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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PAXX is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
26.3
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
106.6
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
84.2
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
83.2
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
79.3
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
78.2
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
76.9
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
72.7
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
71.3
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
68.1
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
67.0
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
66.9
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
64.4
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
64.1
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
63.3
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
62.6
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
58.9
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
55.8
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
54.5
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
54.0
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
52.1
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
51.6
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
48.6
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
48.2
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
48.0
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
47.9
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
47.5
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
47.3
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
46.9
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
46.8
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
45.8
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
45.8
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
45.5
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
45.5
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
45.4
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
45.4
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
45.2
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
45.1
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
44.5
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
42.9
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
42.2
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
42.1
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
42.0
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
41.7
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
41.5
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
40.0
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
39.9
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
39.5
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
39.0
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
38.7
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
38.6
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
38.6
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
38.3
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
38.0
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
37.2
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
37.2
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
37.1
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
37.0
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
36.7
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
36.5
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
36.4
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
36.3
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
36.1
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
35.8
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
35.7
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
35.6
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
35.5
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
35.3
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
34.9
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
34.8
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
34.7
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
34.5
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
34.5
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
34.4
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
34.3
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
34.2
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
34.1
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
33.9
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
33.7
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
33.5
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
33.5
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
33.4
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
33.2
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
33.2
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
33.2
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
33.0
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
32.8
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
32.8
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
32.5
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
32.3
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
32.3
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
32.3
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
32.2
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
32.1
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
32.0
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
31.9
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
31.8
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
31.8
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
31.8
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
31.7
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
31.5
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
31.3
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
31.3
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
31.3
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
31.3
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
31.2
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
31.2
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
31.0
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
30.7
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
30.6
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
30.4
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
30.3
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
30.3
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
29.9
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
29.8
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
29.7
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
29.3
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
29.1
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
29.1
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
29.1
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
29.1
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
29.0
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
29.0
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
28.9
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
28.7
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
28.7
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
28.3
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
28.1
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
28.0
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
27.7
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
27.6
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
27.6
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
27.5
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
27.4
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
27.4
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
27.3
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
27.3
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
26.8
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
26.8
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
26.7
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
26.7
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
26.6
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
26.5
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
26.4
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
26.3
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
26.2
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
26.2
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
26.0
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
26.0
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
25.9
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
25.9
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
25.8
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
25.8
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
25.8
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
25.8
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
25.8
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
25.8
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
25.7
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
25.7
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
25.6
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
25.3
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
25.2
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
25.1
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
25.1
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
25.1
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
25.0
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
24.9
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
24.8
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
24.8
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
24.4
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
24.4
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
24.4
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
24.0
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
23.9
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
23.7
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
23.7
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
23.7
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
23.6
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
23.6
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
23.5
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
23.4
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
23.3
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
23.3
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
23.1
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
23.1
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
23.1
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
23.0
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
23.0
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
23.0
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
23.0
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
23.0
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
23.0
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
22.9
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
22.7
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
22.7
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
22.6
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
22.5
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
22.5
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
22.3
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
22.3
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
21.9
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
21.9
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
21.7
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
21.6
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
21.6
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
21.5
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
21.3
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
21.3
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
21.0
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
21.0
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
20.7
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
20.7
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
20.6
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
20.6
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
20.3
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
20.3
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
20.2
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
20.2
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
20.2
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
20.1
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
20.0
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
20.0
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
19.9
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
19.9
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
19.9
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
19.8
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
19.8
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
19.7
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
19.7
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
19.6
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
19.4
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
19.4
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
19.3
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
19.2
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
19.0
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
18.8
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
18.8
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
18.8
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
18.7
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
18.7
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
18.7
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
18.7
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
18.6
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
18.4
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
18.3
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
18.3
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
18.3
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
18.2
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
18.1
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
18.0
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
17.9
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
17.9
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
17.9
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
17.8
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
17.8
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
17.7
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
17.6
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
17.6
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
17.6
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
17.6
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
17.5
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
17.4
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
17.2
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
17.0
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
16.9
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
16.8
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
16.8
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
16.7
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
16.6
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
16.6
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
16.6
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
16.5
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
16.4
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
16.3
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
16.3
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
16.2
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
16.2
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
16.2
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
16.1
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
16.1
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
16.1
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
16.1
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
16.0
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
15.9
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
15.9
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
15.9
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
15.9
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
15.8
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
15.7
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
15.6
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
15.6
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
15.6
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
15.5
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
15.4
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
15.3
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
15.1
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
15.1
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
15.1
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
15.1
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
14.8
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
14.8
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
14.6
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
14.5
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
14.4
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
14.4
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
14.1
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
14.0
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
13.9
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
13.9
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
13.8
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
13.7
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
13.7
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
13.6
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
13.6
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
13.3
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
13.3
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
13.2
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
13.0
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
12.8
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
12.6
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
12.6
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
12.6
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
12.6
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
12.6
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
12.5
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
12.3
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
12.0
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
12.0
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
11.7
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
11.5
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
11.3
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
11.2
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
11.0
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
10.9
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
10.7
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
10.7
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
10.5
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
10.4
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
10.4
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
10.3
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
10.1
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
10.0
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
9.8
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
9.7
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
9.7
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
9.6
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
9.6
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
8.7
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
8.4
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
8.3
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
8.3
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
8.2
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
7.8
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
7.5
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
7.3
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
7.1
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
6.7
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
6.6
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
6.1
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
6.0
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
5.1
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
4.8
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
Survival analysis data not available.
