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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
GLUD1 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
161.6
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
1111.9
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
1075.5
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
941.1
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
925.6
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
925.0
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
842.5
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
828.0
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
705.1
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
647.4
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
602.3
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
600.2
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
583.1
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
508.0
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
506.7
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
499.4
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
498.8
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
427.5
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
419.1
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
414.1
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
413.8
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
406.1
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
402.9
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
395.5
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
383.7
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
378.9
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
362.8
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
361.5
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
360.4
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
360.0
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
358.7
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
355.7
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
342.0
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
334.5
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
322.5
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
322.0
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
321.8
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
320.5
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
308.2
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
301.7
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
301.3
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
300.2
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
298.5
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
290.9
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
290.8
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
285.4
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
284.6
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
280.2
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
279.8
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
277.7
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
273.8
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
270.5
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
269.2
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
268.8
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
262.3
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
252.7
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
243.5
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
243.5
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
240.6
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
240.0
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
232.0
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
231.6
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
228.5
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
227.9
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
226.3
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
225.5
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
225.0
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
223.7
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
221.9
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
219.4
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
218.3
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
215.6
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
214.4
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
212.9
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
212.4
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
208.9
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
207.8
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
207.0
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
206.7
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
206.4
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
205.9
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
205.6
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
205.6
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
205.3
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
204.1
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
197.7
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
194.6
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
194.1
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
193.5
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
192.9
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
192.7
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
190.1
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
188.8
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
184.9
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
182.1
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
182.1
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
181.3
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
179.9
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
179.8
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
179.3
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
178.3
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
176.3
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
174.9
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
174.1
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
173.8
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
172.6
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
172.5
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
169.8
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
167.5
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
167.4
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
167.3
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
165.8
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
164.4
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
163.7
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
162.3
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
161.9
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
161.5
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
161.0
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
158.3
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
158.3
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
158.2
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
157.7
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
155.5
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
155.4
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
154.4
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
154.1
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
152.8
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
151.6
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
151.6
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
150.3
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
150.0
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
149.3
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
148.0
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
146.4
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
146.0
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
144.8
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
143.9
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
142.9
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
142.2
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
140.9
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
140.8
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
138.3
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
138.2
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
137.6
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
137.3
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
135.4
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
135.3
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
135.3
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
132.8
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
132.1
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
132.0
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
130.6
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
130.4
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
130.2
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
128.2
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
126.4
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
126.2
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
125.4
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
123.7
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
123.7
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
123.3
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
122.1
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
121.0
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
120.1
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
119.8
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
119.5
