years, male, NA, stage:3, alive, 810 days
7.2
DO23528
0 years, female, NA, stage:2, alive, 1020 days
7.2
DO23510
0 years, female, NA, stage:2, alive, 870 days
7.1
DO45137
0 years, male, NA, stage:1, alive, 1320 days
7.1
DO48760
0 years, female, NA, stage:2, alive, 690 days
7.0
DO23517
0 years, male, NA, stage:2, alive, 1200 days
6.9
DO50857
0 years, male, NA, stage:2, alive, 210 days
6.9
DO45133
0 years, male, NA, stage:3, dead, 660 days
6.9
DO50832
0 years, male, NA, stage:3, alive, 90 days
6.8
DO45259
0 years, male, NA, stage:3, alive, 330 days
6.7
DO48672
0 years, male, NA, stage:2, alive, 450 days
6.7
DO45159
0 years, male, NA, stage:3, alive, 1470 days
6.6
DO23545
0 years, male, NA, stage:2, dead, 570 days
6.6
DO50809
0 years, male, NA, stage:3, dead, 720 days
6.5
DO23534
0 years, male, NA, stage:2, alive, 840 days
6.4
DO48679
0 years, male, NA, stage:2, alive, 1200 days
6.3
DO45099
0 years, male, NA, stage:3, alive, 1590 days
6.3
DO45123
0 years, female, NA, stage:2, dead, 570 days
6.2
DO45175
0 years, male, NA, stage:2, alive, 1140 days
6.2
DO23548
0 years, female, NA, stage:1, alive, 840 days
6.2
DO45237
0 years, male, NA, stage:2, alive, 900 days
6.2
DO48723
0 years, male, NA, stage:1, alive, 600 days
6.2
DO48741
0 years, male, NA, stage:3, alive, 240 days
6.1
DO50817
0 years, male, NA, stage:2, alive, 390 days
6.1
DO45261
0 years, male, NA, stage:3, alive, 990 days
6.0
DO23532
0 years, female, NA, stage:1, alive, 960 days
6.0
DO23538
0 years, male, NA, stage:2, alive, 450 days
5.9
DO45143
0 years, male, NA, stage:3, alive, 1290 days
5.8
DO50859
0 years, male, NA, stage:2, alive, 180 days
5.8
DO50818
0 years, male, NA, stage:2, alive, 510 days
5.6
DO50776
0 years, male, NA, stage:1, alive, 690 days
5.6
DO50808
0 years, male, NA, stage:2, alive, 570 days
5.5
DO48719
0 years, male, NA, stage:2, alive, 690 days
5.4
DO50805
0 years, male, NA, stage:2, alive, 690 days
5.3
DO227801
0 years, female, NA, stage:1, alive, 660 days
5.2
DO48747
0 years, male, NA, stage:3, alive, 540 days
5.1
DO45255
0 years, male, NA, stage:3, alive, 720 days
5.0
DO45199
0 years, female, NA, stage:2, alive, 1350 days
5.0
DO23543
0 years, male, NA, stage:2, alive, 1020 days
5.0
DO48759
0 years, male, NA, stage:3, alive, 720 days
4.9
DO45305
0 years, male, NA, stage:4, alive, 300 days
4.8
DO45253
0 years, male, NA, stage:2, alive, 870 days
4.8
DO48704
0 years, female, NA, stage:3, alive, 750 days
4.8
DO48732
0 years, male, NA, stage:3, alive, 630 days
4.7
DO23539
0 years, male, NA, stage:1, alive, 1110 days
4.7
DO50814
