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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
MSRB2 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
14.8
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
85.0
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
42.9
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
40.0
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
37.5
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
36.4
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
35.6
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
33.9
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
33.2
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
32.1
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
31.8
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
31.3
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
31.3
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
29.3
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
28.9
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
28.6
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
27.7
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
27.5
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
27.4
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
27.0
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
27.0
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
26.3
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
26.3
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
26.2
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
25.4
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
25.2
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
25.2
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
25.2
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
25.1
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
24.5
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
24.4
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
24.3
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
24.1
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
23.9
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
23.5
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
23.2
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
23.0
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
22.8
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
22.8
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
22.8
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
22.7
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
22.6
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
22.6
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
22.5
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
22.5
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
22.4
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
22.2
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
22.1
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
21.9
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
21.9
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
20.9
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
20.8
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
20.7
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
20.1
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
20.1
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
20.0
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
19.9
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
19.7
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
19.7
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
19.5
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
19.5
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
19.4
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
19.4
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
19.2
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
19.2
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
19.2
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
19.2
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
19.1
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
19.0
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
19.0
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
18.9
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
18.9
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
18.9
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
18.7
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
18.7
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
18.7
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
18.7
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
18.6
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
18.4
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
18.4
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
18.2
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
18.2
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
18.2
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
18.1
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
18.1
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
17.8
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
17.7
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
17.7
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
17.6
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
17.5
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
17.3
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
17.1
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
16.9
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
16.7
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
16.7
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
16.6
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
16.6
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
16.5
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
16.5
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
16.4
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
16.3
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
16.3
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
16.3
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
16.3
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
16.3
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
16.2
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
16.1
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
16.1
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
16.0
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
16.0
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
15.9
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
15.9
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
15.9
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
15.9
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
15.8
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
15.8
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
15.7
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
15.7
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
15.7
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
15.7
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
15.7
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
15.6
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
15.6
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
15.6
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
15.6
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
15.6
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
15.5
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
15.5
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
15.5
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
15.5
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
15.4
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
15.4
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
15.4
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
15.3
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
15.2
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
15.2
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
15.1
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
15.1
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
15.0
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
15.0
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
15.0
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
15.0
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
15.0
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
14.9
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
14.9
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
14.8
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
14.8
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
14.7
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
14.7
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
14.6
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
14.5
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
14.5
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
14.5
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
14.4
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
14.4
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
14.3
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
14.3
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
14.3
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
14.2
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
14.1
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
14.1
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
14.1
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
14.1
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
14.1
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
14.0
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
14.0
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
13.9