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
118.9
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
118.8
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
118.5
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
117.8
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
117.1
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
116.6
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
116.5
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
116.3
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
115.5
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
115.4
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
115.1
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
114.1
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
113.7
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
113.4
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
112.8
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
112.3
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
111.2
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
109.5
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
109.4
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
108.3
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
108.2
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
107.7
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
106.8
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
106.7
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
106.3
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
106.3
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
105.8
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
105.5
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
105.1
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
104.6
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
104.1
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
103.9
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
103.7
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
103.0
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
102.3
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
102.0
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
101.9
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
101.4
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
100.5
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
99.8
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
99.8
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
99.4
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
98.9
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
98.2
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
98.1
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
97.9
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
97.7
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
97.5
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
97.4
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
97.4
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
97.2
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
96.7
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
96.6
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
94.9
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
94.3
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
94.1
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
93.2
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
93.1
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
93.1
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
92.4
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
91.7
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
91.0
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
90.6
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
90.6
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
89.9
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
87.9
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
87.8
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
87.6
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
87.6
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
87.5
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
87.5
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
87.2
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
86.0
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
85.6
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
85.0
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
84.4
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
83.6
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
83.4
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
83.0
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
83.0
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
82.8
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
82.6
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
82.4
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
82.1
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
81.9
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
81.6
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
81.6
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
81.3
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
81.2
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
81.2
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
81.1
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
80.5
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
80.2
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
79.7
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
79.5
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
79.4
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
79.1
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
79.0
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
76.6
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
76.5
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
75.6
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
75.5
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
75.2
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
75.2
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
74.2
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
74.0
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
74.0
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
73.8
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
73.3
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
72.7
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
72.5
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
72.2
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
71.7
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
71.7
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
71.3
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
71.3
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
70.8
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
70.7
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
70.0
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
69.9
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
69.2
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
69.0
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
68.6
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
67.8
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
67.7
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
67.7
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
67.6
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
67.5
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
67.2
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
66.5
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
66.4
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
66.2
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
65.8
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
65.5
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
64.1
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
63.9
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
63.6
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
62.6
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
60.4
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
60.1
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
60.0
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
59.2
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
59.2
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
59.0
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
58.9
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
58.8
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
58.5
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
58.4
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
58.1
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
58.0
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
56.6
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
56.3
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
56.1
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
54.3
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
54.0
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
54.0
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
53.4
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
52.4
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
50.7
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
50.3
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
49.2
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
49.2
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
48.7
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
47.7
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
46.7
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
46.5
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
46.1
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
45.5
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
44.7
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
44.5
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
