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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
FAM171A1 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
11.1
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
129.9
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
127.1
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
118.3
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
111.7
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
108.9
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
80.5
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
79.4
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
74.9
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
69.3
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
64.0
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
52.3
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
50.1
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
47.1
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
43.3
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
42.6
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
40.3
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
39.9
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
39.7
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
37.4
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
36.7
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
35.3
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
34.2
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
34.1
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
31.8
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
30.4
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
30.3
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
30.0
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
29.2
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
29.2
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
28.7
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
28.2
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
27.4
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
27.1
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
26.7
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
26.3
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
24.5
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
24.3
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
24.1
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
24.1
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
24.1
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
23.7
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
23.1
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
22.9
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
21.1
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
21.0
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
20.9
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
20.7
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
20.6
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
20.6
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
20.2
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
19.6
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
18.3
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
18.2
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
18.1
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
17.8
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
17.7
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
17.6
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
17.5
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
17.5
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
17.3
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
16.9
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
16.8
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
16.6
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
16.4
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
16.0
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
15.8
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
15.8
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
15.7
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
15.6
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
15.4
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
15.4
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
15.2
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
15.2
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
15.0
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
14.8
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
14.8
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
14.8
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
14.6
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
14.4
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
14.4
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
13.9
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
13.9
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
13.6
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
13.6
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
13.5
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
13.5
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
13.3
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
13.2
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
13.2
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
13.2
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
13.2
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
13.1
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
13.1
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
13.0
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
12.7
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
12.7
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
12.6
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
12.6
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
12.4
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
12.4
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
12.1
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
11.8
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
11.8
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
11.8
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
11.7
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
11.6
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
11.6
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
11.6
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
11.6
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
11.6
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
11.3
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
11.3
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
10.9
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
10.8
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
10.8
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
10.8
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
10.8
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
10.6
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
10.6
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
10.5
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
10.4
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
10.2
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
10.1
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
9.8
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
9.8
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
9.6
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
9.4
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
9.3
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
9.3
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
9.2
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
9.2
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
9.1
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
9.1
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
9.0
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
8.9
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
8.8
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
8.8
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
8.7
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
8.6
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
8.6
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
8.6
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
8.6
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
8.5
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
8.5
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
8.4
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
8.3
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
8.2
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
8.2
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
8.1
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
8.1
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
8.0
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
8.0
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
7.8
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
7.8
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
7.7
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
7.6
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
7.5
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
7.4
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
7.3
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
7.2
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
7.1
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
7.1
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
7.0
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
7.0
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
6.9