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
13.9
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
13.9
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
13.9
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
13.8
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
13.8
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
13.7
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
13.6
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
13.6
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
13.6
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
13.6
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
13.6
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
13.5
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
13.5
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
13.5
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
13.4
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
13.3
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
13.3
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
13.3
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
13.2
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
13.2
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
13.2
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
13.1
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
13.1
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
13.1
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
13.1
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
13.0
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
13.0
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
13.0
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
12.8
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
12.8
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
12.8
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
12.7
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
12.7
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
12.7
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
12.7
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
12.6
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
12.6
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
12.6
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
12.6
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
12.6
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
12.6
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
12.6
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
12.6
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
12.5
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
12.5
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
12.5
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
12.4
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
12.4
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
12.3
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
12.3
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
12.2
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
12.2
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
12.2
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
12.2
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
12.1
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
12.1
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
12.1
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
12.0
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
11.9
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
11.9
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
11.9
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
11.8
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
11.8
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
11.8
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
11.7
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
11.7
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
11.7
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
11.6
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
11.6
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
11.6
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
11.6
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
11.6
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
11.6
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
11.6
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
11.6
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
11.6
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
11.5
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
11.5
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
11.5
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
11.4
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
11.4
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
11.4
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
11.4
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
11.4
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
11.4
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
11.4
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
11.3
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
11.3
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
11.3
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
11.3
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
11.2
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
11.2
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
11.2
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
11.2
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
11.1
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
11.1
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
11.0
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
10.9
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
10.9
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
10.9
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
10.8
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
10.8
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
10.7
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
10.7
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
10.6
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
10.6
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
10.6
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
10.6
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
10.6
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
10.5
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
10.5
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
10.5
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
10.5
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
10.5
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
10.5
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
10.1
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
10.0
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
10.0
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
10.0
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
10.0
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
9.9
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
9.8
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
9.8
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
9.8
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
9.8
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
9.8
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
9.7
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
9.7
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
9.7
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
9.7
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
9.7
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
9.6
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
9.6
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
9.6
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
9.6
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
9.5
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
9.5
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
9.5
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
9.4
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
9.4
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
9.3
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
9.3
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
9.2
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
9.2
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
9.0
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
8.9
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
8.9
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
8.9
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
8.8
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
8.8
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
8.8
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
8.7
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
8.6
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
8.6
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
8.5
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
8.5
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
8.3
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
8.3
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
8.3
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
8.3
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
8.2
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
8.2
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
8.2
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
8.0
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
8.0
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
7.9
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
7.8
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
7.8
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
7.6
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
7.5