44.4
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
43.5
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
43.3
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
43.1
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
42.3
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
41.9
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
40.3
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
39.4
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
38.7
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
38.6
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
37.7
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
37.5
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
37.0
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
36.3
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
36.0
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
35.0
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
33.9
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
33.2
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
33.1
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
31.2
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
30.0
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
27.8
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
27.4
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
25.9
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
23.4
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
23.2
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
GLUD1 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
144.5
Number of samples
231
Samples
Sample
Description
TPM
DO23529
0 years, male, NA, stage:4, alive, 930 days
771.8
DO45259
0 years, male, NA, stage:3, alive, 330 days
750.8
DO48757
0 years, female, NA, stage:3, alive, 480 days
723.4
DO50820
0 years, female, NA, stage:3, alive, 510 days
682.5
DO45179
0 years, female, NA, stage:2, alive, 600 days
643.6
DO45219
0 years, male, NA, stage:2, alive, 1080 days
611.7
DO48719
0 years, male, NA, stage:2, alive, 690 days
459.7
DO45217
0 years, female, NA, stage:3, dead, 270 days
443.8
DO45193
0 years, female, NA, stage:4, dead, 120 days
437.5
DO45187
0 years, female, NA, stage:1, alive, 1260 days
425.1
DO45247
0 years, female, NA, stage:2, alive, 210 days
405.0
DO48681
0 years, male, NA, stage:2, alive, 900 days
386.1
DO48751
0 years, male, NA, stage:2, dead, 480 days
343.3
DO23514
0 years, male, NA, stage:2, alive, 1290 days
332.6
DO45105
0 years, male, NA, stage:1, alive, 1680 days
320.5
DO45161
0 years, male, NA, stage:2, dead, 540 days
306.6
DO50859
0 years, male, NA, stage:2, alive, 180 days
305.7
DO45131
0 years, male, NA, stage:4, dead, 360 days
304.4
DO48715
0 years, female, NA, stage:2, dead, 690 days
301.0
DO48737
0 years, male, NA, stage:1, alive, 720 days
298.8
DO45121
0 years, male, NA, stage:3, alive, 1530 days
294.8
DO45115
0 years, male, NA, stage:2, alive, 840 days
286.8
DO50802
0 years, male, NA, stage:2, alive, 930 days
283.0
DO45183
0 years, female, NA, stage:2, dead, 570 days
278.6
DO50825
0 years, male, NA, stage:2, alive, 390 days
277.3
DO50799
0 years, female, NA, stage:2, alive, 540 days
260.3
DO45227
0 years, female, NA, stage:2, alive, 1020 days
257.5
DO48736
0 years, female, NA, stage:1, alive, 600 days
257.1
DO45215
0 years, male, NA, stage:2, alive, 1170 days
253.3
DO23508
0 years, female, NA, stage:2, alive, 390 days
252.0
DO45281
0 years, male, NA, stage:4, alive, 750 days
249.8
DO45177
0 years, female, NA, stage:3, alive, 1260 days
248.7
DO45173
0 years, male, NA, stage:3, alive, 1170 days
239.1
DO50844
0 years, male, NA, stage:4, alive, 300 days
232.7
DO45127
0 years, male, NA, stage:3, dead, 420 days
232.6
DO45197
0 years, male, NA, stage:2, alive, 1170 days
231.6
DO45239
0 years, male, NA, stage:2, alive, 870 days
227.7
DO48677
0 years, male, NA, stage:3, alive, 1140 days
227.2
DO48706
0 years, male, NA, stage:2, alive, 870 days
223.9
DO48712
0 years, male, NA, stage:2, alive, 810 days
213.4
DO45265
0 years, male, NA, stage:3, alive, 1020 days
211.4
DO50822
0 years, male, NA, stage:2, alive, 510 days
211.2
DO45099
0 years, male, NA, stage:3, alive, 1590 days
208.1
DO48672
0 years, male, NA, stage:2, alive, 450 days
206.5
DO45129
0 years, male, NA, stage:3, alive, 1470 days
205.8
DO50815
0 years, male, NA, stage:3, alive, 150 days
190.5
DO50793
0 years, male, NA, stage:4, alive, 540 days
188.6
DO45093
0 years, male, NA, stage:2, dead, 720 days
186.7
DO45255
0 years, male, NA, stage:3, alive, 720 days
186.6
DO23549
0 years, male, NA, stage:3, alive, 990 days
186.4
DO45195
0 years, male, NA, stage:1, alive, 390 days
183.7
DO50806
0 years, male, NA, stage:4, alive, 540 days
181.3
DO48697
0 years, female, NA, stage:2, dead, 810 days
181.0
DO45203
0 years, female, NA, stage:2, alive, 1170 days
170.1
DO48730
0 years, female, NA, stage:2, alive, 630 days
167.6
DO23527
0 years, male, NA, stage:1, alive, 1050 days
166.9
DO45267
0 years, male, NA, stage:3, dead, 570 days
164.8
DO45097
0 years, male, NA, stage:3, alive, 1620 days