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
6.9
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
6.9
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
6.9
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
6.8
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
6.7
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
6.7
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
6.5
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
6.5
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
6.5
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
6.3
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
6.3
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
6.2
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
6.2
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
6.2
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
6.2
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
6.1
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
6.0
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
6.0
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
5.9
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
5.8
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
5.7
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
5.7
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
5.7
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
5.6
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
5.5
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
5.5
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
5.4
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
5.4
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
5.4
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
5.4
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
5.3
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
5.3
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
5.3
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
5.1
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
5.0
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
5.0
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
4.8
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
4.8
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
4.8
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
4.7
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
4.7
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
4.6
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
4.6
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
4.4
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
4.4
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
4.4
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
4.3
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
4.3
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
4.3
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
4.2
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
4.2
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
4.2
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
4.2
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
4.1
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
4.1
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
3.9
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
3.9
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
3.9
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
3.9
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
3.9
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
3.8
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
3.8
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
3.7
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
3.6
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
3.6
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
3.6
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
3.5
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
3.4
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
3.4
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
3.3
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
3.3
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
3.2
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
3.2
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
3.2
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
3.2
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
3.2
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
3.1
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
3.1
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
3.1
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
3.0
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
3.0
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
3.0
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
2.8
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
2.8
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
2.7
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