0 years, male, NA, stage:3, alive, 420 days
4.5
DO45101
0 years, male, NA, stage:2, alive, 1680 days
4.4
DO50850
0 years, male, NA, stage:3, alive, 720 days
4.4
DO45193
0 years, female, NA, stage:4, dead, 120 days
4.4
DO48682
0 years, female, NA, stage:3, dead, 120 days
4.4
DO23512
0 years, male, NA, stage:1, alive, 1260 days
4.2
DO45227
0 years, female, NA, stage:2, alive, 1020 days
4.2
DO48674
0 years, male, NA, stage:2, alive, 1260 days
4.1
DO50816
0 years, male, NA, stage:2, alive, 390 days
4.0
DO50813
0 years, male, NA, stage:2, alive, 420 days
4.0
DO45241
0 years, male, NA, stage:1, alive, 1080 days
4.0
DO45093
0 years, male, NA, stage:2, dead, 720 days
4.0
DO23513
0 years, male, NA, stage:3, alive, 1200 days
3.7
DO45125
0 years, male, NA, stage:3, alive, 1680 days
3.7
DO48693
0 years, male, NA, stage:2, alive, 900 days
3.6
DO50811
0 years, male, NA, stage:1, alive, 450 days
3.5
DO227643
0 years, male, NA, stage:2, alive, 1260 days
3.5
DO45163
0 years, male, NA, stage:2, alive, 960 days
3.5
DO23516
0 years, male, NA, stage:3, dead, 20 days
3.5
DO45094
0 years, male, NA, stage:3, alive, 1650 days
3.4
DO50791
0 years, female, NA, stage:1, dead, 480 days
3.4
DO48727
0 years, female, NA, stage:2, dead, 390 days
3.4
DO45179
0 years, female, NA, stage:2, alive, 600 days
3.4
DO23540
0 years, male, NA, stage:1, alive, 750 days
3.3
DO23544
0 years, male, NA, stage:2, alive, 960 days
3.3
DO45129
0 years, male, NA, stage:3, alive, 1470 days
3.3
DO45195
0 years, male, NA, stage:1, alive, 390 days
3.1
DO45107
0 years, female, NA, stage:2, alive, 1710 days
3.0
DO45171
0 years, male, NA, stage:3, alive, 600 days
3.0
DO48701
0 years, male, NA, stage:2, alive, 780 days
2.9
DO50840
0 years, male, NA, stage:2, alive, 330 days
2.9
DO23518
0 years, male, NA, stage:2, alive, 1320 days
2.8
DO50783
0 years, male, NA, stage:3, alive, 480 days
2.7
DO48746
0 years, male, NA, stage:3, alive, 570 days
2.6
DO50793
0 years, male, NA, stage:4, alive, 540 days
2.6
DO45149
0 years, female, NA, stage:2, alive, 1260 days
2.4
DO48677
0 years, male, NA, stage:3, alive, 1140 days
2.3
DO23533
0 years, male, NA, stage:2, alive, 900 days
2.0
DO23525
0 years, male, NA, stage:4, alive, 1050 days
2.0
DO23511
0 years, female, NA, stage:3, dead, 180 days
1.8
DO48695
0 years, male, NA, stage:2, alive, 720 days
1.8
DO50839
0 years, female, NA, stage:3, alive, 330 days
1.7
DO45167
0 years, male, NA, stage:2, dead, 1440 days
1.6
DO50807
0 years, male, NA, stage:1, alive, 540 days
1.4
DO50804
0 years, male, NA, stage:2, alive, 720 days
1.3
DO45169
0 years, male, NA, stage:3, alive, 1350 days