164.7
DO23528
0 years, female, NA, stage:2, alive, 1020 days
164.0
DO23516
0 years, male, NA, stage:3, dead, 20 days
162.7
DO50818
0 years, male, NA, stage:2, alive, 510 days
162.4
DO23531
0 years, female, NA, stage:3, alive, 900 days
161.8
DO45221
0 years, female, NA, stage:4, dead, 390 days
159.4
DO45096
0 years, male, NA, stage:2, dead, 1290 days
158.4
DO23511
0 years, female, NA, stage:3, dead, 180 days
155.1
DO45101
0 years, male, NA, stage:2, alive, 1680 days
154.2
DO48674
0 years, male, NA, stage:2, alive, 1260 days
153.2
DO50787
0 years, male, NA, stage:3, alive, 480 days
153.0
DO45107
0 years, female, NA, stage:2, alive, 1710 days
153.0
DO23542
0 years, male, NA, stage:3, alive, 960 days
152.0
DO50857
0 years, male, NA, stage:2, alive, 210 days
151.2
DO48720
0 years, female, NA, stage:2, alive, 570 days
150.9
DO23544
0 years, male, NA, stage:2, alive, 960 days
150.0
DO23535
0 years, male, NA, stage:1, alive, 960 days
149.0
DO48725
0 years, male, NA, stage:1, alive, 780 days
147.9
DO50855
0 years, male, NA, stage:2, alive, 570 days
147.5
DO50804
0 years, male, NA, stage:2, alive, 720 days
147.3
DO23517
0 years, male, NA, stage:2, alive, 1200 days
146.1
DO50785
0 years, male, NA, stage:4, dead, 90 days
144.7
DO227643
0 years, male, NA, stage:2, alive, 1260 days
144.1
DO45213
0 years, male, NA, stage:1, alive, 1200 days
143.7
DO50817
0 years, male, NA, stage:2, alive, 390 days
142.8
DO48695
0 years, male, NA, stage:2, alive, 720 days
141.8
DO45175
0 years, male, NA, stage:2, alive, 1140 days
140.0
DO48716
0 years, male, NA, stage:2, alive, 720 days
135.3
DO45135
0 years, male, NA, stage:1, alive, 1410 days
132.8
DO45153
0 years, female, NA, stage:2, alive, 1380 days
132.7
DO45181
0 years, female, NA, stage:2, alive, 1200 days
132.2
DO50789
0 years, female, NA, stage:2, alive, 570 days
131.4
DO48742
0 years, male, NA, stage:2, alive, 600 days
129.3
DO50803
0 years, female, NA, stage:1, alive, 540 days
128.8
DO45103
0 years, male, NA, stage:3, alive, 450 days
128.4
DO45191
0 years, female, NA, stage:2, alive, 1200 days
126.4
DO48727
0 years, female, NA, stage:2, dead, 390 days
126.0
DO45299
0 years, female, NA, stage:1, alive, 1440 days
126.0
DO23526
0 years, male, NA, stage:3, alive, 1050 days
124.9
DO45171
0 years, male, NA, stage:3, alive, 600 days
124.2
DO45243
0 years, female, NA, stage:3, alive, 930 days
124.2
DO23545
0 years, male, NA, stage:2, dead, 570 days
121.1
DO23536
0 years, male, NA, stage:2, alive, 930 days
121.0
DO45167
0 years, male, NA, stage:2, dead, 1440 days
120.9
DO45091
0 years, male, NA, stage:2, dead, 1320 days
120.9
DO45223
0 years, male, NA, stage:4, alive, 1020 days
120.5
DO48760
0 years, female, NA, stage:2, alive, 690 days
120.2
DO23548
0 years, female, NA, stage:1, alive, 840 days
119.4
DO45165
0 years, male, NA, stage:2, alive, 690 days
119.4
DO45189
0 years, female, NA, stage:2, alive, 1200 days
118.9
DO48723
0 years, male, NA, stage:1, alive, 600 days
118.6
DO45261
0 years, male, NA, stage:3, alive, 990 days
117.9
DO50776
0 years, male, NA, stage:1, alive, 690 days
117.7
DO45119
0 years, male, NA, stage:3, dead, 510 days
116.7
DO50783
0 years, male, NA, stage:3, alive, 480 days
115.8
DO23551
0 years, male, NA, stage:3, dead, 150 days
115.6
DO45133
0 years, male, NA, stage:3, dead, 660 days
115.3
DO45094
0 years, male, NA, stage:3, alive, 1650 days
114.7
DO45117
0 years, female, NA, stage:2, dead, 1110 days
113.6
DO50811
0 years, male, NA, stage:1, alive, 450 days
112.9
DO45143
0 years, male, NA, stage:3, alive, 1290 days
112.3
DO23512
0 years, male, NA, stage:1, alive, 1260 days
110.7
DO45235
0 years, female, NA, stage:1, alive, 900 days
110.3
DO48700
0 years, female, NA, stage:2, alive, 810 days
109.8
DO45199
0 years, female, NA, stage:2, alive, 1350 days
109.1
DO23534
0 years, male, NA, stage:2, alive, 840 days
105.6
DO45163
0 years, male, NA, stage:2, alive, 960 days
105.3
DO45092
0 years, male, NA, stage:4, dead, 1200 days
104.8
DO48704
0 years, female, NA, stage:3, alive, 750 days
104.2
DO48741
0 years, male, NA, stage:3, alive, 240 days
103.8
DO45231
0 years, male, NA, stage:2, alive, 930 days
103.7
DO48721
0 years, female, NA, stage:1, alive, 900 days
103.5
DO45229
0 years, male, NA, stage:1, alive, 990 days
102.2
DO23539
0 years, male, NA, stage:1, alive, 1110 days
100.9
DO48679
0 years, male, NA, stage:2, alive, 1200 days
100.3
DO23524
0 years, female, NA, stage:2, alive, 1050 days
100.2
DO227801
0 years, female, NA, stage:1, alive, 660 days
97.4
DO50774
0 years, female, NA, stage:2, alive, 720 days
97.4
DO23518
0 years, male, NA, stage:2, alive, 1320 days
95.7
DO45185
0 years, male, NA, stage:2, alive, 600 days
94.3
DO23509
0 years, male, NA, stage:3, dead, 780 days
93.9
DO48746
0 years, male, NA, stage:3, alive, 570 days
93.4
DO45159
0 years, male, NA, stage:3, alive, 1470 days
93.4
DO23541
0 years, male, NA, stage:2, alive, 930 days
92.8
DO48728
0 years, female, NA, stage:2, alive, 150 days
91.6
DO45201
0 years, male, NA, stage:1, alive, 900 days
91.0
DO23537