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
7.5
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
7.4
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
7.4
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
7.3
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
7.3
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
7.2
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
7.2
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
7.1
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
7.1
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
7.0
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
7.0
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
6.7
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
6.7
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
6.6
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
6.6
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
6.3
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
6.1
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
6.0
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
5.8
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
5.7
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
5.6
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
5.4
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
5.3
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
5.3
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
5.3
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
MSRB2 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
21.9
Number of samples
231
Samples
Sample
Description
TPM
DO48741
0 years, male, NA, stage:3, alive, 240 days
96.1
DO50839
0 years, female, NA, stage:3, alive, 330 days
85.3
DO23526
0 years, male, NA, stage:3, alive, 1050 days
78.0
DO23513
0 years, male, NA, stage:3, alive, 1200 days
67.2
DO48747
0 years, male, NA, stage:3, alive, 540 days
66.4
DO45205
0 years, female, NA, stage:2, dead, 90 days
58.6
DO45289
0 years, female, NA, stage:3, alive, 360 days
56.1
DO45119
0 years, male, NA, stage:3, dead, 510 days
50.5
DO45209
0 years, male, NA, stage:4, alive, 1350 days
50.3
DO50783
0 years, male, NA, stage:3, alive, 480 days
49.8
DO45171
0 years, male, NA, stage:3, alive, 600 days
45.9
DO23534
0 years, male, NA, stage:2, alive, 840 days
43.2
DO50802
0 years, male, NA, stage:2, alive, 930 days
42.3
DO48737
0 years, male, NA, stage:1, alive, 720 days
41.7
DO48759
0 years, male, NA, stage:3, alive, 720 days
39.9
DO48697
0 years, female, NA, stage:2, dead, 810 days
39.7
DO50814
0 years, male, NA, stage:3, alive, 420 days
38.6
DO23511
0 years, female, NA, stage:3, dead, 180 days
38.5
DO23521
0 years, male, NA, stage:3, alive, 1110 days
38.4
DO45149
0 years, female, NA, stage:2, alive, 1260 days
36.6
DO23532
0 years, female, NA, stage:1, alive, 960 days
36.3
DO45129
0 years, male, NA, stage:3, alive, 1470 days
36.0
DO48672
0 years, male, NA, stage:2, alive, 450 days
36.0
DO23508
0 years, female, NA, stage:2, alive, 390 days
36.0
DO50809
0 years, male, NA, stage:3, dead, 720 days
33.9
DO45145
0 years, male, NA, stage:3, dead, 60 days
33.6
DO50808
0 years, male, NA, stage:2, alive, 570 days
33.2
DO23516
0 years, male, NA, stage:3, dead, 20 days
33.0
DO45217
0 years, female, NA, stage:3, dead, 270 days
32.6
DO45092
0 years, male, NA, stage:4, dead, 1200 days
32.5
DO45259
0 years, male, NA, stage:3, alive, 330 days
32.3
DO50791
0 years, female, NA, stage:1, dead, 480 days
31.6
DO45241
0 years, male, NA, stage:1, alive, 1080 days
31.6
DO48695
0 years, male, NA, stage:2, alive, 720 days
31.5
DO45107
0 years, female, NA, stage:2, alive, 1710 days
31.4
DO45131
0 years, male, NA, stage:4, dead, 360 days
30.5
DO45133
0 years, male, NA, stage:3, dead, 660 days
30.3
DO23525
0 years, male, NA, stage:4, alive, 1050 days
30.2
DO48674
0 years, male, NA, stage:2, alive, 1260 days
30.2
DO45183
0 years, female, NA, stage:2, dead, 570 days
30.0
DO45097
0 years, male, NA, stage:3, alive, 1620 days
30.0
DO45095
0 years, male, NA, stage:2, alive, 1620 days
29.4
DO50811
0 years, male, NA, stage:1, alive, 450 days
29.0
DO50817
0 years, male, NA, stage:2, alive, 390 days
28.9
DO45159
0 years, male, NA, stage:3, alive, 1470 days
28.6
DO48721
0 years, female, NA, stage:1, alive, 900 days
28.5
DO45155
0 years, male, NA, stage:2, alive, 2160 days
28.5
DO50816
0 years, male, NA, stage:2, alive, 390 days
28.1
DO48723
0 years, male, NA, stage:1, alive, 600 days
28.0
DO23509
0 years, male, NA, stage:3, dead, 780 days
28.0
DO48701
0 years, male, NA, stage:2, alive, 780 days
27.9
DO50806
0 years, male, NA, stage:4, alive, 540 days
27.8
DO23512
0 years, male, NA, stage:1, alive, 1260 days
27.7
DO45125
0 years, male, NA, stage:3, alive, 1680 days
27.7
DO23539
0 years, male, NA, stage:1, alive, 1110 days
27.6
DO48751
0 years, male, NA, stage:2, dead, 480 days
27.4
DO45179
0 years, female, NA, stage:2, alive, 600 days
27.2
DO50776
0 years, male, NA, stage:1, alive, 690 days
27.1
DO48725
0 years, male, NA, stage:1, alive, 780 days