0.8
DO48751
0 years, male, NA, stage:2, dead, 480 days
0.3
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
815
Tumor
1.0
363
Tumor
1.0
1025
Tumor
0.8
192
Normal
0.8
745
Tumor
0.8
413
Tumor
0.8
384
Normal
0.7
967
Tumor
0.6
921
Tumor
0.6
478
Normal
0.6
331
Tumor
0.6
463
Tumor
0.6
916
Normal
0.6
444
Normal
0.6
737
Tumor
0.6
917
Tumor
0.6
171
Tumor
0.6
817
Tumor
0.6
743
Tumor
0.5
311
Tumor
0.5
727
Tumor
0.5
695
Tumor
0.5
517
Tumor
0.5
877
Tumor
0.5
516
Normal
0.4
227
Tumor
0.4
958
Normal
0.4
351
Tumor
0.4
131
Tumor
0.4
814
Normal
0.4
744
Normal
0.4
938
Normal
0.4
965
Tumor
0.4
536
Normal
0.4
975
Tumor
0.4
385
Tumor
0.4
874
Normal
0.4
455
Tumor
0.4
1044
Normal
0.4
391
Tumor
0.4
471
Tumor
0.4
421
Tumor
0.3
823
Tumor
0.3
1031
Tumor
0.3
285
Tumor
0.3
924
Normal
0.3
386
Normal
0.3
492
Normal
0.3
524
Normal
0.3
472
Normal
0.3
354
Normal
0.3
223
Tumor
0.3
546
Normal
0.3
878
Normal
0.3
261
Tumor
0.3
1032
Normal
0.3
984
Normal
0.3
563
Tumor
0.3
1042
Normal
0.3
221
Tumor
0.3
433
Tumor
0.3
915
Tumor
0.3
742
Normal
0.3
146
Normal
0.3
918
Normal
0.3
881
Tumor
0.3
813
Tumor
0.3
297
Tumor
0.3
537
Tumor
0.3
852
Normal
0.3
617
Tumor
0.3
672
Normal
0.3
572
Normal
0.2
498
Normal
0.2
271
Tumor
0.2
983
Tumor
0.2
388
Normal
0.2
553
Tumor
0.2
396
Normal
0.2
716
Normal
0.2
686
Normal
0.2
312
Normal
0.2
362
Normal
0.2
574
Normal
0.2
982
Normal
0.2
1043
Tumor
0.2
966
Normal
0.2
554
Normal
0.2
367
Tumor
0.2
545
Tumor
0.2
416
Normal
0.2
1022
Normal
0.2
968
Normal
0.2
926
Normal
0.2
538
Normal
0.2
482
Normal
0.2
434
Normal
0.2
212
Normal
0.2
862
Normal
0.2
571
Tumor
0.2
352
Normal
0.2
415
Tumor
0.2
474
Normal
0.2
956
Normal
0.2
937
Tumor
0.2
641
Tumor
0.2
283
Tumor
0.2
195
Tumor
0.2
943
Tumor
0.2
284
Normal
0.1
698
Normal
0.1
1014
Normal
0.1
696
Normal
0.1
558
Normal
0.1
963
Tumor
0.1
882
Normal
0.1
364
Normal
0.1
864
Normal
0.1
387
Tumor
0.1
211
Tumor
0.1
148
Normal
0.1
231
Tumor
0.1
126
Normal
0.1
224
Normal
0.1
188
Normal
0.1
468
Normal
0.1
723
Tumor
0.1
358
Normal
0.1
964
Normal
0.1
448
Normal
0.1
816
Normal
0.1
268
Normal
0.1
196
Normal
0.1
412
Normal
0.1
481
Tumor
0.1
514
Normal
0.1
954
Normal
0.1
1046
Normal
0.1
666
Normal
0.1
884
Normal
0.1
341
Tumor
0.1
185
Tumor
0.1
922
Normal
0.1
818
Normal
0.1
671
Tumor
0.1
534
Normal
0.1
214
Normal
0.1
861
Tumor
0.1
746
Normal
0.1
494
Normal
0.1
786
Normal
0.1
738
Normal
0.1
125
Tumor
0.1
1028
Normal
0.1
661
Tumor
0.1
535
Tumor
0.1
923
Tumor
0.1
1026
Normal
0.1
564
Normal
0.1
342
Normal
0.1
272
Normal
0.0
568
Normal
0.0
662
Normal
0.0
456
Normal
0.0
138
Normal
0.0
866
Normal