2.7
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
2.7
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
2.6
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
2.6
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
2.6
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
2.6
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
2.6
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
2.6
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
2.5
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
2.4
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
2.4
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
2.4
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
2.1
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
2.1
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
2.1
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
1.9
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
1.9
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
1.9
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
1.8
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
1.8
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
1.8
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
1.7
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
1.7
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
1.6
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
1.6
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
1.6
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
1.6
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
1.6
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
1.3
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
1.2
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
1.2
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
1.2
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
1.1
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
1.1
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
1.1
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
1.1
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
1.1
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
1.1
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
1.1
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
1.0
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
1.0
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
0.9
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
0.9
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
0.9
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
0.9
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
0.9
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
0.9
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
0.9
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
0.8
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
0.8
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
0.7
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
0.7
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
0.7
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
0.7
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
0.6
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
0.6
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
0.6
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
0.6
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
0.6
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
0.6
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
0.6
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
0.5
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
0.5
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
0.5
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
0.4
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
0.4
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
0.4
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
0.4
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
0.4
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
0.4
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
0.4
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
0.4
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
0.4
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
0.3
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
0.3
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
0.3
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
0.3
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
0.3
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
0.3
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
0.3
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
0.3
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
0.3
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
0.3
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
0.3
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
0.3
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
0.3
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
0.3
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
0.3
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
0.3
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
0.3
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
0.3
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
0.3
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
0.2
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
0.2
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
0.2
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
0.2
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
0.2
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
0.2
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
0.2
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
0.2
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
0.2
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
0.2
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
0.2
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
0.1
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
0.1
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
0.1
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
0.1
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
0.1
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
0.1
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
0.1
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
0.1
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
FAM171A1 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
7.7
Number of samples
231
Samples
Sample
Description
TPM
DO45205
0 years, female, NA, stage:2, dead, 90 days
107.9
DO45249
0 years, male, NA, stage:1, alive, 630 days
59.2
DO23526
0 years, male, NA, stage:3, alive, 1050 days
39.0
DO23529
0 years, male, NA, stage:4, alive, 930 days
36.7
DO45259
0 years, male, NA, stage:3, alive, 330 days
33.0
DO45305
0 years, male, NA, stage:4, alive, 300 days
31.6
DO45283
0 years, male, NA, stage:3, alive, 510 days
30.9
DO23516
0 years, male, NA, stage:3, dead, 20 days
30.4
DO45185
0 years, male, NA, stage:2, alive, 600 days
28.5
DO45189
0 years, female, NA, stage:2, alive, 1200 days
25.3
DO45289
0 years, female, NA, stage:3, alive, 360 days
24.0
DO48719
0 years, male, NA, stage:2, alive, 690 days
23.4
DO45303
0 years, female, NA, stage:3, alive, 990 days
23.3
DO50859
0 years, male, NA, stage:2, alive, 180 days
22.7
DO45113
0 years, male, NA, stage:3, alive, 1560 days
21.2
DO45097
0 years, male, NA, stage:3, alive, 1620 days
20.8
DO45279
0 years, male, NA, stage:3, alive, 1290 days
20.0
DO50825
0 years, male, NA, stage:2, alive, 390 days
19.6
DO45093
0 years, male, NA, stage:2, dead, 720 days
18.0
DO45243
0 years, female, NA, stage:3, alive, 930 days
17.5
DO50855
0 years, male, NA, stage:2, alive, 570 days
17.3
DO45137
0 years, male, NA, stage:1, alive, 1320 days
16.4
DO45133
0 years, male, NA, stage:3, dead, 660 days
16.4
DO23514
0 years, male, NA, stage:2, alive, 1290 days
16.4
DO50817
0 years, male, NA, stage:2, alive, 390 days
16.0
DO48751
0 years, male, NA, stage:2, dead, 480 days
15.7
DO45277
0 years, male, NA, stage:3, alive, 600 days
15.3
DO48677
0 years, male, NA, stage:3, alive, 1140 days
15.1
DO48757
0 years, female, NA, stage:3, alive, 480 days
14.4
DO45155
0 years, male, NA, stage:2, alive, 2160 days
14.3
DO50806
0 years, male, NA, stage:4, alive, 540 days
14.1
DO23542
0 years, male, NA, stage:3, alive, 960 days
13.6
DO48727
0 years, female, NA, stage:2, dead, 390 days
13.5
DO45231
0 years, male, NA, stage:2, alive, 930 days
13.2
DO45223
0 years, male, NA, stage:4, alive, 1020 days
12.9
DO48717
0 years, male, NA, stage:4, dead, 180 days
12.5
DO45209
0 years, male, NA, stage:4, alive, 1350 days
12.5
DO45251
0 years, female, NA, stage:2, alive, 900 days
12.2
DO45203
0 years, female, NA, stage:2, alive, 1170 days
12.1
DO45129
0 years, male, NA, stage:3, alive, 1470 days
12.1
DO45213
0 years, male, NA, stage:1, alive, 1200 days
12.0
DO45233
0 years, male, NA, stage:3, alive, 900 days
12.0
DO23549
0 years, male, NA, stage:3, alive, 990 days
12.0
DO23533
0 years, male, NA, stage:2, alive, 900 days
12.0
DO23524
0 years, female, NA, stage:2, alive, 1050 days
11.9
DO45207
0 years, male, NA, stage:1, alive, 1050 days
11.6
DO45157
0 years, male, NA, stage:2, alive, 1980 days
11.2
DO48732
0 years, male, NA, stage:3, alive, 630 days
11.1
DO45171
0 years, male, NA, stage:3, alive, 600 days
10.9
DO23547
0 years, male, NA, stage:1, alive, 1020 days
10.9
DO48736
0 years, female, NA, stage:1, alive, 600 days
10.5
DO45275
0 years, male, NA, stage:3, dead, 10 days
10.4
DO48737
0 years, male, NA, stage:1, alive, 720 days
10.4
DO23539
0 years, male, NA, stage:1, alive, 1110 days
10.3
DO45159
0 years, male, NA, stage:3, alive, 1470 days
10.2
DO45247
0 years, female, NA, stage:2, alive, 210 days
10.2
DO45121
0 years, male, NA, stage:3, alive, 1530 days
10.2
DO45307