26.9
DO45255
0 years, male, NA, stage:3, alive, 720 days
26.9
DO23529
0 years, male, NA, stage:4, alive, 930 days
26.7
DO50813
0 years, male, NA, stage:2, alive, 420 days
26.7
DO50825
0 years, male, NA, stage:2, alive, 390 days
26.6
DO50798
0 years, male, NA, stage:3, dead, 30 days
26.5
DO23535
0 years, male, NA, stage:1, alive, 960 days
25.8
DO48757
0 years, female, NA, stage:3, alive, 480 days
25.4
DO45243
0 years, female, NA, stage:3, alive, 930 days
24.6
DO45109
0 years, male, NA, stage:2, alive, 1590 days
24.5
DO45153
0 years, female, NA, stage:2, alive, 1380 days
24.4
DO45173
0 years, male, NA, stage:3, alive, 1170 days
24.3
DO48715
0 years, female, NA, stage:2, dead, 690 days
24.1
DO45143
0 years, male, NA, stage:3, alive, 1290 days
24.1
DO45185
0 years, male, NA, stage:2, alive, 600 days
24.0
DO45201
0 years, male, NA, stage:1, alive, 900 days
23.7
DO23528
0 years, female, NA, stage:2, alive, 1020 days
23.6
DO50799
0 years, female, NA, stage:2, alive, 540 days
23.6
DO48679
0 years, male, NA, stage:2, alive, 1200 days
23.5
DO23519
0 years, male, NA, stage:3, alive, 630 days
23.4
DO45096
0 years, male, NA, stage:2, dead, 1290 days
23.3
DO48719
0 years, male, NA, stage:2, alive, 690 days
23.2
DO45261
0 years, male, NA, stage:3, alive, 990 days
23.2
DO45229
0 years, male, NA, stage:1, alive, 990 days
23.0
DO45277
0 years, male, NA, stage:3, alive, 600 days
22.9
DO50805
0 years, male, NA, stage:2, alive, 690 days
22.8
DO50785
0 years, male, NA, stage:4, dead, 90 days
22.5
DO45305
0 years, male, NA, stage:4, alive, 300 days
22.4
DO45267
0 years, male, NA, stage:3, dead, 570 days
22.3
DO45219
0 years, male, NA, stage:2, alive, 1080 days
22.2
DO48700
0 years, female, NA, stage:2, alive, 810 days
21.9
DO45203
0 years, female, NA, stage:2, alive, 1170 days
21.8
DO23536
0 years, male, NA, stage:2, alive, 930 days
21.6
DO48743
0 years, female, NA, stage:2, alive, 570 days
21.5
DO48677
0 years, male, NA, stage:3, alive, 1140 days
21.5
DO23540
0 years, male, NA, stage:1, alive, 750 days
21.4
DO45249
0 years, male, NA, stage:1, alive, 630 days
21.4
DO23514
0 years, male, NA, stage:2, alive, 1290 days
21.3
DO45101
0 years, male, NA, stage:2, alive, 1680 days
21.2
DO48717
0 years, male, NA, stage:4, dead, 180 days
21.1
DO48746
0 years, male, NA, stage:3, alive, 570 days
20.7
DO45285
0 years, male, NA, stage:3, alive, 480 days
20.7
DO23546
0 years, male, NA, stage:2, alive, 1050 days
20.6
DO23548
0 years, female, NA, stage:1, alive, 840 days
20.6
DO50859
0 years, male, NA, stage:2, alive, 180 days
20.4
DO50820
0 years, female, NA, stage:3, alive, 510 days
20.3
DO50818
0 years, male, NA, stage:2, alive, 510 days
20.2
DO48736
0 years, female, NA, stage:1, alive, 600 days
19.9
DO50844
0 years, male, NA, stage:4, alive, 300 days
19.7
DO50832
0 years, male, NA, stage:3, alive, 90 days
19.6
DO45275
0 years, male, NA, stage:3, dead, 10 days
19.4
DO50804
0 years, male, NA, stage:2, alive, 720 days
19.3
DO48712
0 years, male, NA, stage:2, alive, 810 days
19.2
DO45281
0 years, male, NA, stage:4, alive, 750 days
19.2
DO45099
0 years, male, NA, stage:3, alive, 1590 days
19.0
DO45167
0 years, male, NA, stage:2, dead, 1440 days
18.5
DO45233
0 years, male, NA, stage:3, alive, 900 days
18.5
DO50774
0 years, female, NA, stage:2, alive, 720 days
18.4
DO45121
0 years, male, NA, stage:3, alive, 1530 days
18.2
DO48706
0 years, male, NA, stage:2, alive, 870 days
18.0
DO45221
0 years, female, NA, stage:4, dead, 390 days
18.0
DO45207
0 years, male, NA, stage:1, alive, 1050 days
18.0
DO48760
0 years, female, NA, stage:2, alive, 690 days
17.9
DO45161
0 years, male, NA, stage:2, dead, 540 days
17.8
DO50793
0 years, male, NA, stage:4, alive, 540 days
17.7
DO45141
0 years, male, NA, stage:2, alive, 1320 days
17.7
DO23527
0 years, male, NA, stage:1, alive, 1050 days
17.6
DO45123
0 years, female, NA, stage:2, dead, 570 days
17.3
DO45103
0 years, male, NA, stage:3, alive, 450 days
17.3
DO45177
0 years, female, NA, stage:3, alive, 1260 days
17.2
DO50789
0 years, female, NA, stage:2, alive, 570 days
17.2
DO50845
0 years, male, NA, stage:3, alive, 210 days
17.0
DO48761
0 years, male, NA, stage:2, alive, 870 days
16.9
DO23542
0 years, male, NA, stage:3, alive, 960 days
16.8
DO23550
0 years, male, NA, stage:1, alive, 990 days
16.7
DO45115
0 years, male, NA, stage:2, alive, 840 days
16.7
DO45253
0 years, male, NA, stage:2, alive, 870 days
16.6
DO45181
0 years, female, NA, stage:2, alive, 1200 days
16.6
DO50855
0 years, male, NA, stage:2, alive, 570 days
16.5
DO48742
0 years, male, NA, stage:2, alive, 600 days
16.4
DO50829
0 years, male, NA, stage:3, alive, 570 days
16.3
DO23510
0 years, female, NA, stage:2, alive, 870 days
16.3
DO23533
0 years, male, NA, stage:2, alive, 900 days
16.3
DO45193
0 years, female, NA, stage:4, dead, 120 days
16.2
DO45197
0 years, male, NA, stage:2, alive, 1170 days
16.0
DO48681
0 years, male, NA, stage:2, alive, 900 days
15.9
DO50800
0 years, male, NA, stage:2, alive, 510 days
15.9
DO50807