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
1021
Tumor
1.1
523
Tumor
0.9
937
Tumor
0.8
411
Tumor
0.7
393
Tumor
0.7
435
Tumor
0.7
423
Tumor
0.6
361
Tumor
0.6
881
Tumor
0.6
557
Tumor
0.6
427
Tumor
0.6
223
Tumor
0.5
461
Tumor
0.5
161
Tumor
0.4
231
Tumor
0.4
686
Normal
0.4
533
Tumor
0.4
327
Tumor
0.4
483
Tumor
0.3
278
Normal
0.3
413
Tumor
0.3
195
Tumor
0.3
497
Tumor
0.3
394
Normal
0.3
493
Tumor
0.3
823
Tumor
0.3
341
Tumor
0.3
135
Tumor
0.3
298
Normal
0.3
277
Tumor
0.3
392
Normal
0.3
635
Tumor
0.3
695
Tumor
0.2
297
Tumor
0.2
778
Normal
0.2
141
Tumor
0.2
396
Normal
0.2
445
Tumor
0.2
518
Normal
0.2
388
Normal
0.2
312
Normal
0.2
516
Normal
0.2
571
Tumor
0.2
755
Tumor
0.2
982
Normal
0.2
721
Tumor
0.2
355
Tumor
0.2
487
Tumor
0.2
425
Tumor
0.2
957
Tumor
0.2
515
Tumor
0.2
313
Tumor
0.2
436
Normal
0.2
984
Normal
0.2
911
Tumor
0.2
362
Normal
0.2
344
Normal
0.2
923
Tumor
0.2
138
Normal
0.2
953
Tumor
0.2
342
Normal
0.2
714
Normal
0.1
492
Normal
0.1
722
Normal
0.1
268
Normal
0.1
716
Normal
0.1
913
Tumor
0.1
857
Tumor
0.1
357
Tumor
0.1
474
Normal
0.1
664
Normal
0.1
966
Normal
0.1
465
Tumor
0.1
272
Normal
0.1
925
Tumor
0.1
538
Normal
0.1
386
Normal
0.1
573
Tumor
0.1
332
Normal
0.1
1016
Normal
0.1
746
Normal
0.1
484
Normal
0.1
648
Normal
0.1
955
Tumor
0.1
132
Normal
0.1
314
Normal
0.1
952
Normal
0.1
663
Tumor
0.1
432
Normal
0.1
1028
Normal
0.1
352
Normal
0.1
498
Normal
0.1
267
Tumor
0.1
136
Normal
0.1
147
Tumor
0.1
553
Tumor
0.1
148
Normal
0.1
567
Tumor
0.1
146
Normal
0.1
187
Tumor
0.1
968
Normal
0.1
963
Tumor
0.1
426
Normal
0.1
1031
Tumor
0.1
358
Normal
0.1
467
Tumor
0.1
546
Normal
0.1
978
Normal
0.1
866
Normal
0.0
777
Tumor
0.0
1026
Normal
0.0
434
Normal
0.0
662
Normal
0.0
113
Tumor
0.0
1025
Tumor
0.0
262
Normal
0.0
916
Normal
0.0
376
Normal
0.0
384
Normal
0.0
188
Normal
0.0
924
Normal
0.0
478
Normal
0.0
878
Normal
0.0
715
Tumor
0.0
366
Normal
0.0
114
Normal
0.0
1032
Normal
0.0
824
Normal
0.0
926
Normal
0.0
1014
Normal
0.0
672
Normal
0.0
965
Tumor
0.0
424
Normal
0.0
696
Normal
0.0
1022
Normal
0.0
756
Normal
0.0
861
Tumor
0.0
212
Normal
0.0
471
Tumor
0.0
456
Normal
0.0
162
Normal
0.0
868
Normal
0.0
395
Tumor
0.0
142
Normal
0.0
232
Normal
0.0
915
Tumor
0.0
422
Normal
0.0
914
Normal
0.0
698
Normal
0.0
744
Normal
0.0
473
Tumor
0.0
852
Normal
0.0
1042
Normal
0.0
858
Normal
0.0
416
Normal
0.0
554
Normal
0.0
124
Normal
0.0
356
Normal
0.0
975
Tumor
0.0
1041
Tumor
0.0
816
Normal
0.0
977
Tumor
0.0
786
Normal
0.0
365
Tumor
0.0
354
Normal
0.0
697
Tumor
0.0
428
Normal
0.0
851
Tumor
0.0
494
Normal
0.0
228