0 years, female, NA, stage:4, dead, 240 days
10.0
DO45092
0 years, male, NA, stage:4, dead, 1200 days
10.0
DO45253
0 years, male, NA, stage:2, alive, 870 days
10.0
DO45177
0 years, female, NA, stage:3, alive, 1260 days
9.9
DO45095
0 years, male, NA, stage:2, alive, 1620 days
9.9
DO50815
0 years, male, NA, stage:3, alive, 150 days
9.8
DO45267
0 years, male, NA, stage:3, dead, 570 days
9.3
DO48704
0 years, female, NA, stage:3, alive, 750 days
9.2
DO23530
0 years, male, NA, stage:4, dead, 180 days
9.1
DO45239
0 years, male, NA, stage:2, alive, 870 days
9.1
DO45201
0 years, male, NA, stage:1, alive, 900 days
9.0
DO48679
0 years, male, NA, stage:2, alive, 1200 days
9.0
DO45105
0 years, male, NA, stage:1, alive, 1680 days
9.0
DO45139
0 years, male, NA, stage:3, alive, 1320 days
8.8
DO45273
0 years, male, NA, stage:2, alive, 480 days
8.7
DO48743
0 years, female, NA, stage:2, alive, 570 days
8.7
DO45281
0 years, male, NA, stage:4, alive, 750 days
8.6
DO45103
0 years, male, NA, stage:3, alive, 450 days
8.6
DO48672
0 years, male, NA, stage:2, alive, 450 days
8.5
DO50789
0 years, female, NA, stage:2, alive, 570 days
8.5
DO45245
0 years, female, NA, stage:2, dead, 240 days
8.5
DO45301
0 years, male, NA, stage:2, dead, 1440 days
8.4
DO50793
0 years, male, NA, stage:4, alive, 540 days
8.4
DO23541
0 years, male, NA, stage:2, alive, 930 days
8.1
DO48682
0 years, female, NA, stage:3, dead, 120 days
8.0
DO45141
0 years, male, NA, stage:2, alive, 1320 days
8.0
DO45127
0 years, male, NA, stage:3, dead, 420 days
8.0
DO50839
0 years, female, NA, stage:3, alive, 330 days
7.9
DO50822
0 years, male, NA, stage:2, alive, 510 days
7.8
DO50783
0 years, male, NA, stage:3, alive, 480 days
7.8
DO45263
0 years, male, NA, stage:3, dead, 270 days
7.7
DO45099
0 years, male, NA, stage:3, alive, 1590 days
7.7
DO45149
0 years, female, NA, stage:2, alive, 1260 days
7.4
DO23540
0 years, male, NA, stage:1, alive, 750 days
7.4
DO45109
0 years, male, NA, stage:2, alive, 1590 days
7.1
DO50816
0 years, male, NA, stage:2, alive, 390 days
7.0
DO50778
0 years, male, NA, stage:4, alive, 630 days
7.0
DO23513
0 years, male, NA, stage:3, alive, 1200 days
6.9
DO45191
0 years, female, NA, stage:2, alive, 1200 days
6.8
DO23510
0 years, female, NA, stage:2, alive, 870 days
6.8
DO45119
0 years, male, NA, stage:3, dead, 510 days
6.5
DO50776
0 years, male, NA, stage:1, alive, 690 days
6.5
DO45167
0 years, male, NA, stage:2, dead, 1440 days
6.4
DO45219
0 years, male, NA, stage:2, alive, 1080 days
6.3
DO50818
0 years, male, NA, stage:2, alive, 510 days
6.1
DO23535
0 years, male, NA, stage:1, alive, 960 days
6.0
DO50791
0 years, female, NA, stage:1, dead, 480 days
5.9
DO45153
0 years, female, NA, stage:2, alive, 1380 days
5.9
DO45143
0 years, male, NA, stage:3, alive, 1290 days
5.9
DO48716
0 years, male, NA, stage:2, alive, 720 days
5.7
DO23515
0 years, male, NA, stage:2, alive, 1230 days
5.7
DO48700
0 years, female, NA, stage:2, alive, 810 days
5.7
DO45297
0 years, female, NA, stage:4, dead, 1260 days
5.7
DO48733
0 years, male, NA, stage:2, alive, 600 days
5.6
DO45181
0 years, female, NA, stage:2, alive, 1200 days
5.6
DO45161
0 years, male, NA, stage:2, dead, 540 days
5.5
DO45215
0 years, male, NA, stage:2, alive, 1170 days
5.4
DO23543
0 years, male, NA, stage:2, alive, 1020 days
5.3
DO45175
0 years, male, NA, stage:2, alive, 1140 days
5.1
DO45094
0 years, male, NA, stage:3, alive, 1650 days
5.1
DO50805
0 years, male, NA, stage:2, alive, 690 days
4.9
DO23536
0 years, male, NA, stage:2, alive, 930 days
4.9
DO50774
0 years, female, NA, stage:2, alive, 720 days
4.9
DO48747
0 years, male, NA, stage:3, alive, 540 days
4.9
DO23531
0 years, female, NA, stage:3, alive, 900 days
4.8
DO227801
0 years, female, NA, stage:1, alive, 660 days
4.7
DO23517
0 years, male, NA, stage:2, alive, 1200 days
4.6
DO48728
0 years, female, NA, stage:2, alive, 150 days
4.5
DO23527
0 years, male, NA, stage:1, alive, 1050 days
4.5
DO45255
0 years, male, NA, stage:3, alive, 720 days
4.5
DO23548
0 years, female, NA, stage:1, alive, 840 days
4.4
DO23546
0 years, male, NA, stage:2, alive, 1050 days
4.4
DO48695
0 years, male, NA, stage:2, alive, 720 days
4.3
DO45235
0 years, female, NA, stage:1, alive, 900 days
4.3
DO45135
0 years, male, NA, stage:1, alive, 1410 days
4.2
DO45227
0 years, female, NA, stage:2, alive, 1020 days
4.2
DO23544
0 years, male, NA, stage:2, alive, 960 days
4.2
DO23551
0 years, male, NA, stage:3, dead, 150 days
4.1
DO48681
0 years, male, NA, stage:2, alive, 900 days
4.1
DO48720
0 years, female, NA, stage:2, alive, 570 days
4.0
DO45125
0 years, male, NA, stage:3, alive, 1680 days
4.0
DO50845
0 years, male, NA, stage:3, alive, 210 days
3.9
DO48674
0 years, male, NA, stage:2, alive, 1260 days
3.7
DO45287
0 years, male, NA, stage:1, alive, 390 days
3.7
DO48697
0 years, female, NA, stage:2, dead, 810 days
3.7
DO45221
0 years, female, NA, stage:4, dead, 390 days
3.3
DO45195
0 years, male, NA, stage:1, alive, 390 days
3.2
DO23512