0 years, male, NA, stage:2, dead, 900 days
91.0
DO23525
0 years, male, NA, stage:4, alive, 1050 days
89.7
DO23543
0 years, male, NA, stage:2, alive, 1020 days
89.5
DO45241
0 years, male, NA, stage:1, alive, 1080 days
88.8
DO23533
0 years, male, NA, stage:2, alive, 900 days
88.2
DO23510
0 years, female, NA, stage:2, alive, 870 days
87.6
DO45269
0 years, male, NA, stage:3, alive, 750 days
87.2
DO23538
0 years, male, NA, stage:2, alive, 450 days
87.1
DO48759
0 years, male, NA, stage:3, alive, 720 days
86.3
DO50813
0 years, male, NA, stage:2, alive, 420 days
86.1
DO48733
0 years, male, NA, stage:2, alive, 600 days
84.4
DO23550
0 years, male, NA, stage:1, alive, 990 days
83.7
DO45209
0 years, male, NA, stage:4, alive, 1350 days
82.1
DO45141
0 years, male, NA, stage:2, alive, 1320 days
81.4
DO48717
0 years, male, NA, stage:4, dead, 180 days
80.4
DO48761
0 years, male, NA, stage:2, alive, 870 days
80.3
DO23540
0 years, male, NA, stage:1, alive, 750 days
79.3
DO45157
0 years, male, NA, stage:2, alive, 1980 days
79.2
DO23515
0 years, male, NA, stage:2, alive, 1230 days
78.3
DO45233
0 years, male, NA, stage:3, alive, 900 days
78.2
DO50778
0 years, male, NA, stage:4, alive, 630 days
76.7
DO50839
0 years, female, NA, stage:3, alive, 330 days
76.5
DO50800
0 years, male, NA, stage:2, alive, 510 days
75.7
DO50816
0 years, male, NA, stage:2, alive, 390 days
75.5
DO48743
0 years, female, NA, stage:2, alive, 570 days
74.5
DO50809
0 years, male, NA, stage:3, dead, 720 days
73.4
DO45109
0 years, male, NA, stage:2, alive, 1590 days
73.4
DO23532
0 years, female, NA, stage:1, alive, 960 days
72.8
DO45113
0 years, male, NA, stage:3, alive, 1560 days
71.0
DO50798
0 years, male, NA, stage:3, dead, 30 days
69.5
DO45253
0 years, male, NA, stage:2, alive, 870 days
69.4
DO45169
0 years, male, NA, stage:3, alive, 1350 days
69.0
DO45307
0 years, female, NA, stage:4, dead, 240 days
68.0
DO45139
0 years, male, NA, stage:3, alive, 1320 days
66.4
DO23546
0 years, male, NA, stage:2, alive, 1050 days
66.1
DO48693
0 years, male, NA, stage:2, alive, 900 days
65.9
DO45145
0 years, male, NA, stage:3, dead, 60 days
65.8
DO45123
0 years, female, NA, stage:2, dead, 570 days
65.0
DO23547
0 years, male, NA, stage:1, alive, 1020 days
64.5
DO50805
0 years, male, NA, stage:2, alive, 690 days
63.4
DO45095
0 years, male, NA, stage:2, alive, 1620 days
63.4
DO50845
0 years, male, NA, stage:3, alive, 210 days
63.4
DO23552
0 years, female, NA, stage:1, alive, 810 days
62.5
DO45273
0 years, male, NA, stage:2, alive, 480 days
60.7
DO23530
0 years, male, NA, stage:4, dead, 180 days
59.8
DO50850
0 years, male, NA, stage:3, alive, 720 days
58.7
DO50829
0 years, male, NA, stage:3, alive, 570 days
58.3
DO50807
0 years, male, NA, stage:1, alive, 540 days
54.8
DO50814
0 years, male, NA, stage:3, alive, 420 days
54.6
DO45303
0 years, female, NA, stage:3, alive, 990 days
52.4
DO45257
0 years, male, NA, stage:3, alive, 810 days
52.4
DO45125
0 years, male, NA, stage:3, alive, 1680 days
50.7
DO45155
0 years, male, NA, stage:2, alive, 2160 days
50.7
DO23513
0 years, male, NA, stage:3, alive, 1200 days
50.6
DO45251
0 years, female, NA, stage:2, alive, 900 days
50.3
DO45279
0 years, male, NA, stage:3, alive, 1290 days
49.4
DO50840
0 years, male, NA, stage:2, alive, 330 days
49.1
DO50808
0 years, male, NA, stage:2, alive, 570 days
47.7
DO45277
0 years, male, NA, stage:3, alive, 600 days
47.3
DO45111
0 years, male, NA, stage:2, alive, 1590 days
47.0
DO45289
0 years, female, NA, stage:3, alive, 360 days
46.7
DO48701
0 years, male, NA, stage:2, alive, 780 days
46.4
DO45249
0 years, male, NA, stage:1, alive, 630 days
44.8
DO50832
0 years, male, NA, stage:3, alive, 90 days
44.5
DO23523
0 years, male, NA, stage:3, alive, 1080 days
42.3
DO45137
0 years, male, NA, stage:1, alive, 1320 days
41.7
DO45287
0 years, male, NA, stage:1, alive, 390 days
41.2
DO50791
0 years, female, NA, stage:1, dead, 480 days
39.8
DO48682
0 years, female, NA, stage:3, dead, 120 days
39.6
DO45283
0 years, male, NA, stage:3, alive, 510 days
39.4
DO45237
0 years, male, NA, stage:2, alive, 900 days
38.4
DO48732
0 years, male, NA, stage:3, alive, 630 days
37.8
DO50819
0 years, female, NA, stage:2, alive, 510 days
34.5
DO45225
0 years, male, NA, stage:1, alive, 1050 days
33.9
DO45275
0 years, male, NA, stage:3, dead, 10 days
33.3
DO45301
0 years, male, NA, stage:2, dead, 1440 days
32.2
DO45263
0 years, male, NA, stage:3, dead, 270 days
32.1
DO45207
0 years, male, NA, stage:1, alive, 1050 days
31.4
DO23521
0 years, male, NA, stage:3, alive, 1110 days
30.4
DO45245
0 years, female, NA, stage:2, dead, 240 days
29.7
DO45285
0 years, male, NA, stage:3, alive, 480 days
29.4
DO45297
0 years, female, NA, stage:4, dead, 1260 days
29.0
DO45205
0 years, female, NA, stage:2, dead, 90 days
29.0
DO45211
0 years, male, NA, stage:3, alive, 240 days
25.9
DO23519
0 years, male, NA, stage:3, alive, 630 days
25.5
DO45149
0 years, female, NA, stage:2, alive, 1260 days
22.2
DO48747
0 years, male, NA, stage:3, alive, 540 days
22.1
DO45305
0 years, male, NA, stage:4, alive, 300 days
19.4