0 years, male, NA, stage:1, alive, 540 days
15.7
DO45169
0 years, male, NA, stage:3, alive, 1350 days
15.7
DO23545
0 years, male, NA, stage:2, dead, 570 days
15.6
DO45117
0 years, female, NA, stage:2, dead, 1110 days
15.6
DO45111
0 years, male, NA, stage:2, alive, 1590 days
15.5
DO50819
0 years, female, NA, stage:2, alive, 510 days
15.5
DO45094
0 years, male, NA, stage:3, alive, 1650 days
15.4
DO45093
0 years, male, NA, stage:2, dead, 720 days
15.4
DO45163
0 years, male, NA, stage:2, alive, 960 days
15.3
DO45237
0 years, male, NA, stage:2, alive, 900 days
15.2
DO45251
0 years, female, NA, stage:2, alive, 900 days
15.2
DO45263
0 years, male, NA, stage:3, dead, 270 days
15.1
DO227801
0 years, female, NA, stage:1, alive, 660 days
15.0
DO45269
0 years, male, NA, stage:3, alive, 750 days
15.0
DO45175
0 years, male, NA, stage:2, alive, 1140 days
15.0
DO45165
0 years, male, NA, stage:2, alive, 690 days
15.0
DO45135
0 years, male, NA, stage:1, alive, 1410 days
14.9
DO45195
0 years, male, NA, stage:1, alive, 390 days
14.9
DO23531
0 years, female, NA, stage:3, alive, 900 days
14.8
DO45303
0 years, female, NA, stage:3, alive, 990 days
14.8
DO23518
0 years, male, NA, stage:2, alive, 1320 days
14.7
DO227643
0 years, male, NA, stage:2, alive, 1260 days
14.7
DO23543
0 years, male, NA, stage:2, alive, 1020 days
14.6
DO50787
0 years, male, NA, stage:3, alive, 480 days
14.5
DO23515
0 years, male, NA, stage:2, alive, 1230 days
14.5
DO23549
0 years, male, NA, stage:3, alive, 990 days
14.5
DO45265
0 years, male, NA, stage:3, alive, 1020 days
14.4
DO45239
0 years, male, NA, stage:2, alive, 870 days
14.4
DO45257
0 years, male, NA, stage:3, alive, 810 days
14.3
DO45307
0 years, female, NA, stage:4, dead, 240 days
14.3
DO48693
0 years, male, NA, stage:2, alive, 900 days
14.3
DO45223
0 years, male, NA, stage:4, alive, 1020 days
14.3
DO23524
0 years, female, NA, stage:2, alive, 1050 days
14.2
DO23538
0 years, male, NA, stage:2, alive, 450 days
14.1
DO23544
0 years, male, NA, stage:2, alive, 960 days
14.0
DO45199
0 years, female, NA, stage:2, alive, 1350 days
13.8
DO45139
0 years, male, NA, stage:3, alive, 1320 days
13.7
DO45297
0 years, female, NA, stage:4, dead, 1260 days
13.7
DO23547
0 years, male, NA, stage:1, alive, 1020 days
13.6
DO50850
0 years, male, NA, stage:3, alive, 720 days
13.5
DO45283
0 years, male, NA, stage:3, alive, 510 days
13.5
DO45187
0 years, female, NA, stage:1, alive, 1260 days
13.4
DO45273
0 years, male, NA, stage:2, alive, 480 days
13.4
DO45105
0 years, male, NA, stage:1, alive, 1680 days
13.2
DO45213
0 years, male, NA, stage:1, alive, 1200 days
13.1
DO50803
0 years, female, NA, stage:1, alive, 540 days
13.0
DO45279
0 years, male, NA, stage:3, alive, 1290 days
12.9
DO45235
0 years, female, NA, stage:1, alive, 900 days
12.9
DO48732
0 years, male, NA, stage:3, alive, 630 days
12.7
DO23541
0 years, male, NA, stage:2, alive, 930 days
12.7
DO48704
0 years, female, NA, stage:3, alive, 750 days
12.6
DO48716
0 years, male, NA, stage:2, alive, 720 days
12.4
DO45215
0 years, male, NA, stage:2, alive, 1170 days
12.4
DO45287
0 years, male, NA, stage:1, alive, 390 days
12.0
DO45245
0 years, female, NA, stage:2, dead, 240 days
12.0
DO48682
0 years, female, NA, stage:3, dead, 120 days
11.8
DO45137
0 years, male, NA, stage:1, alive, 1320 days
11.5
DO45191
0 years, female, NA, stage:2, alive, 1200 days
11.5
DO45157
0 years, male, NA, stage:2, alive, 1980 days
11.4
DO23551
0 years, male, NA, stage:3, dead, 150 days
11.3
DO50778
0 years, male, NA, stage:4, alive, 630 days
11.3
DO23517
0 years, male, NA, stage:2, alive, 1200 days
10.9
DO45113
0 years, male, NA, stage:3, alive, 1560 days
10.9
DO45091
0 years, male, NA, stage:2, dead, 1320 days
10.9
DO45231
0 years, male, NA, stage:2, alive, 930 days
10.5
DO48730
0 years, female, NA, stage:2, alive, 630 days
10.3
DO48733
0 years, male, NA, stage:2, alive, 600 days
10.3
DO23537
0 years, male, NA, stage:2, dead, 900 days
10.2
DO45189
0 years, female, NA, stage:2, alive, 1200 days
10.0
DO48728
0 years, female, NA, stage:2, alive, 150 days
9.9
DO48727
0 years, female, NA, stage:2, dead, 390 days
9.6
DO50840
0 years, male, NA, stage:2, alive, 330 days
9.1
DO50857
0 years, male, NA, stage:2, alive, 210 days
9.0
DO45299
0 years, female, NA, stage:1, alive, 1440 days
8.7
DO23530
0 years, male, NA, stage:4, dead, 180 days
8.2
DO23523
0 years, male, NA, stage:3, alive, 1080 days
8.1
DO45225
0 years, male, NA, stage:1, alive, 1050 days
7.9
DO45227
0 years, female, NA, stage:2, alive, 1020 days
7.8
DO45211
0 years, male, NA, stage:3, alive, 240 days
7.7
DO50822
0 years, male, NA, stage:2, alive, 510 days
7.2
DO50815
0 years, male, NA, stage:3, alive, 150 days
7.1
DO45301
0 years, male, NA, stage:2, dead, 1440 days
7.1
DO45247
0 years, female, NA, stage:2, alive, 210 days
7.1
DO45127
0 years, male, NA, stage:3, dead, 420 days
6.5
DO48720
0 years, female, NA, stage:2, alive, 570 days
6.4
DO23552
0 years, female, NA, stage:1, alive, 810 days
6.2
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