0 years, male, NA, stage:1, alive, 1260 days
3.1
DO45163
0 years, male, NA, stage:2, alive, 960 days
3.1
DO50857
0 years, male, NA, stage:2, alive, 210 days
3.1
DO45101
0 years, male, NA, stage:2, alive, 1680 days
3.1
DO50787
0 years, male, NA, stage:3, alive, 480 days
3.0
DO50803
0 years, female, NA, stage:1, alive, 540 days
3.0
DO48742
0 years, male, NA, stage:2, alive, 600 days
3.0
DO23523
0 years, male, NA, stage:3, alive, 1080 days
3.0
DO23511
0 years, female, NA, stage:3, dead, 180 days
2.9
DO45187
0 years, female, NA, stage:1, alive, 1260 days
2.8
DO23538
0 years, male, NA, stage:2, alive, 450 days
2.8
DO45229
0 years, male, NA, stage:1, alive, 990 days
2.8
DO45091
0 years, male, NA, stage:2, dead, 1320 days
2.8
DO45165
0 years, male, NA, stage:2, alive, 690 days
2.8
DO23508
0 years, female, NA, stage:2, alive, 390 days
2.7
DO45241
0 years, male, NA, stage:1, alive, 1080 days
2.7
DO45257
0 years, male, NA, stage:3, alive, 810 days
2.6
DO48760
0 years, female, NA, stage:2, alive, 690 days
2.6
DO48712
0 years, male, NA, stage:2, alive, 810 days
2.5
DO23532
0 years, female, NA, stage:1, alive, 960 days
2.4
DO227643
0 years, male, NA, stage:2, alive, 1260 days
2.4
DO50813
0 years, male, NA, stage:2, alive, 420 days
2.3
DO50800
0 years, male, NA, stage:2, alive, 510 days
2.3
DO45225
0 years, male, NA, stage:1, alive, 1050 days
2.2
DO50811
0 years, male, NA, stage:1, alive, 450 days
2.1
DO45269
0 years, male, NA, stage:3, alive, 750 days
2.1
DO48746
0 years, male, NA, stage:3, alive, 570 days
2.1
DO50829
0 years, male, NA, stage:3, alive, 570 days
2.1
DO48725
0 years, male, NA, stage:1, alive, 780 days
1.9
DO50799
0 years, female, NA, stage:2, alive, 540 days
1.9
DO48730
0 years, female, NA, stage:2, alive, 630 days
1.9
DO50809
0 years, male, NA, stage:3, dead, 720 days
1.8
DO50814
0 years, male, NA, stage:3, alive, 420 days
1.7
DO45261
0 years, male, NA, stage:3, alive, 990 days
1.7
DO23509
0 years, male, NA, stage:3, dead, 780 days
1.5
DO50804
0 years, male, NA, stage:2, alive, 720 days
1.4
DO23534
0 years, male, NA, stage:2, alive, 840 days
1.4
DO23552
0 years, female, NA, stage:1, alive, 810 days
1.4
DO50850
0 years, male, NA, stage:3, alive, 720 days
1.3
DO48761
0 years, male, NA, stage:2, alive, 870 days
1.1
DO45107
0 years, female, NA, stage:2, alive, 1710 days
1.1
DO45217
0 years, female, NA, stage:3, dead, 270 days
1.1
DO50844
0 years, male, NA, stage:4, alive, 300 days
1.0
DO48715
0 years, female, NA, stage:2, dead, 690 days
1.0
DO23550
0 years, male, NA, stage:1, alive, 990 days
0.9
DO45285
0 years, male, NA, stage:3, alive, 480 days
0.9
DO45173
0 years, male, NA, stage:3, alive, 1170 days
0.9
DO48693
0 years, male, NA, stage:2, alive, 900 days
0.9
DO50820
0 years, female, NA, stage:3, alive, 510 days
0.8
DO45179
0 years, female, NA, stage:2, alive, 600 days
0.8
DO45211
0 years, male, NA, stage:3, alive, 240 days
0.8
DO50819
0 years, female, NA, stage:2, alive, 510 days
0.8
DO48759
0 years, male, NA, stage:3, alive, 720 days
0.7
DO23528
0 years, female, NA, stage:2, alive, 1020 days
0.7
DO45096
0 years, male, NA, stage:2, dead, 1290 days
0.6
DO45123
0 years, female, NA, stage:2, dead, 570 days
0.6
DO45197
0 years, male, NA, stage:2, alive, 1170 days
0.6
DO50808
0 years, male, NA, stage:2, alive, 570 days
0.5
DO23518
0 years, male, NA, stage:2, alive, 1320 days
0.5
DO45299
0 years, female, NA, stage:1, alive, 1440 days
0.5
DO50798
0 years, male, NA, stage:3, dead, 30 days
0.5
DO23519
0 years, male, NA, stage:3, alive, 630 days
0.4
DO23537
0 years, male, NA, stage:2, dead, 900 days
0.4
DO50840
0 years, male, NA, stage:2, alive, 330 days
0.4
DO45265
0 years, male, NA, stage:3, alive, 1020 days
0.4
DO45111
0 years, male, NA, stage:2, alive, 1590 days
0.4
DO50807
0 years, male, NA, stage:1, alive, 540 days
0.4
DO45169
0 years, male, NA, stage:3, alive, 1350 days
0.4
DO45183
0 years, female, NA, stage:2, dead, 570 days
0.4
DO23545
0 years, male, NA, stage:2, dead, 570 days
0.3
DO45193
0 years, female, NA, stage:4, dead, 120 days
0.2
DO50785
0 years, male, NA, stage:4, dead, 90 days
0.2
DO48706
0 years, male, NA, stage:2, alive, 870 days
0.2
DO23521
0 years, male, NA, stage:3, alive, 1110 days
0.2
DO48701
0 years, male, NA, stage:2, alive, 780 days
0.2
DO45145
0 years, male, NA, stage:3, dead, 60 days
0.2
DO45117
0 years, female, NA, stage:2, dead, 1110 days
0.2
DO50802
0 years, male, NA, stage:2, alive, 930 days
0.2
DO23525
0 years, male, NA, stage:4, alive, 1050 days
0.2
DO45199
0 years, female, NA, stage:2, alive, 1350 days
0.1
DO45237
0 years, male, NA, stage:2, alive, 900 days
0.1
DO50832
0 years, male, NA, stage:3, alive, 90 days
0.1
DO45115
0 years, male, NA, stage:2, alive, 840 days
0.1
DO48721
0 years, female, NA, stage:1, alive, 900 days
0.1
DO48723
0 years, male, NA, stage:1, alive, 600 days
0.1
DO45131
0 years, male, NA, stage:4, dead, 360 days
0.1
DO48741
0 years, male, NA, stage:3, alive, 240 days
0.0
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