0.0
366
Normal
0.0
664
Normal
0.0
424
Normal
0.0
778
Normal
0.0
298
Normal
0.0
567
Tumor
0.0
111
Normal
0.0
484
Normal
0.0
978
Normal
0.0
756
Normal
0.0
618
Normal
0.0
395
Tumor
0.0
447
Tumor
0.0
976
Normal
0.0
464
Normal
0.0
228
Normal
0.0
488
Normal
0.0
314
Normal
0.0
636
Normal
0.0
728
Normal
0.0
422
Normal
0.0
232
Normal
0.0
332
Normal
0.0
473
Tumor
0.0
526
Normal
0.0
785
Tumor
0.0
356
Normal
0.0
344
Normal
0.0
1016
Normal
0.0
648
Normal
0.0
858
Normal
0.0
912
Normal
0.0
914
Normal
0.0
824
Normal
0.0
218
Normal
0.0
186
Normal
0.0
528
Normal
0.0
722
Normal
0.0
426
Normal
0.0
376
Normal
-0.1
383
Tumor
-0.1
278
Normal
-0.1
142
Normal
-0.1
467
Tumor
-0.1
187
Tumor
-0.1
883
Tumor
-0.1
628
Normal
-0.1
147
Tumor
-0.1
132
Normal
-0.1
162
Normal
-0.1
222
Normal
-0.1
868
Normal
-0.1
124
Normal
-0.1
452
Normal
-0.1
466
Normal
-0.1
262
Normal
-0.1
127
Tumor
-0.1
435
Tumor
-0.1
952
Normal
-0.1
714
Normal
-0.1
277
Tumor
-0.1
425
Tumor
-0.1
462
Normal
-0.1
257
Tumor
-0.1
428
Normal
-0.1
436
Normal
-0.1
394
Normal
-0.1
112
Tumor
-0.1
944
Normal
-0.1
715
Tumor
-0.1
461
Tumor
-0.1
217
Tumor
-0.1
123
Tumor
-0.1
446
Normal
-0.1
328
Normal
-0.1
368
Normal
-0.1
286
Normal
-0.1
355
Tumor
-0.1
491
Tumor
-0.1
431
Tumor
-0.1
393
Tumor
-0.1
697
Tumor
-0.1
616
Normal
-0.2
615
Tumor
-0.2
343
Tumor
-0.2
114
Normal
-0.2
145
Tumor
-0.2
432
Normal
-0.2
665
Tumor
-0.2
951
Tumor
-0.2
1041
Tumor
-0.2
213
Tumor
-0.2
414
Normal
-0.2
353
Tumor
-0.2
721
Tumor
-0.2
977
Tumor
-0.2
755
Tumor
-0.2
873
Tumor
-0.2
411
Tumor
-0.2
642
Normal
-0.2
136
Normal
-0.2
392
Normal
-0.2
1021
Tumor
-0.2
518
Normal
-0.2
172
Normal
-0.2
128
Normal
-0.2
443
Tumor
-0.2
191
Tumor
-0.3
981
Tumor
-0.3
161
Tumor
-0.3
1045
Tumor
-0.3
365
Tumor
-0.3
141
Tumor
-0.3
375
Tumor
-0.3
851
Tumor
-0.3
258
Normal
-0.3
1027
Tumor
-0.3
857
Tumor
-0.3
957
Tumor
-0.3
863
Tumor
-0.3
361
Tumor
-0.4
113
Tumor
-0.4
647
Tumor
-0.4
465
Tumor
-0.4
911
Tumor
-0.4
573
Tumor
-0.4
267
Tumor
-0.4
1015
Tumor
-0.4
493
Tumor
-0.5
1013
Tumor
-0.5
483
Tumor
-0.5
724
Normal
-0.5
313
Tumor
-0.6
713
Tumor
-0.6
523
Tumor
-0.6
525
Tumor
-0.6
867
Tumor
-0.6
497
Tumor
-0.6
137
Tumor
-0.6
635
Tumor
-0.6
451
Tumor
-0.6
741
Tumor
-0.7
135
Tumor
-0.7
925
Tumor
-0.7
913
Tumor
-0.7
955
Tumor
-0.7
527
Tumor
-0.8
327
Tumor
-0.8
515
Tumor
-0.9
477
Tumor
-0.9
627
Tumor
-0.9
513
Tumor
-1.0
487
Tumor
-1.0
953
Tumor
-1.0
427
Tumor
-1.0
423
Tumor
-1.1
865
Tumor
-1.1
685
Tumor
-1.1
557
Tumor
-1.3
777
Tumor
-1.3
445
Tumor
-1.4
357
Tumor
-1.4
533
Tumor
-1.5
663
Tumor
-1.8
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