1013
Tumor
1.5
911
Tumor
1.4
627
Tumor
1.2
515
Tumor
1.0
867
Tumor
0.9
915
Tumor
0.9
513
Tumor
0.9
465
Tumor
0.9
231
Tumor
0.9
861
Tumor
0.9
477
Tumor
0.9
1041
Tumor
0.7
695
Tumor
0.7
553
Tumor
0.7
462
Normal
0.7
824
Normal
0.7
921
Tumor
0.7
741
Tumor
0.7
715
Tumor
0.6
361
Tumor
0.6
261
Tumor
0.6
474
Normal
0.6
755
Tumor
0.6
698
Normal
0.6
786
Normal
0.6
162
Normal
0.6
172
Normal
0.6
878
Normal
0.5
483
Tumor
0.5
363
Tumor
0.5
1043
Tumor
0.5
484
Normal
0.5
663
Tumor
0.5
411
Tumor
0.5
1022
Normal
0.5
554
Normal
0.5
858
Normal
0.5
713
Tumor
0.5
473
Tumor
0.5
862
Normal
0.5
342
Normal
0.5
1032
Normal
0.5
1025
Tumor
0.5
448
Normal
0.5
616
Normal
0.5
746
Normal
0.5
472
Normal
0.4
128
Normal
0.4
756
Normal
0.4
722
Normal
0.4
148
Normal
0.4
452
Normal
0.4
222
Normal
0.4
466
Normal
0.4
981
Tumor
0.4
517
Tumor
0.4
394
Normal
0.4
865
Tumor
0.4
186
Normal
0.4
882
Normal
0.4
866
Normal
0.4
742
Normal
0.4
964
Normal
0.4
912
Normal
0.3
564
Normal
0.3
423
Tumor
0.3
196
Normal
0.3
376
Normal
0.3
514
Normal
0.3
161
Tumor
0.3
864
Normal
0.3
738
Normal
0.3
422
Normal
0.3
328
Normal
0.3
396
Normal
0.3
388
Normal
0.3
636
Normal
0.3
171
Tumor
0.3
534
Normal
0.3
412
Normal
0.3
881
Tumor
0.3
482
Normal
0.3
428
Normal
0.3
365
Tumor
0.3
952
Normal
0.3
546
Normal
0.3
976
Normal
0.3
818
Normal
0.3
685
Tumor
0.3
628
Normal
0.3
648
Normal
0.3
435
Tumor
0.3
1028
Normal
0.3
356
Normal
0.3
298
Normal
0.3
944
Normal
0.3
1042
Normal
0.3
142
Normal
0.3
481
Tumor
0.3
518
Normal
0.3
221
Tumor
0.3
1026
Normal
0.3
494
Normal
0.3
232
Normal
0.3
362
Normal
0.3
451
Tumor
0.3
868
Normal
0.3
212
Normal
0.3
523
Tumor
0.2
914
Normal
0.2
426
Normal
0.2
816
Normal
0.2
1027
Tumor
0.2
538
Normal
0.2
344
Normal
0.2
727
Tumor
0.2
716
Normal
0.2
332
Normal
0.2
958
Normal
0.2
446
Normal
0.2
436
Normal
0.2
1016
Normal
0.2
393
Tumor
0.2
918
Normal
0.2
516
Normal
0.2
526
Normal
0.2
487
Tumor
0.2
572
Normal
0.2
785
Tumor
0.2
923
Tumor
0.2
916
Normal
0.2
414
Normal
0.2
977
Tumor
0.2
1015
Tumor
0.2
478
Normal
0.2
744
Normal
0.2
262
Normal
0.1
386
Normal
0.1
664
Normal
0.1
114
Normal
0.1
488
Normal
0.1
1046
Normal
0.1
884
Normal
0.1
1014
Normal
0.1
358
Normal
0.1
123
Tumor
0.1
963
Tumor
0.1
723
Tumor
0.1
314
Normal
0.1
571
Tumor
0.1
284
Normal
0.1
686
Normal
0.1
272
Normal
0.1
364
Normal
0.1
641
Tumor
0.1
416
Normal
0.1
924
Normal
0.1
984
Normal
0.1
432
Normal
0.1
558
Normal
0.1
955
Tumor
0.1
967
Tumor
0.1
415
Tumor
0.1
982
Normal
0.1
1044
Normal
0.1
341
Tumor
0.1
136
Normal
0.1
132
Normal
0.1
524
Normal
0.1
468
Normal
0.1
368
Normal
0.1
354
Normal
0.1
492
Normal
0.1
557
Tumor
0.1
258
Normal
0.1
938
Normal
0.1
533
Tumor
0.1
857
Tumor
0.1
218
Normal
0.0
434
Normal
0.0
456
Normal
0.0
137
Tumor
0.0
563
Tumor
0.0
617
Tumor
0.0
874
Normal
0.0
228
Normal
0.0
497
Tumor
0.0
461
Tumor
0.0
954
Normal
0.0
662
Normal
0.0
968
Normal
0.0
966
Normal
0.0
618
Normal
0.0
1031
Tumor
0.0
444
Normal
0.0
145
Tumor
0.0
471
Tumor
0.0
424
Normal
0.0
925
Tumor
0.0
978
Normal
0.0
852
Normal
0.0
922
Normal
0.0
392
Normal
0.0
464
Normal
0.0
778
Normal
0.0
111
Normal
0.0
352
Normal
0.0
147
Tumor
0.0
443
Tumor
0.0
278
Normal
0.0
956
Normal
0.0
227
Tumor
0.0
937
Tumor
-0.1
327
Tumor
-0.1
728
Normal
-0.1
568
Normal
-0.1
537
Tumor
-0.1
1021
Tumor
-0.1
642
Normal
-0.1
696
Normal
-0.1
413
Tumor
-0.1
312
Normal
-0.1
926
Normal
-0.1
951
Tumor
-0.1
913
Tumor
-0.1
214
Normal
-0.1
357
Tumor
-0.1
138
Normal
-0.1
823
Tumor
-0.1
286
Normal
-0.1
146
Normal
-0.1
672
Normal
-0.1
223
Tumor
-0.1
113
Tumor
-0.1
366
Normal
-0.1
191
Tumor
-0.1
714
Normal
-0.1
271
Tumor
-0.1
433
Tumor
-0.1
431
Tumor
-0.1
267
Tumor
-0.1
574
Normal
-0.1
188
Normal
-0.1
737
Tumor
-0.2
355
Tumor
-0.2
528
Normal
-0.2
697
Tumor
-0.2
353
Tumor
-0.2
721
Tumor
-0.2
814
Normal
-0.2
777
Tumor
-0.2
195
Tumor
-0.2
975
Tumor
-0.2
877
Tumor
-0.2
141
Tumor
-0.2
635
Tumor
-0.2
498
Normal
-0.2
647
Tumor
-0.2
745
Tumor
-0.2
127
Tumor
-0.2
943
Tumor
-0.2
883
Tumor
-0.3
384
Normal
-0.3
953
Tumor
-0.3
224
Normal
-0.3
615
Tumor
-0.3
873
Tumor
-0.3
297
Tumor
-0.3
863
Tumor
-0.3
447
Tumor
-0.3
957
Tumor
-0.3
455
Tumor
-0.3
491
Tumor
-0.4
387
Tumor
-0.4
666
Normal
-0.4
817
Tumor
-0.4
268
Normal
-0.4
493
Tumor
-0.4
257
Tumor
-0.4
665
Tumor
-0.4
851
Tumor
-0.5
217
Tumor
-0.5
124
Normal
-0.5
135
Tumor
-0.5
112
Tumor
-0.5
743
Tumor
-0.5
126
Normal
-0.5
536
Normal
-0.5
192
Normal
-0.5
187
Tumor
-0.5
421
Tumor
-0.6
185
Tumor
-0.6
383
Tumor
-0.6
463
Tumor
-0.6
525
Tumor
-0.6
427
Tumor
-0.6
131
Tumor
-0.6
1045
Tumor
-0.6
313
Tumor
-0.6
527
Tumor
-0.7
813
Tumor
-0.7
395
Tumor
-0.7
965
Tumor
-0.7
671
Tumor
-0.8
724
Normal
-0.8
277
Tumor
-0.8
917
Tumor
-0.8
567
Tumor
-0.8
467
Tumor
-0.8
535
Tumor
-0.8
425
Tumor
-0.9
983
Tumor
-0.9
351
Tumor
-0.9
445
Tumor
-0.9
213
Tumor
-0.9
367
Tumor
-0.9
311
Tumor
-1.0
343
Tumor
-1.0
545
Tumor
-1.0
391
Tumor
-1.0
815
Tumor
-1.1
331
Tumor
-1.1
573
Tumor
-1.2
283
Tumor
-1.2
385
Tumor
-1.2
285
Tumor
-1.3
375
Tumor
-1.4
211
Tumor
-1.5
661
Tumor
-1.6
125
Tumor
-1.6
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