Normal
0.0
737
Tumor
0.0
286
Normal
0.0
258
Normal
0.0
185
Tumor
0.0
412
Normal
0.0
865
Tumor
0.0
462
Normal
0.0
488
Normal
0.0
472
Normal
0.0
884
Normal
0.0
213
Tumor
0.0
944
Normal
0.0
738
Normal
0.0
524
Normal
0.0
513
Tumor
0.0
526
Normal
0.0
745
Tumor
-0.1
172
Normal
-0.1
882
Normal
-0.1
917
Tumor
-0.1
284
Normal
-0.1
666
Normal
-0.1
452
Normal
-0.1
477
Tumor
-0.1
912
Normal
-0.1
128
Normal
-0.1
443
Tumor
-0.1
455
Tumor
-0.1
482
Normal
-0.1
343
Tumor
-0.1
353
Tumor
-0.1
647
Tumor
-0.1
218
Normal
-0.1
918
Normal
-0.1
468
Normal
-0.1
964
Normal
-0.1
545
Tumor
-0.1
814
Normal
-0.1
572
Normal
-0.1
446
Normal
-0.1
111
Normal
-0.1
328
Normal
-0.1
311
Tumor
-0.1
447
Tumor
-0.1
126
Normal
-0.1
196
Normal
-0.1
368
Normal
-0.1
938
Normal
-0.1
728
Normal
-0.1
444
Normal
-0.1
464
Normal
-0.1
976
Normal
-0.1
958
Normal
-0.1
514
Normal
-0.1
224
Normal
-0.1
415
Tumor
-0.1
618
Normal
-0.1
785
Tumor
-0.1
414
Normal
-0.1
227
Tumor
-0.1
528
Normal
-0.1
364
Normal
-0.1
131
Tumor
-0.1
431
Tumor
-0.1
536
Normal
-0.1
628
Normal
-0.1
742
Normal
-0.1
862
Normal
-0.1
525
Tumor
-0.2
186
Normal
-0.2
214
Normal
-0.2
956
Normal
-0.2
191
Tumor
-0.2
864
Normal
-0.2
874
Normal
-0.2
466
Normal
-0.2
127
Tumor
-0.2
813
Tumor
-0.2
563
Tumor
-0.2
818
Normal
-0.2
883
Tumor
-0.2
211
Tumor
-0.2
387
Tumor
-0.2
954
Normal
-0.2
922
Normal
-0.2
574
Normal
-0.2
1044
Normal
-0.2
568
Normal
-0.2
723
Tumor
-0.2
616
Normal
-0.2
558
Normal
-0.2
1046
Normal
-0.2
951
Tumor
-0.2
192
Normal
-0.2
943
Tumor
-0.2
636
Normal
-0.2
534
Normal
-0.2
222
Normal
-0.2
867
Tumor
-0.2
642
Normal
-0.3
367
Tumor
-0.3
171
Tumor
-0.3
685
Tumor
-0.3
873
Tumor
-0.3
617
Tumor
-0.3
375
Tumor
-0.3
564
Normal
-0.3
661
Tumor
-0.3
383
Tumor
-0.3
527
Tumor
-0.3
391
Tumor
-0.3
448
Normal
-0.3
981
Tumor
-0.3
724
Normal
-0.3
125
Tumor
-0.3
433
Tumor
-0.3
137
Tumor
-0.3
385
Tumor
-0.3
145
Tumor
-0.3
421
Tumor
-0.4
1013
Tumor
-0.4
967
Tumor
-0.4
481
Tumor
-0.4
1043
Tumor
-0.4
615
Tumor
-0.4
261
Tumor
-0.4
123
Tumor
-0.4
451
Tumor
-0.4
713
Tumor
-0.4
1045
Tumor
-0.4
257
Tumor
-0.4
641
Tumor
-0.4
271
Tumor
-0.4
815
Tumor
-0.5
817
Tumor
-0.5
983
Tumor
-0.5
627
Tumor
-0.5
491
Tumor
-0.5
463
Tumor
-0.5
283
Tumor
-0.5
535
Tumor
-0.5
665
Tumor
-0.5
517
Tumor
-0.5
921
Tumor
-0.5
217
Tumor
-0.5
363
Tumor
-0.6
1015
Tumor
-0.6
671
Tumor
-0.6
741
Tumor
-0.6
863
Tumor
-0.7
351
Tumor
-0.7
221
Tumor
-0.7
331
Tumor
-0.8
285
Tumor
-0.8
1027
Tumor
-1.0
112
Tumor
-1.0
727
Tumor
-1.0
877
Tumor
-1.1
537
Tumor
-1.2
743
Tumor
-1.7
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