128
Normal
5.2
124
Normal
5.1
112
Tumor
5.0
114
Normal
4.9
127
Tumor
4.9
126
Normal
4.9
123
Tumor
4.5
113
Tumor
4.5
125
Tumor
4.3
926
Normal
1.4
954
Normal
1.3
131
Tumor
1.3
636
Normal
1.1
497
Tumor
1.0
515
Tumor
0.9
425
Tumor
0.9
284
Normal
0.9
642
Normal
0.9
685
Tumor
0.9
616
Normal
0.9
456
Normal
0.9
342
Normal
0.9
354
Normal
0.9
468
Normal
0.9
466
Normal
0.8
298
Normal
0.8
478
Normal
0.8
618
Normal
0.8
524
Normal
0.8
925
Tumor
0.8
514
Normal
0.8
431
Tumor
0.8
352
Normal
0.8
358
Normal
0.7
516
Normal
0.7
944
Normal
0.7
344
Normal
0.7
278
Normal
0.7
628
Normal
0.7
332
Normal
0.7
464
Normal
0.7
938
Normal
0.7
388
Normal
0.7
452
Normal
0.7
312
Normal
0.7
976
Normal
0.7
483
Tumor
0.6
285
Tumor
0.6
958
Normal
0.6
392
Normal
0.6
228
Normal
0.6
568
Normal
0.6
224
Normal
0.6
394
Normal
0.6
498
Normal
0.6
816
Normal
0.6
444
Normal
0.6
713
Tumor
0.6
924
Normal
0.6
864
Normal
0.6
574
Normal
0.6
943
Tumor
0.6
314
Normal
0.5
686
Normal
0.5
666
Normal
0.5
426
Normal
0.5
353
Tumor
0.5
1016
Normal
0.5
914
Normal
0.5
396
Normal
0.5
341
Tumor
0.5
474
Normal
0.5
824
Normal
0.5
861
Tumor
0.5
195
Tumor
0.5
865
Tumor
0.5
743
Tumor
0.5
132
Normal
0.5
412
Normal
0.5
662
Normal
0.5
494
Normal
0.5
852
Normal
0.5
416
Normal
0.5
672
Normal
0.5
415
Tumor
0.5
716
Normal
0.5
212
Normal
0.5
1042
Normal
0.4
882
Normal
0.4
422
Normal
0.4
738
Normal
0.4
966
Normal
0.4
386
Normal
0.4
136
Normal
0.4
663
Tumor
0.4
493
Tumor
0.4
698
Normal
0.4
558
Normal
0.4
484
Normal
0.4
447
Tumor
0.4
385
Tumor
0.4
534
Normal
0.4
232
Normal
0.4
884
Normal
0.4
617
Tumor
0.4
528
Normal
0.4
536
Normal
0.4
952
Normal
0.4
145
Tumor
0.4
384
Normal
0.4
488
Normal
0.4
1032
Normal
0.4
472
Normal
0.4
572
Normal
0.4
564
Normal
0.4
867
Tumor
0.4
421
Tumor
0.4
1022
Normal
0.4
138
Normal
0.4
956
Normal
0.4
744
Normal
0.3
878
Normal
0.3
364
Normal
0.3
714
Normal
0.3
922
Normal
0.3
482
Normal
0.3
424
Normal
0.3
393
Tumor
0.3
297
Tumor
0.3
862
Normal
0.3
916
Normal
0.3
912
Normal
0.3
222
Normal
0.3
1046
Normal
0.3
357
Tumor
0.3
1044
Normal
0.3
213
Tumor
0.3
723
Tumor
0.3
258
Normal
0.3
648
Normal
0.3
563
Tumor
0.3
467
Tumor
0.3
432
Normal
0.3
492
Normal
0.3
538
Normal
0.3
868
Normal
0.3
866
Normal
0.3
554
Normal
0.3
742
Normal
0.3
664
Normal
0.3
414
Normal
0.3
363
Tumor
0.3
818
Normal
0.2
615
Tumor
0.2
696
Normal
0.2
858
Normal
0.2
518
Normal
0.2
545
Tumor
0.2
982
Normal
0.2
728
Normal
0.2
968
Normal
0.2
142
Normal
0.2
328
Normal
0.2
146
Normal
0.2
355
Tumor
0.2
428
Normal
0.2
218
Normal
0.2
231
Tumor
0.2
964
Normal
0.2
214
Normal
0.2
343
Tumor
0.2
331
Tumor
0.2
196
Normal
0.2
362
Normal
0.2
1043
Tumor
0.2
1028
Normal
0.2
918
Normal
0.2
366
Normal
0.2
286
Normal
0.2
546
Normal
0.2
455
Tumor
0.2
192
Normal
0.2
446
Normal
0.2
627
Tumor
0.2
874
Normal
0.2
473
Tumor
0.2
462
Normal
0.2
272
Normal
0.2
697
Tumor
0.1
477
Tumor
0.1
262
Normal
0.1
737
Tumor
0.1
823
Tumor
0.1
917
Tumor
0.1
137
Tumor
0.1
526
Normal
0.1
978
Normal
0.1
967
Tumor
0.1
436
Normal
0.1
261
Tumor
0.1
448
Normal
0.1
427
Tumor
0.1
368
Normal
0.1
984
Normal
0.1
671
Tumor
0.1
1014
Normal
0.1
376
Normal
0.1
356
Normal
0.1
1041
Tumor
0.1
722
Normal
0.1
267
Tumor
0.1
721
Tumor
0.1
268
Normal
0.1
881
Tumor
0.1
395
Tumor
0.0
211
Tumor
0.0
857
Tumor
0.0
1026
Normal
0.0
955
Tumor
0.0
434
Normal
0.0
277
Tumor
0.0
963
Tumor
0.0
111
Normal
0.0
313
Tumor
0.0
443
Tumor
-0.1
913
Tumor
-0.1
977
Tumor
-0.1
327
Tumor
-0.1
567
Tumor
-0.1
863
Tumor
-0.1
445
Tumor
-0.1
1013
Tumor
-0.1
461
Tumor
-0.1
715
Tumor
-0.1
1045
Tumor
-0.1
217
Tumor
-0.1
911
Tumor
-0.1
227
Tumor
-0.1
463
Tumor
-0.1
883
Tumor
-0.1
815
Tumor
-0.1
923
Tumor
-0.1
641
Tumor
-0.1
451
Tumor
-0.2
257
Tumor
-0.2
271
Tumor
-0.2
191
Tumor
-0.2
525
Tumor
-0.2
877
Tumor
-0.2
311
Tumor
-0.2
1021
Tumor
-0.2
661
Tumor
-0.2
665
Tumor
-0.2
527
Tumor
-0.3
361
Tumor
-0.3
465
Tumor
-0.3
557
Tumor
-0.3
727
Tumor
-0.3
411
Tumor
-0.3
383
Tumor
-0.3
365
Tumor
-0.3
435
Tumor
-0.3
571
Tumor
-0.3
1015
Tumor
-0.3
724
Normal
-0.3
351
Tumor
-0.3
873
Tumor
-0.3
975
Tumor
-0.3
481
Tumor
-0.4
391
Tumor
-0.4
523
Tumor
-0.4
981
Tumor
-0.4
433
Tumor
-0.4
983
Tumor
-0.4
223
Tumor
-0.4
553
Tumor
-0.4
573
Tumor
-0.4
635
Tumor
-0.4
695
Tumor
-0.4
423
Tumor
-0.5
1025
Tumor
-0.5
387
Tumor
-0.5
647
Tumor
-0.5
491
Tumor
-0.5
517
Tumor
-0.5
965
Tumor
-0.5
135
Tumor
-0.5
283
Tumor
-0.5
141
Tumor
-0.5
413
Tumor
-0.6
817
Tumor
-0.6
375
Tumor
-0.7
921
Tumor
-0.7
915
Tumor
-0.7
513
Tumor
-0.7
221
Tumor
-0.7
957
Tumor
-0.8
533
Tumor
-0.8
471
Tumor
-0.8
535
Tumor
-0.8
741
Tumor
-0.9
537
Tumor
-0.9
487
Tumor
-1.0
367
Tumor
-1.1
937
Tumor
-1.2
951
Tumor
-1.4
953
Tumor
-1.6
1027
Tumor
-1.7
1031
Tumor
-1.7
851
Tumor
-1.8
813
Tumor
N/A
814
Normal
N/A
147
Tumor
N/A
148
Normal
N/A
161
Tumor
N/A
162
Normal
N/A
171
Tumor
N/A
172
Normal
N/A
185
Tumor
N/A
186
Normal
N/A
187
Tumor
N/A
188
Normal
N/A
745
Tumor
N/A
746
Normal
N/A
755
Tumor
N/A
756
Normal
N/A
777
Tumor
N/A
778
Normal
N/A
785
Tumor
N/A
786
Normal
N/A
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