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
186
Normal
1.0
742
Normal
0.9
436
Normal
0.9
534
Normal
0.9
452
Normal
0.9
314
Normal
0.9
196
Normal
0.9
648
Normal
0.9
363
Tumor
0.9
786
Normal
0.8
462
Normal
0.8
162
Normal
0.8
484
Normal
0.8
358
Normal
0.8
1032
Normal
0.8
746
Normal
0.8
618
Normal
0.8
664
Normal
0.8
912
Normal
0.8
356
Normal
0.8
376
Normal
0.8
432
Normal
0.8
222
Normal
0.8
298
Normal
0.8
636
Normal
0.8
424
Normal
0.8
464
Normal
0.8
172
Normal
0.8
428
Normal
0.7
414
Normal
0.7
394
Normal
0.7
824
Normal
0.7
466
Normal
0.7
128
Normal
0.7
354
Normal
0.7
342
Normal
0.7
132
Normal
0.7
568
Normal
0.7
938
Normal
0.7
572
Normal
0.7
698
Normal
0.7
862
Normal
0.7
332
Normal
0.7
1016
Normal
0.7
756
Normal
0.7
422
Normal
0.7
278
Normal
0.7
352
Normal
0.7
546
Normal
0.7
148
Normal
0.7
488
Normal
0.7
818
Normal
0.7
388
Normal
0.7
868
Normal
0.6
564
Normal
0.6
446
Normal
0.6
227
Tumor
0.6
232
Normal
0.6
858
Normal
0.6
136
Normal
0.6
723
Tumor
0.6
864
Normal
0.6
866
Normal
0.6
738
Normal
0.6
426
Normal
0.6
882
Normal
0.6
494
Normal
0.6
878
Normal
0.6
1022
Normal
0.6
744
Normal
0.6
616
Normal
0.6
1026
Normal
0.6
472
Normal
0.6
482
Normal
0.6
111
Normal
0.6
448
Normal
0.6
964
Normal
0.6
528
Normal
0.6
884
Normal
0.5
1043
Tumor
0.5
286
Normal
0.5
944
Normal
0.5
468
Normal
0.5
574
Normal
0.5
328
Normal
0.5
412
Normal
0.5
922
Normal
0.5
114
Normal
0.5
926
Normal
0.5
976
Normal
0.5
396
Normal
0.5
714
Normal
0.5
258
Normal
0.5
968
Normal
0.5
662
Normal
0.5
1046
Normal
0.5
982
Normal
0.5
628
Normal
0.5
696
Normal
0.5
666
Normal
0.5
1031
Tumor
0.5
392
Normal
0.5
514
Normal
0.4
366
Normal
0.4
722
Normal
0.4
138
Normal
0.4
526
Normal
0.4
312
Normal
0.4
142
Normal
0.4
1014
Normal
0.4
978
Normal
0.4
474
Normal
0.4
272
Normal
0.4
262
Normal
0.4
124
Normal
0.4
218
Normal
0.4
228
Normal
0.4
214
Normal
0.4
715
Tumor
0.4
914
Normal
0.4
918
Normal
0.4
716
Normal
0.4
368
Normal
0.4
924
Normal
0.4
362
Normal
0.4
686
Normal
0.4
456
Normal
0.4
558
Normal
0.3
728
Normal
0.3
518
Normal
0.3
146
Normal
0.3
642
Normal
0.3
958
Normal
0.3
364
Normal
0.3
672
Normal
0.3
554
Normal
0.3
984
Normal
0.3
778
Normal
0.3
435
Tumor
0.3
284
Normal
0.3
816
Normal
0.3
344
Normal
0.2
874
Normal
0.2
391
Tumor
0.2
171
Tumor
0.2
126
Normal
0.2
212
Normal
0.2
952
Normal
0.2
416
Normal
0.2
881
Tumor
0.2
1042
Normal
0.2
127
Tumor
0.2
877
Tumor
0.2
1044
Normal
0.2
966
Normal
0.2
384
Normal
0.1
131
Tumor
0.1
516
Normal
0.1
852
Normal
0.1
916
Normal
0.1
271
Tumor
0.1
1028
Normal
0.1
341
Tumor
0.1
386
Normal
0.1
517
Tumor
0.1
465
Tumor
0.1
553
Tumor
0.1
478
Normal
0.1
954
Normal
0.0
188
Normal
0.0
524
Normal
0.0
217
Tumor
0.0
956
Normal
0.0
434
Normal
0.0
112
Tumor
0.0
224
Normal
0.0
353
Tumor
0.0
911
Tumor
-0.1
641
Tumor
-0.1
851
Tumor
-0.1
444
Normal
-0.1
915
Tumor
-0.1
147
Tumor
-0.1
473
Tumor
-0.1
955
Tumor
-0.1
421
Tumor
-0.1
123
Tumor
-0.1
221
Tumor
-0.1
1025
Tumor
-0.1
415
Tumor
-0.1
451
Tumor
-0.1
145
Tumor
-0.1
925
Tumor
-0.1
563
Tumor
-0.1
268
Normal
-0.1
1041
Tumor
-0.1
567
Tumor
-0.1
192
Normal
-0.1
727
Tumor
-0.1
571
Tumor
-0.1
741
Tumor
-0.1
492
Normal
-0.2
461
Tumor
-0.2
755
Tumor
-0.2
921
Tumor
-0.2
538
Normal
-0.2
231
Tumor
-0.2
498
Normal
-0.2
883
Tumor
-0.2
113
Tumor
-0.2
867
Tumor
-0.2
713
Tumor
-0.3
261
Tumor
-0.3
963
Tumor
-0.3
951
Tumor
-0.3
981
Tumor
-0.3
873
Tumor
-0.4
285
Tumor
-0.4
627
Tumor
-0.4
191
Tumor
-0.4
815
Tumor
-0.4
481
Tumor
-0.4
721
Tumor
-0.4
617
Tumor
-0.4
536
Normal
-0.4
857
Tumor
-0.4
975
Tumor
-0.4
477
Tumor
-0.4
185
Tumor
-0.4
743
Tumor
-0.4
671
Tumor
-0.4
665
Tumor
-0.5
695
Tumor
-0.5
1027
Tumor
-0.5
443
Tumor
-0.5
331
Tumor
-0.5
965
Tumor
-0.5
431
Tumor
-0.5
387
Tumor
-0.6
724
Normal
-0.6
823
Tumor
-0.6
967
Tumor
-0.6
483
Tumor
-0.6
861
Tumor
-0.6
817
Tumor
-0.6
413
Tumor
-0.6
977
Tumor
-0.6
557
Tumor
-0.6
615
Tumor
-0.7
685
Tumor
-0.7
327
Tumor
-0.7
937
Tumor
-0.7
515
Tumor
-0.7
1045
Tumor
-0.7
423
Tumor
-0.7
863
Tumor
-0.7
361
Tumor
-0.7
187
Tumor
-0.7
297
Tumor
-0.7
537
Tumor
-0.7
433
Tumor
-0.7
745
Tumor
-0.7
141
Tumor
-0.7
447
Tumor
-0.8
195
Tumor
-0.8
1021
Tumor
-0.8
267
Tumor
-0.8
135
Tumor
-0.8
425
Tumor
-0.9
1015
Tumor
-0.9
785
Tumor
-0.9
351
Tumor
-0.9
471
Tumor
-0.9
161
Tumor
-1.0
943
Tumor
-1.0
814
Normal
-1.0
137
Tumor
-1.0
463
Tumor
-1.0
257
Tumor
-1.0
223
Tumor
-1.0
277
Tumor
-1.0
125
Tumor
-1.1
865
Tumor
-1.1
917
Tumor
-1.1
487
Tumor
-1.1
513
Tumor
-1.1
213
Tumor
-1.1
383
Tumor
-1.1
411
Tumor
-1.1
663
Tumor
-1.2
923
Tumor
-1.2
661
Tumor
-1.2
533
Tumor
-1.2
355
Tumor
-1.2
491
Tumor
-1.2
393
Tumor
-1.2
455
Tumor
-1.2
467
Tumor
-1.2
525
Tumor
-1.3
357
Tumor
-1.3
367
Tumor
-1.3
635
Tumor
-1.3
365
Tumor
-1.3
647
Tumor
-1.3
737
Tumor
-1.3
983
Tumor
-1.3
523
Tumor
-1.3
777
Tumor
-1.3
493
Tumor
-1.4
445
Tumor
-1.4
427
Tumor
-1.4
953
Tumor
-1.4
313
Tumor
-1.4
395
Tumor
-1.4
813
Tumor
-1.4
311
Tumor
-1.4
535
Tumor
-1.5
913
Tumor
-1.5
497
Tumor
-1.5
343
Tumor
-1.5
957
Tumor
-1.6
573
Tumor
-1.6
545
Tumor
-1.6
1013
Tumor
-1.7
283
Tumor
-1.7
697
Tumor
-1.7
385
Tumor
-1.8
375
Tumor
-1.8
527
Tumor
-1.8
211
Tumor
-1.9
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.